Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3394c_(-)_3809622_3811205
DateFri Aug 9 18:20:06 BST 2019
Unique Job ID16d840166d4c7004
SequenceVMASARVLAI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.959 Y:58.667 Z:72.444
Model (left) based on template c4ir1A_
Top template information
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase iv;
PDBTitle: polymerase-dna complex
Confidence and coverage
Confidence:100.0% Coverage: 64%
335 residues ( 64% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ir1A_



100.0 18
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase iv;
PDBTitle: polymerase-dna complex
2c1s97D_



100.0 14
PDB header:transferase/dna
Chain: D: PDB Molecule:dna polymerase iv;
PDBTitle: dpo4 with gt mismatch
3c1t94B_



100.0 15
PDB header:replication
Chain: B: PDB Molecule:polymerase (dna directed) kappa;
PDBTitle: crystal structure of the catalytic core of human dna polymerase kappa
4c3gqcB_



100.0 16
PDB header:transferase/dna
Chain: B: PDB Molecule:dna repair protein rev1;
PDBTitle: structure of human rev1-dna-dntp ternary complex
5c2oh2B_



100.0 15
PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase kappa;
PDBTitle: ternary complex of human dna polymerase
6c2fllA_



100.0 18
PDB header:replication/dna
Chain: A: PDB Molecule:dna polymerase iota;
PDBTitle: ternary complex of human dna polymerase iota with dna and dttp
7c1t3nB_



100.0 16
PDB header:replication/dna
Chain: B: PDB Molecule:polymerase (dna directed) iota;
PDBTitle: structure of the catalytic core of dna polymerase iota in complex with2 dna and dttp
8c3mr2A_



100.0 19
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase eta;
PDBTitle: human dna polymerase eta in complex with normal dna and incoming2 nucleotide (nrm)
9c1k1qA_



100.0 14
PDB header:transcription
Chain: A: PDB Molecule:dbh protein;
PDBTitle: crystal structure of a dinb family error prone dna2 polymerase from sulfolobus solfataricus
10c1jihA_



100.0 16
PDB header:translation
Chain: A: PDB Molecule:dna polymerase eta;
PDBTitle: yeast dna polymerase eta
11c2r8kB_



100.0 16
PDB header:replication, transferase/dna
Chain: B: PDB Molecule:dna polymerase eta;
PDBTitle: structure of the eukaryotic dna polymerase eta in complex with 1,2-2 d(gpg)-cisplatin containing dna
12c2aq4A_



100.0 15
PDB header:transferase
Chain: A: PDB Molecule:dna repair protein rev1;
PDBTitle: ternary complex of the catalytic core of rev1 with dna and dctp.
13d1jx4a2



100.0 16
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Lesion bypass DNA polymerase (Y-family), catalytic domain
14d1zeta2



100.0 17
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Lesion bypass DNA polymerase (Y-family), catalytic domain
15d1k1sa2



100.0 14
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Lesion bypass DNA polymerase (Y-family), catalytic domain
16c4dezA_



100.0 22
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase iv 1;
PDBTitle: structure of msdpo4
17d1t94a2



100.0 17
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Lesion bypass DNA polymerase (Y-family), catalytic domain
18d1jiha2



100.0 23
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Lesion bypass DNA polymerase (Y-family), catalytic domain
19d1im4a_



100.0 16
Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:Lesion bypass DNA polymerase (Y-family), catalytic domain
20d1unnc_



99.2 17
Fold:Lesion bypass DNA polymerase (Y-family), little finger domain
Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain
Family:Lesion bypass DNA polymerase (Y-family), little finger domain
21d1t94a1



not modelled 98.6 15
Fold:Lesion bypass DNA polymerase (Y-family), little finger domain
Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain
Family:Lesion bypass DNA polymerase (Y-family), little finger domain
22d1zeta1



not modelled 98.1 13
Fold:Lesion bypass DNA polymerase (Y-family), little finger domain
Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain
Family:Lesion bypass DNA polymerase (Y-family), little finger domain
23d1jiha1



not modelled 97.1 11
Fold:Lesion bypass DNA polymerase (Y-family), little finger domain
Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain
Family:Lesion bypass DNA polymerase (Y-family), little finger domain
24d1lb2b_



not modelled 94.4 12
Fold:SAM domain-like
Superfamily:C-terminal domain of RNA polymerase alpha subunit
Family:C-terminal domain of RNA polymerase alpha subunit
25d1z3eb1



not modelled 93.5 19
Fold:SAM domain-like
Superfamily:C-terminal domain of RNA polymerase alpha subunit
Family:C-terminal domain of RNA polymerase alpha subunit
26d1doqa_



not modelled 93.0 20
Fold:SAM domain-like
Superfamily:C-terminal domain of RNA polymerase alpha subunit
Family:C-terminal domain of RNA polymerase alpha subunit
27d1cooa_



not modelled 92.1 15
Fold:SAM domain-like
Superfamily:C-terminal domain of RNA polymerase alpha subunit
Family:C-terminal domain of RNA polymerase alpha subunit
28d1qw2a_



not modelled 90.0 24
Fold:Hypothetical protein Ta1206
Superfamily:Hypothetical protein Ta1206
Family:Hypothetical protein Ta1206
29c2maxA_



not modelled 89.8 17
PDB header:transferase
Chain: A: PDB Molecule:dna-directed rna polymerase subunit alpha;
PDBTitle: nmr structure of the rna polymerase alpha subunit c-terminal domain2 from helicobacter pylori
30d1szpa1



not modelled 89.5 22
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
31c5tw1T_



not modelled 88.6 21
PDB header:transcription activator/transferase/dna
Chain: T: PDB Molecule:dna-directed rna polymerase subunit alpha;
PDBTitle: crystal structure of a mycobacterium smegmatis transcription2 initiation complex with rbpa
32c2kz3A_



not modelled 87.1 20
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein rad51l3;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments for human rad51d2 from 1 to 83
33d1pzna1



not modelled 86.8 17
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
34d1gm5a2



not modelled 83.3 18
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:RecG "wedge" domain
35d1szpb1



not modelled 81.5 21
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
36d2i1qa1



not modelled 80.6 13
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
37d1jx4a1



not modelled 79.1 14
Fold:Lesion bypass DNA polymerase (Y-family), little finger domain
Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain
Family:Lesion bypass DNA polymerase (Y-family), little finger domain
38c5i2dA_



not modelled 76.2 20
PDB header:transcription/dna/rna
Chain: A: PDB Molecule:dna-directed rna polymerase subunit alpha;
PDBTitle: crystal structure of t. thermophilus tthb099 class ii transcription2 activation complex: tap-rpo
39d1b22a_



not modelled 74.3 15
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
40c1b22A_



not modelled 74.3 15
PDB header:dna binding protein
Chain: A: PDB Molecule:dna repair protein rad51;
PDBTitle: rad51 (n-terminal domain)
41c1t4gA_



not modelled 72.0 11
PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rada;
PDBTitle: atpase in complex with amp-pnp
42c3bqsB_



not modelled 68.6 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein from2 listeria monocytogenes, trigonal form
43c1nomA_



not modelled 67.0 7
PDB header:nucleotidyltransferase
Chain: A: PDB Molecule:dna polymerase beta;
PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7), 31-kd domain; soaked in the2 presence of mncl2 (5 millimolar)
44c8iczA_



not modelled 62.7 8
PDB header:transferase/dna
Chain: A: PDB Molecule:protein (dna polymerase beta (e.c.2.7.7.7));
PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar)
45c1gm5A_



not modelled 62.5 18
PDB header:helicase
Chain: A: PDB Molecule:recg;
PDBTitle: structure of recg bound to three-way dna junction
46c2bcuA_



not modelled 62.3 8
PDB header:transferase, lyase/dna
Chain: A: PDB Molecule:dna polymerase lambda;
PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch
47c1pznA_



not modelled 62.1 16
PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rad51;
PDBTitle: rad51 (rada)
48c3iydA_



not modelled 60.7 15
PDB header:transcription/dna
Chain: A: PDB Molecule:dna-directed rna polymerase subunit alpha;
PDBTitle: three-dimensional em structure of an intact activator-dependent2 transcription initiation complex
49d1jmsa3



not modelled 60.0 19
Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
50d2bcqa2



not modelled 58.1 8
Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
51c1szpC_



not modelled 57.9 21
PDB header:dna binding protein
Chain: C: PDB Molecule:dna repair protein rad51;
PDBTitle: a crystal structure of the rad51 filament
52d2vana1



not modelled 57.4 15
Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
53d2fmpa2



not modelled 56.5 12
Fold:SAM domain-like
Superfamily:PsbU/PolX domain-like
Family:DNA polymerase beta-like, second domain
54c1wcnA_



not modelled 56.0 26
PDB header:rna-binding protein
Chain: A: PDB Molecule:transcription elongation protein nusa;
PDBTitle: nmr structure of the carboxyterminal domains of escherichia2 coli nusa
55c1kdhA_



not modelled 55.1 12
PDB header:transferase/dna
Chain: A: PDB Molecule:terminal deoxynucleotidyltransferase short
PDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna
56c2ihmA_



not modelled 49.2 12
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase mu;
PDBTitle: polymerase mu in ternary complex with gapped 11mer dna duplex and2 bound incoming nucleotide
57d1k1sa1



not modelled 45.1 14
Fold:Lesion bypass DNA polymerase (Y-family), little finger domain
Superfamily:Lesion bypass DNA polymerase (Y-family), little finger domain
Family:Lesion bypass DNA polymerase (Y-family), little finger domain
58c1wwuA_



not modelled 42.5 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein flj21935;
PDBTitle: solution structure of the sam_pnt domain of human protein2 flj21935
59d2p6ra2



not modelled 42.0 21
Fold:Sec63 N-terminal domain-like
Superfamily:Sec63 N-terminal domain-like
Family:Achaeal helicase C-terminal domain
60c5jzcG_



not modelled 41.7 13
PDB header:dna binding protein
Chain: G: PDB Molecule:dna repair protein rad51 homolog 1;
PDBTitle: helical filament
61c2dflA_



not modelled 41.6 16
PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rada;
PDBTitle: crystal structure of left-handed rada filament
62c2iruA_



not modelled 38.1 13
PDB header:transferase
Chain: A: PDB Molecule:putative dna ligase-like protein rv0938/mt0965;
PDBTitle: crystal structure of the polymerase domain from mycobacterium2 tuberculosis ligase d
63c2zj8A_



not modelled 37.8 16
PDB header:hydrolase
Chain: A: PDB Molecule:putative ski2-type helicase;
PDBTitle: archaeal dna helicase hjm apo state in form 2
64c4p4oA_



not modelled 37.1 19
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase beta;
PDBTitle: crystal structure of leishmania infantum polymerase beta: ternary gap2 complex
65c5dmuA_



not modelled 36.5 20
PDB header:transferase
Chain: A: PDB Molecule:nhej polymerase;
PDBTitle: structure of the nhej polymerase from methanocella paludicola
66c2w9mB_



not modelled 35.6 15
PDB header:dna replication
Chain: B: PDB Molecule:polymerase x;
PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans
67d2a1ja1



not modelled 31.0 22
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
68d2q0zx1



not modelled 29.6 3
Fold:Sec63 N-terminal domain-like
Superfamily:Sec63 N-terminal domain-like
Family:Sec63 N-terminal domain
69c5ezbB_



not modelled 26.0 11
PDB header:transport protein
Chain: B: PDB Molecule:chicken prestin stas domain,chicken prestin stas domain;
PDBTitle: chicken prestin stas domain
70c2faoB_



not modelled 22.3 16
PDB header:hydrolase/transferase
Chain: B: PDB Molecule:probable atp-dependent dna ligase;
PDBTitle: crystal structure of pseudomonas aeruginosa ligd polymerase2 domain
71c3auoB_



not modelled 20.3 19
PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase beta family (x family);
PDBTitle: dna polymerase x from thermus thermophilus hb8 ternary complex with 1-2 nt gapped dna and ddgtp
72c3ldaA_



not modelled 19.5 21
PDB header:dna binding protein
Chain: A: PDB Molecule:dna repair protein rad51;
PDBTitle: yeast rad51 h352y filament interface mutant
73c5agaA_



not modelled 18.1 13
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase theta;
PDBTitle: crystal structure of the helicase domain of human dna2 polymerase theta in complex with amppnp
74c3idwA_



not modelled 17.4 23
PDB header:endocytosis
Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1;
PDBTitle: crystal structure of sla1 homology domain 2
75c1hl8B_



not modelled 17.0 19
PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-l-fucosidase;
PDBTitle: crystal structure of thermotoga maritima alpha-fucosidase
76c2e8mA_



not modelled 15.7 9
PDB header:signaling protein
Chain: A: PDB Molecule:epidermal growth factor receptor kinase
PDBTitle: solution structure of the c-terminal sam-domain of2 epidermal growth receptor pathway substrate 8
77c2l05A_



not modelled 14.6 21
PDB header:transferase
Chain: A: PDB Molecule:serine/threonine-protein kinase b-raf;
PDBTitle: solution nmr structure of the ras-binding domain of serine/threonine-2 protein kinase b-raf from homo sapiens, northeast structural genomics3 consortium target hr4694f
78c3im2A_



not modelled 14.5 9
PDB header:hydrolase
Chain: A: PDB Molecule:pre-mrna-splicing helicase brr2;
PDBTitle: structure of the c-terminal sec63 unit of yeast brr2, p41212 form
79d1dgsa1



not modelled 14.0 19
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:NAD+-dependent DNA ligase, domain 3
80c6ogdD_



not modelled 13.9 20
PDB header:toxin
Chain: D: PDB Molecule:toxin subunit yena1;
PDBTitle: cryo-em structure of yentca in its prepore state
81d2fomb1



not modelled 13.0 18
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
82c1rrbA_



not modelled 12.9 21
PDB header:transferase
Chain: A: PDB Molecule:raf proto-oncogene serine/threonine-protein
PDBTitle: the ras-binding domain of raf-1 from rat, nmr, 1 structure
83d1c1yb_



not modelled 12.8 21
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
84c4h2dB_



not modelled 12.8 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-dependent diflavin oxidoreductase 1;
PDBTitle: crystal structure of ndor1
85c4wwrE_



not modelled 12.5 54
PDB header:transport protein
Chain: E: PDB Molecule:large proline-rich protein bag6;
PDBTitle: crystal structure of bag6-ubl4a dimerization domain
86c5yxiA_



not modelled 12.4 43
PDB header:de novo protein
Chain: A: PDB Molecule:drafx6;
PDBTitle: designed protein drafx6
87d2fp7b1



not modelled 12.3 17
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
88d1befa_



not modelled 10.7 18
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
89c1loiA_



not modelled 10.5 42
PDB header:hydrolase
Chain: A: PDB Molecule:cyclic 3',5'-amp specific phosphodiesterase rd1;
PDBTitle: n-terminal splice region of rat c-amp phosphodiesterase,2 nmr, 7 structures
90c4jmrA_



not modelled 9.6 25
PDB header:viral protein/peptide
Chain: A: PDB Molecule:gag protein;
PDBTitle: a unique spumavirus gag n-terminal domain with functional properties2 of orthoretroviral matrix and capsid
91d1ttea1



not modelled 9.5 24
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
92d1u9la_



not modelled 9.5 16
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:NusA extra C-terminal domains
93c2va8A_



not modelled 9.1 17
PDB header:hydrolase
Chain: A: PDB Molecule:ski2-type helicase;
PDBTitle: dna repair helicase hel308
94c1dgsB_



not modelled 9.1 23
PDB header:ligase
Chain: B: PDB Molecule:dna ligase;
PDBTitle: crystal structure of nad+-dependent dna ligase from t.2 filiformis
95d1kfta_



not modelled 8.9 9
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Excinuclease UvrC C-terminal domain
96c1kftA_



not modelled 8.9 9
PDB header:dna binding protein
Chain: A: PDB Molecule:excinuclease abc subunit c;
PDBTitle: solution structure of the c-terminal domain of uvrc from e-2 coli
97c4m9mA_



not modelled 8.9 18
PDB header:viral protein
Chain: A: PDB Molecule:ns2b-ns3 protease;
PDBTitle: ns2b-ns3 protease from dengue virus at ph 8.5
98c2owoA_



not modelled 8.7 18
PDB header:ligase/dna
Chain: A: PDB Molecule:dna ligase;
PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate
99d2ijob1



not modelled 8.6 18
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases

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