Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3393_(iunH)_3808641_3809567
DateFri Aug 9 18:20:06 BST 2019
Unique Job ID8bc378d38730d2d7
SequenceVSVVFADVDT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:55.300 Y:46.635 Z:49.875
Model (left) based on template d2masa_
Top template information
Fold:Nucleoside hydrolase
Superfamily:Nucleoside hydrolase
Family:Nucleoside hydrolase
Confidence and coverage
Confidence:100.0% Coverage: 97%
299 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2masa_



100.0 28
Fold:Nucleoside hydrolase
Superfamily:Nucleoside hydrolase
Family:Nucleoside hydrolase
2c6ba1C_



100.0 33
PDB header:hydrolase
Chain: C: PDB Molecule:inosine-uridine preferring nucleoside hydrolase;
PDBTitle: purine-preferring ribonucleoside hydrolase from gardnerella vaginalis
3c3b9xA_



100.0 29
PDB header:hydrolase
Chain: A: PDB Molecule:pyrimidine-specific ribonucleoside hydrolase rihb;
PDBTitle: crystal structure of the e. coli pyrimidine nucleoside hydrolase yeik2 in complex with inosine
4c4kpnE_



100.0 33
PDB header:hydrolase
Chain: E: PDB Molecule:nucleoside n-ribohydrolase 1;
PDBTitle: plant nucleoside hydrolase - ppnrh1 enzyme
5d1q8fa_



100.0 29
Fold:Nucleoside hydrolase
Superfamily:Nucleoside hydrolase
Family:Nucleoside hydrolase
6c3t8jA_



100.0 28
PDB header:hydrolase
Chain: A: PDB Molecule:purine nucleosidase, (iunh-1);
PDBTitle: structural analysis of thermostable s. solfataricus pyrimidine-2 specific nucleoside hydrolase
7d1ezra_



100.0 30
Fold:Nucleoside hydrolase
Superfamily:Nucleoside hydrolase
Family:Nucleoside hydrolase
8c4kpoB_



100.0 31
PDB header:hydrolase
Chain: B: PDB Molecule:nucleoside n-ribohydrolase 3;
PDBTitle: plant nucleoside hydrolase - zmnrh3 enzyme
9c3t8iC_



100.0 28
PDB header:hydrolase
Chain: C: PDB Molecule:purine nucleosidase, (iunh-2);
PDBTitle: structural analysis of thermostable s. solfataricus purine-specific2 nucleoside hydrolase
10c6ba0D_



100.0 32
PDB header:hydrolase
Chain: D: PDB Molecule:cytidine/uridine-specific hydrolase;
PDBTitle: pyrimidine-specific ribonucleoside hydrolase from gardnerella2 vaginalis
11c1yoeA_



100.0 33
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical protein ybek;
PDBTitle: crystal structure of a the e. coli pyrimidine nucleoside hydrolase2 ybek with bound ribose
12c3fz0C_



100.0 30
PDB header:hydrolase
Chain: C: PDB Molecule:nucleoside hydrolase, putative;
PDBTitle: inosine-guanosine nucleoside hydrolase (ig-nh)
13c5mj7B_



100.0 26
PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: structure of the c. elegans nucleoside hydrolase
14c4wr2A_



100.0 30
PDB header:hydrolase
Chain: A: PDB Molecule:pyrimidine-specific ribonucleoside hydrolase riha;
PDBTitle: crystal structure of a putative pyrimidine-specific ribonucleoside2 hydrolase (riha) protein from shewanella loihica pv-4 (shew_0697,3 target psi-029635) with divalent cation and peg 400 bound at the4 active site
15c2c40B_



100.0 23
PDB header:hydrolase
Chain: B: PDB Molecule:inosine-uridine preferring nucleoside hydrolase family
PDBTitle: crystal structure of inosine-uridine preferring nucleoside2 hydrolase from bacillus anthracis at 2.2a resolution
16c4i74A_



100.0 22
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:inosine-adenosine-guanosine-nucleoside hydrolase;
PDBTitle: crystal structure of the trypanosoma brucei inosine-adenosine-2 guanosine nucleoside hydrolase in complex with compound uamc-003123 and allosterically inhibited by a ni2+ ion
17d1kica_



100.0 22
Fold:Nucleoside hydrolase
Superfamily:Nucleoside hydrolase
Family:Nucleoside hydrolase
18c4kl0A_



100.0 17
PDB header:calcium binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the effector protein xoo4466
19c2yhgA_



99.5 21
PDB header:hydrolase
Chain: A: PDB Molecule:cellulose-binding protein;
PDBTitle: ab initio phasing of a nucleoside hydrolase-related hypothetical2 protein from saccharophagus degradans that is associated with3 carbohydrate metabolism
20c5d8mA_



82.3 18
PDB header:hydrolase
Chain: A: PDB Molecule:metagenomic carboxyl esterase mgs0156;
PDBTitle: crystal structure of the metagenomic carboxyl esterase mgs0156
21d1gpma1



not modelled 60.9 12
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
22d1ccwa_



not modelled 57.4 20
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
23c4ra6A_



not modelled 56.5 17
PDB header:hydrolase
Chain: A: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of linker less pyrococcus furiosus l-asparaginase
24c2zyiB_



not modelled 47.8 15
PDB header:hydrolase
Chain: B: PDB Molecule:lipase, putative;
PDBTitle: a. fulgidus lipase with fatty acid fragment and calcium
25d7reqa2



not modelled 47.2 22
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
26d2ocda1



not modelled 45.7 16
Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
27d1tcaa_



not modelled 45.0 20
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Fungal lipases
28c2p2dA_



not modelled 34.9 17
PDB header:transferase
Chain: A: PDB Molecule:l-asparaginase i;
PDBTitle: crystal structure and allosteric regulation of the cytoplasmic2 escherichia coli l-asparaginase i
29c2c5sA_



not modelled 34.0 9
PDB header:rna-binding protein
Chain: A: PDB Molecule:probable thiamine biosynthesis protein thii;
PDBTitle: crystal structure of bacillus anthracis thii, a trna-2 modifying enzyme containing the predicted rna-binding3 thump domain
30c3icvA_



not modelled 32.2 18
PDB header:hydrolase
Chain: A: PDB Molecule:lipase b;
PDBTitle: structural consequences of a circular permutation on lipase b from2 candida antartica
31c4ldaF_



not modelled 31.9 22
PDB header:transcription
Chain: F: PDB Molecule:tadz;
PDBTitle: crystal structure of a chey-like protein (tadz) from pseudomonas2 aeruginosa pao1 at 2.70 a resolution
32d1nnsa_



not modelled 31.4 16
Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
33c4q0mA_



not modelled 30.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of pyrococcus furiosus l-asparaginase
34d1o7ja_



not modelled 29.7 24
Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
35d4pgaa_



not modelled 28.1 22
Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
36c4r8kC_



not modelled 26.6 19
PDB header:hydrolase
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the guinea pig l-asparaginase 1 catalytic domain
37c1wnfA_



not modelled 25.8 16
PDB header:hydrolase
Chain: A: PDB Molecule:l-asparaginase;
PDBTitle: crystal structure of ph0066 from pyrococcus horikoshii
38d1o94c_



not modelled 24.5 15
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:ETFP subunits
39c1ni5A_



not modelled 24.2 21
PDB header:cell cycle
Chain: A: PDB Molecule:putative cell cycle protein mesj;
PDBTitle: structure of the mesj pp-atpase from escherichia coli
40c4kpuB_



not modelled 24.1 14
PDB header:electron transport
Chain: B: PDB Molecule:electron transfer flavoprotein alpha/beta-subunit;
PDBTitle: electron transferring flavoprotein of acidaminococcus fermentans:2 towards a mechanism of flavin-based electron bifurcation
41c5ow0B_



not modelled 23.8 21
PDB header:electron transport
Chain: B: PDB Molecule:electron transfer flavoprotein, beta subunit;
PDBTitle: crystal structure of an electron transfer flavoprotein from2 geobacillus metallireducens
42d1wsaa_



not modelled 21.4 19
Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
43c5ot0A_



not modelled 21.1 14
PDB header:hydrolase
Chain: A: PDB Molecule:l-asparaginase;
PDBTitle: the thermostable l-asparaginase from thermococcus kodakarensis
44c5ol2E_



not modelled 20.7 15
PDB header:flavoprotein
Chain: E: PDB Molecule:electron transfer flavoprotein small subunit;
PDBTitle: the electron transferring flavoprotein/butyryl-coa dehydrogenase2 complex from clostridium difficile
45c3vrhA_



not modelled 20.6 16
PDB header:rna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein ph0300;
PDBTitle: crystal structure of ph0300
46c1y80A_



not modelled 20.4 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:predicted cobalamin binding protein;
PDBTitle: structure of a corrinoid (factor iiim)-binding protein from moorella2 thermoacetica
47c3eulB_



not modelled 20.3 15
PDB header:transcription
Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional
PDBTitle: structure of the signal receiver domain of the putative response2 regulator narl from mycobacterium tuberculosis
48c3j26C_



not modelled 19.7 26
PDB header:virus
Chain: C: PDB Molecule:capsid protein v20;
PDBTitle: the 3.5 a resolution structure of the sputnik virophage by cryo-em
49c2dplA_



not modelled 19.7 15
PDB header:ligase
Chain: A: PDB Molecule:gmp synthase [glutamine-hydrolyzing] subunit b;
PDBTitle: crystal structure of the gmp synthase from pyrococcus horikoshii ot3
50d1agxa_



not modelled 19.2 13
Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
51d2b3ya2



not modelled 19.2 23
Fold:Aconitase iron-sulfur domain
Superfamily:Aconitase iron-sulfur domain
Family:Aconitase iron-sulfur domain
52c3qz6A_



not modelled 18.4 12
PDB header:lyase
Chain: A: PDB Molecule:hpch/hpai aldolase;
PDBTitle: the crystal structure of hpch/hpai aldolase from desulfitobacterium2 hafniense dcb-2
53d1ni5a1



not modelled 18.4 14
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:PP-loop ATPase
54d2c5sa1



not modelled 18.0 12
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:ThiI-like
55c4nzpA_



not modelled 17.5 13
PDB header:ligase
Chain: A: PDB Molecule:argininosuccinate synthase;
PDBTitle: the crystal structure of argininosuccinate synthase from campylobacter2 jejuni subsp. jejuni nctc 11168
56d3clsc1



not modelled 17.1 14
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:ETFP subunits
57c3ss1A_



not modelled 16.5 26
PDB header:transferase
Chain: A: PDB Molecule:toxin a;
PDBTitle: clostridium difficile toxin a (tcda) glucolsyltransferase domain
58c6bs3A_



not modelled 15.7 20
PDB header:unknown function
Chain: A: PDB Molecule:putative atpase rv3679;
PDBTitle: crystal structure of adp-bound bacterial get3-like a and b in2 mycobacterium tuberculosis
59c2ph1A_



not modelled 14.4 10
PDB header:ligand binding protein
Chain: A: PDB Molecule:nucleotide-binding protein;
PDBTitle: crystal structure of nucleotide-binding protein af2382 from2 archaeoglobus fulgidus, northeast structural genomics target gr165
60c4mozC_



not modelled 14.1 15
PDB header:lyase
Chain: C: PDB Molecule:fructose-bisphosphate aldolase;
PDBTitle: fructose-bisphosphate aldolase from slackia heliotrinireducens dsm2 20476
61c2d6fA_



not modelled 13.9 18
PDB header:ligase/rna
Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d;
PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln)
62d1vbka1



not modelled 13.8 13
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:ThiI-like
63d1ik6a2



not modelled 13.8 21
Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
64c5ghaC_



not modelled 13.5 15
PDB header:transferase/transport protein
Chain: C: PDB Molecule:sulfur transferase ttua;
PDBTitle: sulfur transferase ttua in complex with sulfur carrier ttub
65c4pfxA_



not modelled 13.0 18
PDB header:transferase
Chain: A: PDB Molecule:putative glycosyltransferase (galt1);
PDBTitle: the highly conserved domain of unknown function 1792 has a distinct2 glycosyltransferase fold
66c5v4aB_



not modelled 12.9 32
PDB header:transferase
Chain: B: PDB Molecule:glycosyltransferase (duf1792);
PDBTitle: a new glycosyltransferase (duf1792) from streptococcus sanguinis
67d1qhda1



not modelled 12.8 16
Fold:A virus capsid protein alpha-helical domain
Superfamily:A virus capsid protein alpha-helical domain
Family:vp6, the major capsid protein of group A rotavirus
68d1ve5a1



not modelled 12.8 21
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
69d2vl8a1



not modelled 12.2 19
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Glycosylating toxin catalytic domain-like
70c3hv2B_



not modelled 12.1 7
PDB header:signaling protein
Chain: B: PDB Molecule:response regulator/hd domain protein;
PDBTitle: crystal structure of signal receiver domain of hd domain-containing2 protein from pseudomonas fluorescens pf-5
71c4ysbB_



not modelled 11.7 21
PDB header:hydrolase
Chain: B: PDB Molecule:metallo-beta-lactamase family protein;
PDBTitle: crystal structure of ethe1 from myxococcus xanthus
72c4mf4F_



not modelled 11.7 22
PDB header:lyase
Chain: F: PDB Molecule:hpch/hpai aldolase/citrate lyase family protein;
PDBTitle: crystal structure of a hpch/hpal aldolase/citrate lyase family protein2 from burkholderia cenocepacia j2315
73c4x91C_



not modelled 11.7 18
PDB header:transferase
Chain: C: PDB Molecule:group xv phospholipase a2;
PDBTitle: crystal structure of lysosomal phospholipase a2 in complex with2 isopropyl dodec-11-enylfluorophosphonate (idfp)
74d1efvb_



not modelled 11.3 14
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:ETFP subunits
75c1xtyD_



not modelled 11.2 33
PDB header:hydrolase
Chain: D: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of sulfolobus solfataricus peptidyl-trna hydrolase
76c4eo9A_



not modelled 10.9 18
PDB header:isomerase
Chain: A: PDB Molecule:2,3-bisphosphoglycerate-dependent phosphoglycerate mutase;
PDBTitle: crystal structure of a phosphoglycerate mutase gpm1 from mycobacterium2 leprae
77d2vk9a1



not modelled 10.8 9
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Glycosylating toxin catalytic domain-like
78c2d3kA_



not modelled 10.3 33
PDB header:hydrolase
Chain: A: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: structural study on project id ph1539 from pyrococcus2 horikoshii ot3
79c2zv3E_



not modelled 10.2 33
PDB header:hydrolase
Chain: E: PDB Molecule:peptidyl-trna hydrolase;
PDBTitle: crystal structure of project mj0051 from methanocaldococcus2 jannaschii dsm 2661
80c3fkqA_



not modelled 10.0 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntrc-like two-domain protein;
PDBTitle: crystal structure of ntrc-like two-domain protein (rer070207001320)2 from eubacterium rectale at 2.10 a resolution
81c3cseA_



not modelled 9.8 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrofolate reductase;
PDBTitle: candida glabrata dihydrofolate reductase complexed with nadph and 2,4-2 diamino-5-(3-(2,5-dimethoxyphenyl)prop-1-ynyl)-6-ethylpyrimidine3 (ucp120b)
82c2wltA_



not modelled 9.8 16
PDB header:hydrolase
Chain: A: PDB Molecule:l-asparaginase;
PDBTitle: the crystal structure of helicobacter pylori l-asparaginase at 1.4 a2 resolution
83c4kr7A_



not modelled 9.7 23
PDB header:transferase/rna
Chain: A: PDB Molecule:probable trna sulfurtransferase;
PDBTitle: crystal structure of a 4-thiouridine synthetase - rna complex with2 bound atp
84d2a9pa1



not modelled 9.2 9
Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
85c3kjgB_



not modelled 9.1 17
PDB header:hydrolase, metal binding protein
Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase complex, accessory
PDBTitle: adp-bound state of cooc1
86d1lw7a1



not modelled 8.9 17
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Adenylyltransferase
87d3erja1



not modelled 8.9 33
Fold:Peptidyl-tRNA hydrolase II
Superfamily:Peptidyl-tRNA hydrolase II
Family:Peptidyl-tRNA hydrolase II
88c1zq1B_



not modelled 8.8 18
PDB header:lyase
Chain: B: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d;
PDBTitle: structure of gatde trna-dependent amidotransferase from2 pyrococcus abyssi
89c3fiuD_



not modelled 8.8 20
PDB header:ligase
Chain: D: PDB Molecule:nh(3)-dependent nad(+) synthetase;
PDBTitle: structure of nmn synthetase from francisella tularensis
90c3bl5E_



not modelled 8.8 13
PDB header:hydrolase
Chain: E: PDB Molecule:queuosine biosynthesis protein quec;
PDBTitle: crystal structure of quec from bacillus subtilis: an enzyme2 involved in preq1 biosynthesis
91c4x96B_



not modelled 8.7 12
PDB header:transferase
Chain: B: PDB Molecule:phosphatidylcholine-sterol acyltransferase;
PDBTitle: low resolution crystal structure of lecithin:cholesterol2 acyltransferase (lcat; residues 21-397)
92d2bvla1



not modelled 8.4 18
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Glycosylating toxin catalytic domain-like
93c2j7pA_



not modelled 8.3 16
PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
94d2d6fa2



not modelled 8.3 14
Fold:Glutaminase/Asparaginase
Superfamily:Glutaminase/Asparaginase
Family:Glutaminase/Asparaginase
95d1umdb2



not modelled 8.2 21
Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
96d1t1ra2



not modelled 8.1 3
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
97d2bfdb2



not modelled 8.0 11
Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
98d1q7sa_



not modelled 8.0 36
Fold:Peptidyl-tRNA hydrolase II
Superfamily:Peptidyl-tRNA hydrolase II
Family:Peptidyl-tRNA hydrolase II
99c1ys7B_



not modelled 8.0 11
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra complexed2 with mg2+

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