Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3395c_(-)_3811202_3811816
DateFri Aug 9 18:20:06 BST 2019
Unique Job ID62f2a54baf637f91
SequenceMTAAFASDQR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:44.356 Y:54.641 Z:72.829
Model (left) based on template c3cmwA_
Top template information
PDB header:recombination/dna
Chain: A: PDB Molecule:protein reca;
PDBTitle: mechanism of homologous recombination from the reca-ssdna/dsdna2 structures
Confidence and coverage
Confidence: 99.6% Coverage: 66%
135 residues ( 66% of your sequence) have been modelled with 99.6% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
188 residues ( 92%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3cmwA_



99.6 20
PDB header:recombination/dna
Chain: A: PDB Molecule:protein reca;
PDBTitle: mechanism of homologous recombination from the reca-ssdna/dsdna2 structures
2c3cmuA_



99.3 23
PDB header:recombination/dna
Chain: A: PDB Molecule:protein reca;
PDBTitle: mechanism of homologous recombination from the reca-ssdna/dsdna2 structures
3c2recB_



99.0 24
PDB header:helicase
PDB COMPND:
4c1xp8A_



99.0 27
PDB header:dna binding protein
Chain: A: PDB Molecule:reca protein;
PDBTitle: deinococcus radiodurans reca in complex with atp-gamma-s
5c3cmvG_



98.9 25
PDB header:recombination
Chain: G: PDB Molecule:protein reca;
PDBTitle: mechanism of homologous recombination from the reca-ssdna/dsdna2 structures
6c2zroA_



98.8 30
PDB header:hydrolase
Chain: A: PDB Molecule:protein reca;
PDBTitle: msreca adp form iv
7c3hr8A_



98.8 24
PDB header:recombination
Chain: A: PDB Molecule:protein reca;
PDBTitle: crystal structure of thermotoga maritima reca
8d1mo6a1



98.7 31
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
9d1xp8a1



98.6 24
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
10d1u94a1



98.6 23
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
11d1ubea1



98.6 29
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
12c3io5B_



98.5 16
PDB header:dna binding protein
Chain: B: PDB Molecule:recombination and repair protein;
PDBTitle: crystal structure of a dimeric form of the uvsx recombinase core2 domain from enterobacteria phage t4
13c1oftC_



97.6 16
PDB header:bacterial cell division inhibitor
Chain: C: PDB Molecule:hypothetical protein pa3008;
PDBTitle: crystal structure of sula from pseudomonas aeruginosa
14d1ofux_



97.4 16
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Bacterial cell division inhibitor SulA
15d2i1qa2



90.4 17
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
16d1v5wa_



88.9 15
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
17c2w0mA_



87.5 23
PDB header:unknown function
Chain: A: PDB Molecule:sso2452;
PDBTitle: crystal structure of sso2452 from sulfolobus solfataricus p2
18c3bh0A_



85.9 14
PDB header:replication
Chain: A: PDB Molecule:dnab-like replicative helicase;
PDBTitle: atpase domain of g40p
19d1tf7a2



84.7 16
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
20c2dr3A_



84.2 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:upf0273 protein ph0284;
PDBTitle: crystal structure of reca superfamily atpase ph0284 from pyrococcus2 horikoshii ot3
21c4wiaA_



not modelled 84.1 18
PDB header:atp-binding protein
Chain: A: PDB Molecule:putative flagella-related protein h;
PDBTitle: crystal structure of flagellar accessory protein flah from2 methanocaldococcus jannaschii
22c2zjbB_



not modelled 83.0 15
PDB header:recombination
Chain: B: PDB Molecule:meiotic recombination protein dmc1/lim15 homolog;
PDBTitle: crystal structure of the human dmc1-m200v polymorphic2 variant
23d1pzna2



not modelled 82.4 13
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
24c1pznG_



not modelled 78.1 13
PDB header:recombination
Chain: G: PDB Molecule:dna repair and recombination protein rad51;
PDBTitle: rad51 (rada)
25d1szpa2



not modelled 76.2 13
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
26c1t4gA_



not modelled 74.7 16
PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rada;
PDBTitle: atpase in complex with amp-pnp
27c4ydsA_



not modelled 73.3 11
PDB header:hydrolase
Chain: A: PDB Molecule:flagella-related protein h;
PDBTitle: flah from sulfolobus acidocaldarius with atp and mg-ion
28c4a1fB_



not modelled 72.8 20
PDB header:hydrolase
Chain: B: PDB Molecule:replicative dna helicase;
PDBTitle: crystal structure of c-terminal domain of helicobacter2 pylori dnab helicase
29c3bgwD_



not modelled 71.2 11
PDB header:replication
Chain: D: PDB Molecule:dnab-like replicative helicase;
PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase
30c3bs4A_



not modelled 70.8 8
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ph0321;
PDBTitle: crystal structure of uncharacterized protein ph0321 from pyrococcus2 horikoshii in complex with an unknown peptide
31d1n0wa_



not modelled 68.9 11
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
32c2dflA_



not modelled 68.7 19
PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rada;
PDBTitle: crystal structure of left-handed rada filament
33c3ldaA_



not modelled 68.5 13
PDB header:dna binding protein
Chain: A: PDB Molecule:dna repair protein rad51;
PDBTitle: yeast rad51 h352y filament interface mutant
34c1pznA_



not modelled 66.0 13
PDB header:recombination
Chain: A: PDB Molecule:dna repair and recombination protein rad51;
PDBTitle: rad51 (rada)
35c2v3cC_



not modelled 62.5 21
PDB header:signaling protein
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii
36c2cvhB_



not modelled 54.3 22
PDB header:dna binding protein
Chain: B: PDB Molecule:dna repair and recombination protein radb;
PDBTitle: crystal structure of the radb recombinase
37c1szpC_



not modelled 51.5 13
PDB header:dna binding protein
Chain: C: PDB Molecule:dna repair protein rad51;
PDBTitle: a crystal structure of the rad51 filament
38d1tf7a1



not modelled 50.1 16
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
39d1nlfa_



not modelled 48.0 26
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
40c5jzcG_



not modelled 47.8 11
PDB header:dna binding protein
Chain: G: PDB Molecule:dna repair protein rad51 homolog 1;
PDBTitle: helical filament
41c4nmnA_



not modelled 47.0 21
PDB header:replication
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: aquifex aeolicus replicative helicase (dnab) complexed with adp, at2 3.3 resolution
42c5gafi_



not modelled 44.0 19
PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l10;
PDBTitle: rnc in complex with srp
43c2ztsB_



not modelled 42.6 17
PDB header:atp-binding protein
Chain: B: PDB Molecule:putative uncharacterized protein ph0186;
PDBTitle: crystal structure of kaic-like protein ph0186 from hyperthermophilic2 archaea pyrococcus horikoshii ot3
44c1u9iA_



not modelled 39.5 19
PDB header:circadian clock protein
Chain: A: PDB Molecule:kaic;
PDBTitle: crystal structure of circadian clock protein kaic with phosphorylation2 sites
45c1qzwC_



not modelled 38.1 16
PDB header:signaling protein/rna
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication
46c1e1cA_



not modelled 37.6 13
PDB header:isomerase
Chain: A: PDB Molecule:methylmalonyl-coa mutase alpha chain;
PDBTitle: methylmalonyl-coa mutase h244a mutant
47d1xi8a3



not modelled 36.7 15
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
48c6qelB_



not modelled 36.7 15
PDB header:replication
Chain: B: PDB Molecule:replicative dna helicase;
PDBTitle: e. coli dnabc apo complex
49d2jfga1



not modelled 34.2 25
Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
50c5fmsA_



not modelled 33.4 15
PDB header:transport protein
Chain: A: PDB Molecule:intraflagellar transport protein 52 homolog;
PDBTitle: mmift52 n-terminal domain
51c3b9qA_



not modelled 32.8 17
PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
52d1wu2a3



not modelled 30.2 15
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
53c3rhtB_



not modelled 30.2 29
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:(gatase1)-like protein;
PDBTitle: crystal structure of type 1 glutamine amidotransferase (gatase1)-like2 protein from planctomyces limnophilus
54c3kbqA_



not modelled 29.8 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:protein ta0487;
PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum
55d1okkd2



not modelled 27.6 15
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
56c5fmrC_



not modelled 27.4 15
PDB header:transport protein
Chain: C: PDB Molecule:intraflagellar transport protein component ift52;
PDBTitle: crift52 n-terminal domain
57d1cr2a_



not modelled 26.9 14
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
58c5jwqA_



not modelled 25.6 16
PDB header:transcription regulator
Chain: A: PDB Molecule:circadian clock protein kinase kaic;
PDBTitle: crystal structure of kaic s431e in complex with foldswitch-stabilized2 kaib from thermosynechococcus elongatus
59c5l3rC_



not modelled 23.8 13
PDB header:protein transport
Chain: C: PDB Molecule:signal recognition particle 54 kda protein, chloroplastic;
PDBTitle: structure of the gtpase heterodimer of chloroplast srp54 and ftsy from2 arabidopsis thaliana
60d2ftsa3



not modelled 23.3 18
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
61d2h1qa1



not modelled 22.5 24
Fold:PLP-dependent transferase-like
Superfamily:Dhaf3308-like
Family:Dhaf3308-like
62c1zu4A_



not modelled 22.3 21
PDB header:protein transport
Chain: A: PDB Molecule:ftsy;
PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212
63d1oi7a1



not modelled 21.6 14
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
64c4tskA_



not modelled 20.9 13
PDB header:oxidoreductase,isomerase
Chain: A: PDB Molecule:ketol-acid reductoisomerase;
PDBTitle: ketol-acid reductoisomerase from alicyclobacillus acidocaldarius
65c1m7lA_



not modelled 20.6 29
PDB header:sugar binding protein
Chain: A: PDB Molecule:pulmonary surfactant-associated protein d;
PDBTitle: solution structure of the coiled-coil trimerization domain2 from lung surfactant protein d
66d1np3a2



not modelled 19.9 21
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
67c3bicA_



not modelled 19.5 16
PDB header:isomerase
Chain: A: PDB Molecule:methylmalonyl-coa mutase, mitochondrial precursor;
PDBTitle: crystal structure of human methylmalonyl-coa mutase
68d2nu7a1



not modelled 18.6 19
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
69c2iy3A_



not modelled 18.6 16
PDB header:rna-binding
Chain: A: PDB Molecule:signal recognition particle protein,signal recognition
PDBTitle: structure of the e. coli signal regognition particle
70d1euca1



not modelled 18.5 26
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
71c5yeqB_



not modelled 18.5 14
PDB header:isomerase
Chain: B: PDB Molecule:ketol-acid reductoisomerase (nadp(+));
PDBTitle: the structure of sac-kari protein
72c2qy9A_



not modelled 16.8 15
PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the ng+1 construct of the e. coli srp receptor2 ftsy
73d2nqra3



not modelled 16.6 18
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
74c2q5cA_



not modelled 16.3 11
PDB header:transcription
Chain: A: PDB Molecule:ntrc family transcriptional regulator;
PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum
75d1pjqa1



not modelled 16.0 17
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Siroheme synthase N-terminal domain-like
76c4lhbC_



not modelled 15.9 18
PDB header:transferase
Chain: C: PDB Molecule:molybdopterin adenylyltransferase;
PDBTitle: crystal structure of tungsten cofactor synthesizing protein moab from2 pyrococcus furiosus
77c2vyeA_



not modelled 15.3 15
PDB header:hydrolase/dna
Chain: A: PDB Molecule:replicative dna helicase;
PDBTitle: crystal structure of the dnac-ssdna complex
78c3iynR_



not modelled 14.9 30
PDB header:virus
Chain: R: PDB Molecule:hexon-associated protein;
PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5
79c3w01A_



not modelled 14.9 13
PDB header:transferase
Chain: A: PDB Molecule:heptaprenylglyceryl phosphate synthase;
PDBTitle: crystal structure of pcrb complexed with peg from staphylococcus2 aureus subsp. aureus mu3
80d1kola2



not modelled 14.7 22
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Alcohol dehydrogenase-like, C-terminal domain
81c2q9cA_



not modelled 13.7 20
PDB header:signaling protein
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of ftsy:gmppnp with mgcl complex
82d1uz5a3



not modelled 13.4 21
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MoeA central domain-like
83c2j289_



not modelled 13.3 19
PDB header:ribosome
Chain: 9: PDB Molecule:signal recognition particle 54;
PDBTitle: model of e. coli srp bound to 70s rncs
84c1vmaA_



not modelled 13.2 20
PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
85c2f1rA_



not modelled 12.9 26
PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis
PDBTitle: crystal structure of molybdopterin-guanine biosynthesis2 protein b (mobb)
86c4cgbE_



not modelled 12.2 10
PDB header:cell cycle
Chain: E: PDB Molecule:echinoderm microtubule-associated protein-like 2;
PDBTitle: crystal structure of the trimerization domain of eml2
87c4xdzB_



not modelled 12.1 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:ketol-acid reductoisomerase;
PDBTitle: holo structure of ketol-acid reductoisomerase from ignisphaera2 aggregans
88c2g4rB_



not modelled 11.7 17
PDB header:biosynthetic protein
Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein;
PDBTitle: anomalous substructure of moga
89c2pjuD_



not modelled 11.6 12
PDB header:transcription
Chain: D: PDB Molecule:propionate catabolism operon regulatory protein;
PDBTitle: crystal structure of propionate catabolism operon regulatory protein2 prpr
90c5mc9B_



not modelled 11.3 26
PDB header:cell adhesion
Chain: B: PDB Molecule:laminin subunit beta-1;
PDBTitle: crystal structure of the heterotrimeric integrin-binding region of2 laminin-111
91c2og2A_



not modelled 11.2 17
PDB header:protein transport
Chain: A: PDB Molecule:putative signal recognition particle receptor;
PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
92c3fk4A_



not modelled 10.9 14
PDB header:isomerase
Chain: A: PDB Molecule:rubisco-like protein;
PDBTitle: crystal structure of rubisco-like protein from bacillus2 cereus atcc 14579
93d1y5ea1



not modelled 10.9 13
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like
94c3dm5A_



not modelled 10.8 19
PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling the2 ribonucleic core of the signal recognition particle from the archaeon3 pyrococcus furiosus.
95c4cgbA_



not modelled 10.7 10
PDB header:cell cycle
Chain: A: PDB Molecule:echinoderm microtubule-associated protein-like 2;
PDBTitle: crystal structure of the trimerization domain of eml2
96c2yfqA_



not modelled 10.7 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:nad-specific glutamate dehydrogenase;
PDBTitle: crystal structure of glutamate dehydrogenase from2 peptoniphilus asaccharolyticus
97c3rfqC_



not modelled 10.7 23
PDB header:biosynthetic protein
Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2;
PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum
98c4bucA_



not modelled 9.8 11
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase;
PDBTitle: crystal structure of murd ligase from thermotoga maritima in apo form
99d1mkza_



not modelled 9.7 18
Fold:Molybdenum cofactor biosynthesis proteins
Superfamily:Molybdenum cofactor biosynthesis proteins
Family:MogA-like

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