Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3386_(-)_3800272_3800976
DateFri Aug 9 18:20:05 BST 2019
Unique Job ID689b6065b7b22e7e
SequenceVFRTVGDQAS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:22.835 Y:29.520 Z:24.851
Model (left) based on template d1slma1
Top template information
Fold:PGBD-like
Superfamily:PGBD-like
Family:MMP N-terminal domain
Confidence and coverage
Confidence: 62.5% Coverage: 16%
37 residues ( 16% of your sequence) have been modelled with 62.5% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1slma1



62.5 19
Fold:PGBD-like
Superfamily:PGBD-like
Family:MMP N-terminal domain
2c1bg1A_



44.7 17
PDB header:transcription/dna
Chain: A: PDB Molecule:protein (transcription factor stat3b);
PDBTitle: transcription factor stat3b/dna complex
3c3hefB_



44.2 15
PDB header:viral protein
Chain: B: PDB Molecule:gene 1 protein;
PDBTitle: crystal structure of the bacteriophage sf6 terminase small subunit
4c5wtnB_



42.6 19
PDB header:replication
Chain: B: PDB Molecule:replication initiation and membrane attachment protein;
PDBTitle: crystal structure analysis of primosome protein dnab (resiues 1-300)2 from geobacillus stearothermophilus
5c1yvlB_



36.5 13
PDB header:signaling protein
Chain: B: PDB Molecule:signal transducer and activator of transcription
PDBTitle: structure of unphosphorylated stat1
6c6raoI_



35.3 13
PDB header:virus like particle
Chain: I: PDB Molecule:afp11;
PDBTitle: cryo-em structure of the anti-feeding prophage (afp) baseplate, 6-fold2 symmetrised
7d1bg1a2



27.8 18
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:p53-like transcription factors
Family:STAT DNA-binding domain
8d1eaka1



25.5 21
Fold:PGBD-like
Superfamily:PGBD-like
Family:MMP N-terminal domain
9c1bf5A_



24.7 18
PDB header:gene regulation/dna
Chain: A: PDB Molecule:signal transducer and activator of transcription 1-
PDBTitle: tyrosine phosphorylated stat-1/dna complex
10d1su3a1



24.4 22
Fold:PGBD-like
Superfamily:PGBD-like
Family:MMP N-terminal domain
11c6g4ww_



20.3 22
PDB header:ribosome
Chain: W: PDB Molecule:40s ribosomal protein s15a;
PDBTitle: cryo-em structure of a late human pre-40s ribosomal subunit - state a
12c3nzqB_



19.6 12
PDB header:lyase
Chain: B: PDB Molecule:biosynthetic arginine decarboxylase;
PDBTitle: crystal structure of biosynthetic arginine decarboxylase adc (spea)2 from escherichia coli, northeast structural genomics consortium3 target er600
13c1eakA_



16.6 18
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:72 kda type iv collagenase;
PDBTitle: catalytic domain of prommp-2 e404q mutant
14c3iwfA_



16.1 7
PDB header:transcription regulator
Chain: A: PDB Molecule:transcription regulator rpir family;
PDBTitle: the crystal structure of the n-terminal domain of a rpir2 transcriptional regulator from staphylococcus epidermidis to 1.4a
15c2p06A_



15.9 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein af_0060;
PDBTitle: crystal structure of a predicted coding region af_0060 from2 archaeoglobus fulgidus dsm 4304
16d2p06a1



15.9 18
Fold:all-alpha NTP pyrophosphatases
Superfamily:all-alpha NTP pyrophosphatases
Family:AF0060-like
17c3n2oA_



15.9 16
PDB header:lyase
Chain: A: PDB Molecule:biosynthetic arginine decarboxylase;
PDBTitle: x-ray crystal structure of arginine decarboxylase complexed with2 arginine from vibrio vulnificus
18c1slmA_



15.0 14
PDB header:hydrolase
Chain: A: PDB Molecule:stromelysin-1;
PDBTitle: crystal structure of fibroblast stromelysin-1: the c-truncated human2 proenzyme
19c4fmoB_



12.7 45
PDB header:hydrolase
Chain: B: PDB Molecule:dna mismatch repair protein pms1;
PDBTitle: structure of the c-terminal domain of the saccharomyces cerevisiae2 mutl alpha (mlh1/pms1) heterodimer bound to a fragment of exo1
20c3d3kD_



12.5 24
PDB header:protein binding
Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: crystal structure of human edc3p
21d1q44a_



not modelled 12.1 11
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:PAPS sulfotransferase
22d2v9va2



not modelled 11.9 23
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:C-terminal fragment of elongation factor SelB
23d6paxa1



not modelled 11.5 25
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
24d2d1ha1



not modelled 11.3 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:TrmB-like
25c4gl3A_



not modelled 10.6 24
PDB header:hydrolase
Chain: A: PDB Molecule:putative glucoamylase;
PDBTitle: crystal structure of a putative glucoamylase (bacuni_03963) from2 bacteroides uniformis atcc 8492 at 2.01 a resolution
26c6jnyA_



not modelled 10.5 0
PDB header:transcription
Chain: A: PDB Molecule:antiterminator q protein;
PDBTitle: crystal structure of bacteriophage 21 q protein
27d2i52a1



not modelled 10.2 7
Fold:MK0786-like
Superfamily:MK0786-like
Family:MK0786-like
28c2v7iA_



not modelled 10.2 20
PDB header:biosynthetic protein
Chain: A: PDB Molecule:prnb;
PDBTitle: prnb native
29c3ohwB_



not modelled 9.9 5
PDB header:protein binding
Chain: B: PDB Molecule:phycobilisome lcm core-membrane linker polypeptide;
PDBTitle: x-ray structure of phycobilisome lcm core-membrane linker polypeptide2 (fragment 721-860) from synechocystis sp. pcc 6803, northeast3 structural genomics consortium target sgr209e
30c3pruD_



not modelled 9.9 0
PDB header:photosynthesis
Chain: D: PDB Molecule:phycobilisome 32.1 kda linker polypeptide, phycocyanin-
PDBTitle: crystal structure of phycobilisome 32.1 kda linker polypeptide,2 phycocyanin-associated, rod 1 (fragment 14-158) from synechocystis3 sp. pcc 6803, northeast structural genomics consortium target sgr182a
31d1s4ka_



not modelled 9.9 26
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:YdiL-like
32c3gabC_



not modelled 9.6 64
PDB header:hydrolase
Chain: C: PDB Molecule:dna mismatch repair protein mutl;
PDBTitle: c-terminal domain of bacillus subtilis mutl crystal form i
33c2kq5A_



not modelled 9.3 11
PDB header:unknown function
Chain: A: PDB Molecule:avirulence protein;
PDBTitle: solution nmr structure of a section of the repeat domain of the type2 iii effector protein ptha
34d1my6a2



not modelled 9.3 8
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
35c2ogfD_



not modelled 9.2 17
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein mj0408;
PDBTitle: crystal structure of protein mj0408 from methanococcus jannaschii,2 pfam duf372
36d1qaza_



not modelled 9.0 21
Fold:alpha/alpha toroid
Superfamily:Chondroitin AC/alginate lyase
Family:Alginate lyase A1-III
37c3rbnB_



not modelled 8.8 21
PDB header:protein binding
Chain: B: PDB Molecule:dna mismatch repair protein mlh1;
PDBTitle: crystal structure of mutl protein homolog 1 isoform 1 [homo sapiens]
38c2l06A_



not modelled 8.7 12
PDB header:protein binding
Chain: A: PDB Molecule:phycobilisome lcm core-membrane linker polypeptide;
PDBTitle: solution nmr structure of the pbs linker polypeptide domain (fragment2 254-400) of phycobilisome linker protein apce from synechocystis sp.3 pcc 6803. northeast structural genomics consortium target sgr209c
39c4xviA_



not modelled 8.5 13
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase nu;
PDBTitle: binary complex of human polymerase nu and dna with the finger domain2 ajar
40c2ky4A_



not modelled 8.5 10
PDB header:photosynthesis
Chain: A: PDB Molecule:phycobilisome linker polypeptide;
PDBTitle: solution nmr structure of the pbs linker domain of phycobilisome2 linker polypeptide from anabaena sp. northeast structural genomics3 consortium target nsr123e
41c3dxeB_



not modelled 8.3 22
PDB header:protein binding
Chain: B: PDB Molecule:amyloid beta a4 protein;
PDBTitle: crystal structure of the intracellular domain of human app (t668a2 mutant) in complex with fe65-ptb2
42c3ncvB_



not modelled 7.6 27
PDB header:hydrolase
Chain: B: PDB Molecule:dna mismatch repair protein mutl;
PDBTitle: ngol
43c3d3jA_



not modelled 7.5 24
PDB header:protein binding
Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: crystal structure of human edc3p
44d1prtd_



not modelled 7.5 43
Fold:OB-fold
Superfamily:Bacterial enterotoxins
Family:Bacterial AB5 toxins, B-subunits
45c3b21A_



not modelled 7.3 27
PDB header:unknown function
Chain: A: PDB Molecule:orf169b;
PDBTitle: crystal structure of ospi from shigella flexineri
46c4z38B_



not modelled 7.1 10
PDB header:transferase
Chain: B: PDB Molecule:mlna;
PDBTitle: crystal structure of enoyl reductase domain of mlna from the2 macrolactin biosynthesis cluster from bacillus amyloliquefaciens
47c2qsrA_



not modelled 6.8 14
PDB header:transcription
Chain: A: PDB Molecule:transcription-repair coupling factor;
PDBTitle: crystal structure of c-terminal domain of transcription-repair2 coupling factor
48c5b42A_



not modelled 6.6 45
PDB header:dna binding protein
Chain: A: PDB Molecule:dna mismatch repair protein mutl;
PDBTitle: crystal structure of the c-terminal endonuclease domain of aquifex2 aeolicus mutl.
49c5hubA_



not modelled 6.6 11
PDB header:isomerase
Chain: A: PDB Molecule:chorismate mutase;
PDBTitle: high-resolution structure of chorismate mutase from corynebacterium2 glutamicum
50c2v9vA_



not modelled 6.5 28
PDB header:transcription
Chain: A: PDB Molecule:selenocysteine-specific elongation factor;
PDBTitle: crystal structure of moorella thermoacetica selb(377-511)
51d3e11a1



not modelled 6.4 12
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:TTHA0227-like
52c2kebA_



not modelled 6.2 19
PDB header:dna binding protein
Chain: A: PDB Molecule:dna polymerase subunit alpha b;
PDBTitle: nmr solution structure of the n-terminal domain of the dna polymerase2 alpha p68 subunit
53c4e2i3_



not modelled 6.2 19
PDB header:hydrolase/dna binding protein
Chain: 3: PDB Molecule:dna polymerase alpha subunit b;
PDBTitle: the complex structure of the sv40 helicase large t antigen and p682 subunit of dna polymerase alpha-primase
54c2zw3B_



not modelled 5.9 16
PDB header:cell adhesion
Chain: B: PDB Molecule:gap junction beta-2 protein;
PDBTitle: structure of the connexin-26 gap junction channel at 3.52 angstrom resolution
55d1puza_



not modelled 5.8 13
Fold:YgfY-like
Superfamily:YgfY-like
Family:YgfY-like
56c2ahqA_



not modelled 5.7 13
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase sigma factor rpon;
PDBTitle: solution structure of the c-terminal rpon domain of sigma-2 54 from aquifex aeolicus
57c2y1hA_



not modelled 5.6 12
PDB header:hydrolase
Chain: A: PDB Molecule:putative deoxyribonuclease tatdn3;
PDBTitle: crystal structure of the human tatd-domain protein 3 (tatdn3)
58c1xvlC_



not modelled 5.6 5
PDB header:metal transport
Chain: C: PDB Molecule:mn transporter;
PDBTitle: the three-dimensional structure of mntc from synechocystis2 6803
59c3cwgA_



not modelled 5.6 20
PDB header:transcription
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: unphosphorylated mouse stat3 core fragment
60d1unfx2



not modelled 5.5 16
Fold:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Superfamily:Fe,Mn superoxide dismutase (SOD), C-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), C-terminal domain
61c3o0rC_



not modelled 5.5 10
PDB header:immune system/oxidoreductase
Chain: C: PDB Molecule:nitric oxide reductase subunit c;
PDBTitle: crystal structure of nitric oxide reductase from pseudomonas2 aeruginosa in complex with antibody fragment
62c2o8xA_



not modelled 5.4 10
PDB header:transcription
Chain: A: PDB Molecule:probable rna polymerase sigma-c factor;
PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc
63d1bwvs_



not modelled 5.4 12
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
64d1l6ja1



not modelled 5.4 16
Fold:PGBD-like
Superfamily:PGBD-like
Family:MMP N-terminal domain
65c3nzpA_



not modelled 5.3 24
PDB header:lyase
Chain: A: PDB Molecule:arginine decarboxylase;
PDBTitle: crystal structure of the biosynthetic arginine decarboxylase spea from2 campylobacter jejuni, northeast structural genomics consortium target3 br53
66c5z06A_



not modelled 5.2 17
PDB header:hydrolase
Chain: A: PDB Molecule:bdi_3064 protein;
PDBTitle: crystal structure of beta-1,2-glucanase from parabacteroides2 distasonis
67d1q8ha_



not modelled 5.2 25
Fold:GLA-domain
Superfamily:GLA-domain
Family:GLA-domain
68c1q8hA_



not modelled 5.2 25
PDB header:metal binding protein
Chain: A: PDB Molecule:osteocalcin;
PDBTitle: crystal structure of porcine osteocalcin
69c4ct4C_



not modelled 5.1 8
PDB header:rna binding protein
Chain: C: PDB Molecule:ccr4-not transcription complex subunit 1;
PDBTitle: cnot1 mif4g domain - ddx6 complex
70d1c06a_



not modelled 5.1 12
Fold:Alpha-L RNA-binding motif
Superfamily:Alpha-L RNA-binding motif
Family:Ribosomal protein S4
71c5ujcA_



not modelled 5.0 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:mmachc-like protein;
PDBTitle: crystal structure of a c.elegans b12-trafficking protein cblc, a human2 mmachc homologue

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