Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3401_(-)_3818222_3820582
DateFri Aug 9 18:20:07 BST 2019
Unique Job ID3f0f922c9c9dfd63
SequenceMITEDAFPVE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:80.942 Y:58.934 Z:82.582
Model (left) based on template c4ktrE_
Top template information
PDB header:transferase
Chain: E: PDB Molecule:glycoside hydrolase family 65 central catalytic;
PDBTitle: crystal structure of 2-o-alpha-glucosylglycerol phosphorylase in2 complex with isofagomine and glycerol
Confidence and coverage
Confidence:100.0% Coverage: 92%
726 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ktrE_



100.0 25
PDB header:transferase
Chain: E: PDB Molecule:glycoside hydrolase family 65 central catalytic;
PDBTitle: crystal structure of 2-o-alpha-glucosylglycerol phosphorylase in2 complex with isofagomine and glycerol
2c1h54B_



100.0 28
PDB header:hydrolase
Chain: B: PDB Molecule:maltose phosphorylase;
PDBTitle: maltose phosphorylase from lactobacillus brevis
3c2rdyB_



100.0 13
PDB header:hydrolase
Chain: B: PDB Molecule:bh0842 protein;
PDBTitle: crystal structure of a putative glycoside hydrolase family2 protein from bacillus halodurans
4c4ufcA_



100.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:gh95;
PDBTitle: crystal structure of the gh95 enzyme bacova_03438
5c2eacB_



100.0 16
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-fucosidase;
PDBTitle: crystal structure of 1,2-a-l-fucosidase from2 bifidobacterium bifidum in complex with3 deoxyfuconojirimycin
6d1h54a1



100.0 32
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glycosyltransferase family 36 C-terminal domain
7d1h54a2



100.0 20
Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Glycosyltransferase family 36 N-terminal domain
8c4zlgA_



100.0 13
PDB header:transferase
Chain: A: PDB Molecule:putative b-glycan phosphorylase;
PDBTitle: cellobionic acid phosphorylase - gluconic acid complex
9c2cqtA_



100.0 13
PDB header:transferase
Chain: A: PDB Molecule:cellobiose phosphorylase;
PDBTitle: crystal structure of cellvibrio gilvus cellobiose phosphorylase2 crystallized from sodium/potassium phosphate
10c1v7wA_



100.0 11
PDB header:transferase
Chain: A: PDB Molecule:chitobiose phosphorylase;
PDBTitle: crystal structure of vibrio proteolyticus chitobiose phosphorylase in2 complex with glcnac
11d1v7wa1



100.0 13
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glycosyltransferase family 36 C-terminal domain
12c5h42A_



99.9 13
PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of 1,2-beta-oligoglucan phosphorylase from2 lachnoclostridium phytofermentans in complex with alpha-d-glucose-1-3 phosphate
13c6ggyA_



99.9 15
PDB header:hydrolase
Chain: A: PDB Molecule:laminaribiose phosphorylase;
PDBTitle: paenibacillus sp. ym1 laminaribiose phosphorylase with sulphate bound
14c5nz7A_



99.9 12
PDB header:hydrolase
Chain: A: PDB Molecule:cellodextrin phosphorylase;
PDBTitle: clostridium thermocellum cellodextrin phosphorylase ligand free form
15c5nz8A_



99.8 15
PDB header:hydrolase
Chain: A: PDB Molecule:cellodextrin phosphorylase;
PDBTitle: clostridium thermocellum cellodextrin phosphorylase with cellotetraose2 and phosphate bound
16c6i60B_



99.7 9
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-rhamnosidase;
PDBTitle: structure of alpha-l-rhamnosidase from dictyoglumus thermophilum
17c6gszA_



99.7 13
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-l-rhamnosidase;
PDBTitle: crystal structure of native alfa-l-rhamnosidase from aspergillus2 terreus
18c2okxB_



99.6 16
PDB header:hydrolase
Chain: B: PDB Molecule:rhamnosidase b;
PDBTitle: crystal structure of gh78 family rhamnosidase of bacillus sp. gl1 at2 1.9 a
19c3cihA_



99.5 13
PDB header:hydrolase
Chain: A: PDB Molecule:putative alpha-rhamnosidase;
PDBTitle: crystal structure of a putative alpha-rhamnosidase from2 bacteroides thetaiotaomicron
20c1ug9A_



99.5 16
PDB header:hydrolase
Chain: A: PDB Molecule:glucodextranase;
PDBTitle: crystal structure of glucodextranase from arthrobacter globiformis i42
21c1lf6A_



not modelled 99.4 11
PDB header:hydrolase
Chain: A: PDB Molecule:glucoamylase;
PDBTitle: crystal structure of bacterial glucoamylase
22c3w5mA_



not modelled 99.4 14
PDB header:hydrolase
Chain: A: PDB Molecule:putative rhamnosidase;
PDBTitle: crystal structure of streptomyces avermitilis alpha-l-rhamnosidase
23c3c67B_



not modelled 99.1 14
PDB header:hydrolase
Chain: B: PDB Molecule:uncharacterized protein ygjk;
PDBTitle: escherichia coli k12 ygjk in a complexed with glucose
24c5mqrA_



not modelled 98.7 12
PDB header:hydrolase
Chain: A: PDB Molecule:beta-l-arabinobiosidase;
PDBTitle: sialidase bt_1020
25c4xhcB_



not modelled 98.7 16
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-l-rhamnosidase;
PDBTitle: rhamnosidase from klebsiella oxytoca with rhamnose bound
26c5fjsB_



not modelled 98.6 14
PDB header:hydrolase
Chain: B: PDB Molecule:glucosylceramidase;
PDBTitle: bacterial beta-glucosidase reveals the structural and functional2 basis of genetic defects in human glucocerebrosidase 2 (gba2)3 disorders
27c2ww1B_



not modelled 98.5 13
PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-1,2-mannosidase;
PDBTitle: structure of the family gh92 inverting mannosidase bt39902 from bacteroides thetaiotaomicron vpi-5482 in complex with3 thiomannobioside
28c5z3dA_



not modelled 98.5 16
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase 15-related protein;
PDBTitle: glycosidase f290y
29c2wvyA_



not modelled 98.0 15
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-1,2-mannosidase;
PDBTitle: structure of the family gh92 inverting mannosidase bt21992 from bacteroides thetaiotaomicron vpi-5482
30c2jg0A_



not modelled 98.0 16
PDB header:hydrolase
Chain: A: PDB Molecule:periplasmic trehalase;
PDBTitle: family 37 trehalase from escherichia coli in complex with 1-2 thiatrehazolin
31d2jg0a1



not modelled 98.0 16
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Trehalase-like
32d1ulva1



not modelled 97.8 15
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Bacterial glucoamylase C-terminal domain-like
33c2z07A_



not modelled 97.8 13
PDB header:hydrolase
Chain: A: PDB Molecule:putative uncharacterized protein ttha0978;
PDBTitle: crystal structure of uncharacterized conserved protein from thermus2 thermophilus hb8
34c6f92B_



not modelled 97.8 11
PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-1,2-mannosidase;
PDBTitle: structure of the family gh92 alpha-mannosidase bt3965 from bacteroides2 thetaiotaomicron in complex with mannoimidazole (mani)
35d1lf6a1



not modelled 97.7 13
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Bacterial glucoamylase C-terminal domain-like
36c2zzrA_



not modelled 97.7 15
PDB header:hydrolase
Chain: A: PDB Molecule:unsaturated glucuronyl hydrolase;
PDBTitle: crystal structure of unsaturated glucuronyl hydrolase from2 streptcoccus agalactiae
37c5z73A_



not modelled 97.5 14
PDB header:hydrolase
Chain: A: PDB Molecule:alr0819 protein;
PDBTitle: crystal structure of alkaline/neutral invertase invb from anabaena sp.2 pcc 7120
38d2d5ja1



not modelled 97.4 16
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glycosyl Hydrolase Family 88
39c2vn4A_



not modelled 97.4 13
PDB header:hydrolase
Chain: A: PDB Molecule:glucoamylase;
PDBTitle: glycoside hydrolase family 15 glucoamylase from hypocrea jecorina
40c5swiD_



not modelled 97.2 11
PDB header:hydrolase
Chain: D: PDB Molecule:sugar hydrolase;
PDBTitle: crystal structure of spgh92 in complex with mannose
41c6f90A_



not modelled 96.7 12
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-1,2-mannosidase, putative;
PDBTitle: structure of the family gh92 alpha-mannosidase bt3130 from bacteroides2 thetaiotaomicron in complex with mannoimidazole (mani)
42c5gorE_



not modelled 96.7 14
PDB header:hydrolase
Chain: E: PDB Molecule:alkaline invertase;
PDBTitle: crystal structure of alkaline invertase inva from anabaena sp. pcc2 7120
43c5n6nC_



not modelled 96.4 14
PDB header:signaling protein
Chain: C: PDB Molecule:neutral trehalase;
PDBTitle: crystal structure of the 14-3-3:neutral trehalase nth1 complex
44c5mhfA_



not modelled 94.2 18
PDB header:hydrolase
Chain: A: PDB Molecule:mannosyl-oligosaccharide glucosidase;
PDBTitle: murine endoplasmic reticulum alpha-glucosidase i with n-9'-2 methoxynonyl-1-deoxynojirimycin
45d1ulva4



not modelled 94.1 15
Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Bacterial glucoamylase N-terminal domain-like
46d1gaia_



not modelled 94.1 12
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glucoamylase
47c6fhvA_



not modelled 93.9 13
PDB header:hydrolase
Chain: A: PDB Molecule:glucoamylase;
PDBTitle: crystal structure of penicillium oxalicum glucoamylase
48c6fhwB_



not modelled 93.7 11
PDB header:hydrolase
Chain: B: PDB Molecule:glucoamylase p;
PDBTitle: structure of hormoconis resinae glucoamylase
49c5m4aA_



not modelled 93.6 11
PDB header:hydrolase
Chain: A: PDB Molecule:neutral trehalase;
PDBTitle: neutral trehalase nth1 from saccharomyces cerevisiae in complex with2 trehalose
50c5d0fB_



not modelled 93.3 13
PDB header:sugar binding protein
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the candida glabrata glycogen debranching enzyme2 (e564q) in complex with maltopentaose
51d1lf6a2



not modelled 92.6 9
Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Bacterial glucoamylase N-terminal domain-like
52c4qk0C_



not modelled 91.9 16
PDB header:hydrolase
Chain: C: PDB Molecule:gh127 beta-l-arabinofuranoside;
PDBTitle: crystal structure of ara127n-se, a gh127 beta-l-arabinofuranosidase2 from geobacillus stearothermophilus t6
53c3wkxA_



not modelled 91.2 17
PDB header:hydrolase
Chain: A: PDB Molecule:non-reducing end beta-l-arabinofuranosidase;
PDBTitle: crystal structure of gh127 beta-l-arabinofuranosidase hypba1 from2 bifidobacterium longum arabinose complex form
54d2fbaa1



not modelled 91.1 18
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Glucoamylase
55c5uz9A_



not modelled 80.7 20
PDB header:immune system/rna
Chain: A: PDB Molecule:crispr-associated protein csy1;
PDBTitle: cryo em structure of anti-crisprs, acrf1 and acrf2, bound to type i-f2 crrna-guided crispr surveillance complex
56c2xsgB_



not modelled 78.5 14
PDB header:hydrolase
Chain: B: PDB Molecule:ccman5;
PDBTitle: structure of the gh92 family glycosyl hydrolase ccman5
57c3wiwA_



not modelled 76.2 13
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase family 88;
PDBTitle: crystal structure of unsaturated glucuronyl hydrolase specific for2 heparin
58c6ex6A_



not modelled 71.6 15
PDB header:hydrolase
Chain: A: PDB Molecule:six-hairpin glycosidase;
PDBTitle: the gh127, beta-arabinofuranosidase, bt3674
59c4mu9B_



not modelled 67.8 19
PDB header:hydrolase
Chain: B: PDB Molecule:glycoside hydrolase family 73;
PDBTitle: crystal structure of a putative glycosylhydrolase (bt_3782) from2 bacteroides thetaiotaomicron vpi-5482 at 1.89 a resolution
60c3vw5B_



not modelled 58.2 13
PDB header:isomerase
Chain: B: PDB Molecule:cellobiose 2-epimerase;
PDBTitle: crystal structure of sugar epimerase from ruminal bacterium
61d1g9ga_



not modelled 47.3 14
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Cellulases catalytic domain
62c2p0vA_



not modelled 47.1 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein bt3781;
PDBTitle: crystal structure of bt3781 protein from bacteroides thetaiotaomicron,2 northeast structural genomics target btr58
63d2p0va1



not modelled 47.1 13
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:CPF0428-like
64c4v1sA_



not modelled 40.0 9
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-1,6-mannanase;
PDBTitle: structure of the gh76 alpha-mannanase bt2949 from2 bacteroides thetaiotaomicron
65c5ohcB_



not modelled 38.0 18
PDB header:hydrolase
Chain: B: PDB Molecule:hydrolase;
PDBTitle: crystal structure of mycolicibacterium hassiacum glucosylglycerate2 hydrolase (mhggh) in complex with glycerol
66c3qspB_



not modelled 35.1 20
PDB header:hydrolase
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: analysis of a new family of widely distributed metal-independent alpha2 mannosidases provides unique insight into the processing of n-linked3 glycans, streptococcus pneumoniae sp_2144 non-productive substrate4 complex with alpha-1,6-mannobiose
67c4el8A_



not modelled 33.1 18
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 48;
PDBTitle: the unliganded structure of c.bescii cela gh48 module
68d1wgha_



not modelled 29.6 26
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
69c5zigD_



not modelled 27.8 14
PDB header:isomerase
Chain: D: PDB Molecule:cellobiose 2-epimerase;
PDBTitle: the structure of cellobiose 2-epimerase from spirochaeta thermophila2 dsm 6192
70c5hopA_



not modelled 26.2 19
PDB header:hydrolase
Chain: A: PDB Molecule:lmo0182 protein;
PDBTitle: 1.65 angstrom resolution crystal structure of lmo0182 (residues 1-245)2 from listeria monocytogenes egd-e
71c4jjjA_



not modelled 23.4 18
PDB header:hydrolase
Chain: A: PDB Molecule:cellulose 1,4-beta-cellobiosidase;
PDBTitle: the structure of t. fusca gh48 d224n mutant
72c4j5tA_



not modelled 23.3 13
PDB header:hydrolase
Chain: A: PDB Molecule:mannosyl-oligosaccharide glucosidase;
PDBTitle: crystal structure of processing alpha-glucosidase i
73d1lnsa2



not modelled 23.0 18
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:PepX C-terminal domain-like
74c2k85A_



not modelled 21.8 18
PDB header:protein binding
Chain: A: PDB Molecule:glucocorticoid receptor dna-binding factor 1;
PDBTitle: p190-a rhogap ff1 domain
75c5x32B_



not modelled 21.4 14
PDB header:isomerase
Chain: B: PDB Molecule:n-acylglucosamine 2-epimerase;
PDBTitle: crystal structure of d-mannose isomerase
76c4bojC_



not modelled 20.2 11
PDB header:hydrolase
Chain: C: PDB Molecule:alpha-1,6-mannanase;
PDBTitle: crystal structure of bacillus circulans tn-31 aman6 in2 complex with mannobiose
77d2nvpa1



not modelled 19.6 15
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:CPF0428-like
78c4z4lA_



not modelled 19.2 14
PDB header:isomerase
Chain: A: PDB Molecule:cellobiose 2-epimerase;
PDBTitle: crystal structure of cellobiose 2-epimerase from caldicellulosiruptor2 saccharolyticus dsm 8903
79c3d82A_



not modelled 19.1 21
PDB header:metal binding protein
Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein;
PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution
80c5zhbB_



not modelled 18.1 10
PDB header:isomerase
Chain: B: PDB Molecule:cellobiose 2-epimerase;
PDBTitle: structure of cellobiose 2-epimerase from bacillus thermoamylovorans2 b4167
81c5c0rA_



not modelled 17.9 12
PDB header:viral protein/immune system
Chain: A: PDB Molecule:hemagglutinin, envelope glycoprotein, fibritin fusion
PDBTitle: crystal structure of a generation 3 influenza hemagglutinin stabilized2 stem complexed with the broadly neutralizing antibody c179
82c4fusA_



not modelled 17.5 18
PDB header:hydrolase
Chain: A: PDB Molecule:rtx toxins and related ca2+-binding protein;
PDBTitle: the x-ray structure of hahella chejuensis family 48 glycosyl hydrolase
83c2ky8A_



not modelled 16.9 44
PDB header:transcription/dna
Chain: A: PDB Molecule:methyl-cpg-binding domain protein 2;
PDBTitle: solution structure and dynamic analysis of chicken mbd2 methyl binding2 domain bound to a target methylated dna sequence
84c5no8A_



not modelled 16.7 21
PDB header:lyase
Chain: A: PDB Molecule:baccell_00875;
PDBTitle: polysaccharide lyase baccell_00875
85c4c1sA_



not modelled 15.8 14
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 76 mannosidase;
PDBTitle: glycoside hydrolase family 76 (mannosidase) bt3792 from2 bacteroides thetaiotaomicron vpi-5482
86c3fjsC_



not modelled 15.5 16
PDB header:biosynthetic protein
Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold;
PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution
87c5mmi7_



not modelled 15.1 33
PDB header:ribosome
Chain: 7: PDB Molecule:50s ribosomal protein 6, chloroplastic;
PDBTitle: structure of the large subunit of the chloroplast ribosome
88c5j4fB_



not modelled 15.0 6
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the n-terminally his6-tagged hp0902, an2 uncharacterized protein from helicobacter pylori 26695
89c5mlc8_



not modelled 14.9 33
PDB header:ribosome
Chain: 8: PDB Molecule:psrp6, chloroplastic;
PDBTitle: cryo-em structure of the spinach chloroplast ribosome reveals the2 location of plastid-specific ribosomal proteins and extensions
90d2e45a1



not modelled 14.5 33
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
91c2avpA_



not modelled 14.0 17
PDB header:de novo protein
Chain: A: PDB Molecule:synthetic consensus tpr protein;
PDBTitle: crystal structure of an 8 repeat consensus tpr superhelix
92d1g0wa1



not modelled 13.7 16
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
93d1sfua_



not modelled 13.1 20
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Z-DNA binding domain
94d1qh4a1



not modelled 12.6 16
Fold:Guanido kinase N-terminal domain
Superfamily:Guanido kinase N-terminal domain
Family:Guanido kinase N-terminal domain
95c6ar6A_



not modelled 12.5 10
PDB header:toxin/protein binding
Chain: A: PDB Molecule:toxin b;
PDBTitle: clostridioides difficile toxinb with dld-4 darpin
96c4e2gE_



not modelled 12.4 16
PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:cupin 2 conserved barrel domain protein;
PDBTitle: crystal structure of cupin fold protein sthe2323 from sphaerobacter2 thermophilus
97d2ysca1



not modelled 12.4 33
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
98c4kkkA_



not modelled 12.4 17
PDB header:hydrolase
Chain: A: PDB Molecule:exoglucanase s;
PDBTitle: complex structure of catalytic domain of clostridium cellulovorans2 exgs and cellotetraose
99d1l6ja1



not modelled 12.3 13
Fold:PGBD-like
Superfamily:PGBD-like
Family:MMP N-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite