Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3412_(-)_3831906_3832316
DateFri Aug 9 18:20:08 BST 2019
Unique Job ID236a239471122f2d
SequenceVRDHLPPGLP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:24.544 Y:19.889 Z:21.176
Model (left) based on template c2jmsA_
Top template information
PDB header:signaling protein
Chain: A: PDB Molecule:pheromone en-6;
PDBTitle: nmr structure of en-6 pheromone from the antarctic ciliate2 euplotes nobilii
Confidence and coverage
Confidence: 39.5% Coverage: 15%
20 residues ( 15% of your sequence) have been modelled with 39.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2jmsA_
39.5 45
PDB header:signaling protein
Chain: A: PDB Molecule:pheromone en-6;
PDBTitle: nmr structure of en-6 pheromone from the antarctic ciliate2 euplotes nobilii
2c6hzkB_
26.4 18
PDB header:transferase
Chain: B: PDB Molecule:phosphoribulokinase;
PDBTitle: crystal structure of redox-inhibited phosphoribulokinase from2 synechococcus sp. (strain pcc 6301)
3d2idob1
24.6 27
Fold:DNA polymerase III theta subunit-like
Superfamily:DNA polymerase III theta subunit-like
Family:DNA polymerase III theta subunit-like
4d1a7ja_
21.8 9
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Phosphoribulokinase/pantothenate kinase
5c2kk1A_
19.5 55
PDB header:transferase
Chain: A: PDB Molecule:tyrosine-protein kinase abl2;
PDBTitle: solution structure of c-terminal domain of tyrosine-protein2 kinase abl2 from homo sapiens, northeast structural3 genomics consortium (nesg) target hr5537a
6c2jp3A_
18.3 27
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
7c1zzpA_
17.5 27
PDB header:transferase
Chain: A: PDB Molecule:proto-oncogene tyrosine-protein kinase abl1;
PDBTitle: solution structure of the f-actin binding domain of bcr-2 abl/c-abl
8c2k5cA_
17.0 24
PDB header:metal binding protein
Chain: A: PDB Molecule:uncharacterized protein pf0385;
PDBTitle: nmr structure for pf0385
9c5wc3S_
16.3 29
PDB header:protein transport
Chain: S: PDB Molecule:spoiiiag, stage iii sporulation engulfment assemblyprotein;
PDBTitle: spoiiiag
10d1y4oa1
15.8 28
Fold:Profilin-like
Superfamily:Roadblock/LC7 domain
Family:Roadblock/LC7 domain
11d1v7ba2
15.6 21
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
12c3tqcB_
14.8 19
PDB header:transferase
Chain: B: PDB Molecule:pantothenate kinase;
PDBTitle: structure of the pantothenate kinase (coaa) from coxiella burnetii
13c5ohdB_
14.7 33
PDB header:membrane protein
Chain: B: PDB Molecule:growth hormone receptor;
PDBTitle: putative inactive (dormant) dimeric state of ghr transmembrane domain
14d2hz5a1
13.6 29
Fold:Profilin-like
Superfamily:Roadblock/LC7 domain
Family:Roadblock/LC7 domain
15c3mb2J_
13.4 21
PDB header:isomerase
Chain: J: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - beta subunit;
PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily
16c3n23E_
13.4 25
PDB header:hydrolase
Chain: E: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a;
PDBTitle: crystal structure of the high affinity complex between ouabain and the2 e2p form of the sodium-potassium pump
17c5f34A_
12.8 34
PDB header:transferase
Chain: A: PDB Molecule:phosphatidylinositol mannoside acyltransferase;
PDBTitle: crystal structure of membrane associated pata from mycobacterium2 smegmatis in complex with s-hexadecyl coenzyme a - p21 space group
18c2ktlA_
12.1 17
PDB header:ligase
Chain: A: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: structure of c-terminal domain from mttyrrs of a. nidulans
19c4bwcA_
11.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:phospholipase b-like 1;
PDBTitle: x-ray structure of a phospholiapse b like protein 1 from2 bovine kidneys
20d1sq5a_
11.7 23
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Phosphoribulokinase/pantothenate kinase
21d2o34a1
not modelled 11.6 33
Fold:T-fold
Superfamily:ApbE-like
Family:DVU1097-like
22c6bxtB_
not modelled 11.6 55
PDB header:membrane protein
Chain: B: PDB Molecule:mitochondrial association factor 1;
PDBTitle: crystal structure of toxoplasma gondii mitochondrial association2 factor 1 a (maf1a) in complex with adpribose
23c3qfeB_
not modelled 11.4 29
PDB header:lyase
Chain: B: PDB Molecule:putative dihydrodipicolinate synthase family protein;
PDBTitle: crystal structures of a putative dihydrodipicolinate synthase family2 protein from coccidioides immitis
24c2hmcA_
not modelled 11.1 24
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: the crystal structure of dihydrodipicolinate synthase dapa from2 agrobacterium tumefaciens
25d1cvua1
not modelled 11.1 14
Fold:Heme-dependent peroxidases
Superfamily:Heme-dependent peroxidases
Family:Myeloperoxidase-like
26c4uzmA_
not modelled 10.9 33
PDB header:structural protein
Chain: A: PDB Molecule:putative membrane protein igaa homolog;
PDBTitle: shotgun proteolysis: a practical application
27c3fgrA_
not modelled 10.8 36
PDB header:hydrolase
Chain: A: PDB Molecule:putative phospholipase b-like 2 28 kda form;
PDBTitle: two chain form of the 66.3 kda protein at 1.8 angstroem
28c5fwuA_
not modelled 10.6 50
PDB header:signaling protein
Chain: A: PDB Molecule:kremen protein 1;
PDBTitle: wnt modulator kremen crystal form ii at 2.8a
29d1wjva1
not modelled 10.4 20
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:C2HC finger
30c4dppB_
not modelled 10.4 20
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase 2, chloroplastic;
PDBTitle: the structure of dihydrodipicolinate synthase 2 from arabidopsis2 thaliana
31c4cs6A_
not modelled 10.4 20
PDB header:transferase
Chain: A: PDB Molecule:aminoglycoside adenyltransferase;
PDBTitle: crystal structure of aada - an aminoglycoside adenyltransferase
32c2rpsA_
not modelled 10.0 33
PDB header:immune system
Chain: A: PDB Molecule:chemokine;
PDBTitle: solution structure of a novel insect chemokine isolated from2 integument
33c2zxeG_
not modelled 9.9 20
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:phospholemman-like protein;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
34c3dgpB_
not modelled 9.8 36
PDB header:transcription
Chain: B: PDB Molecule:rna polymerase ii transcription factor b subunit 5;
PDBTitle: crystal structure of the complex between tfb5 and the c-terminal2 domain of tfb2
35d2gdza1
not modelled 9.8 15
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
36c3vdoB_
not modelled 9.8 38
PDB header:dna binding protein/protein binding
Chain: B: PDB Molecule:anti-sigma-k factor rska;
PDBTitle: structure of extra-cytoplasmic function(ecf) sigma factor sigk in2 complex with its negative regulator rska from mycobacterium3 tuberculosis
37d1w6ga3
not modelled 9.8 26
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
38c6ckgA_
not modelled 9.5 41
PDB header:transferase
Chain: A: PDB Molecule:d-glycerate 3-kinase;
PDBTitle: d-glycerate 3-kinase from cryptococcus neoformans var. grubii serotype2 a (h99 / atcc 208821 / cbs 10515 / fgsc 9487)
39d1sqwa2
not modelled 9.4 24
Fold:Cystatin-like
Superfamily:Pre-PUA domain
Family:Nip7p homolog, N-terminal domain
40c3b4uB_
not modelled 9.3 20
PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58
41c6bxwA_
not modelled 9.2 58
PDB header:membrane protein
Chain: A: PDB Molecule:mitochondrial association factor 1;
PDBTitle: crystal structure of toxoplasma gondii mitochondrial association2 factor 1 b (maf1b) in complex with adpribose
42d1h9aa2
not modelled 8.7 23
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Glucose 6-phosphate dehydrogenase-like
43d2gvia2
not modelled 8.6 43
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:FwdE C-terminal domain-like
44d1wlfa1
not modelled 8.5 38
Fold:Cdc48 domain 2-like
Superfamily:Cdc48 domain 2-like
Family:Cdc48 domain 2-like
45c1wjvA_
not modelled 8.2 20
PDB header:dna binding protein
Chain: A: PDB Molecule:cell growth regulating nucleolar protein lyar;
PDBTitle: solution structure of the n-terminal zinc finger domain of2 mouse cell growth regulating nucleolar protein lyar
46d1z9ha1
not modelled 8.2 50
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
47c5ui3C_
not modelled 8.1 18
PDB header:lyase
Chain: C: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dhdps from chlamydomonas reinhardtii
48d1w2za2
not modelled 8.1 40
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
49c6et8B_
not modelled 7.9 15
PDB header:protein binding
Chain: B: PDB Molecule:albicidin resistance protein;
PDBTitle: crystal structure of alba in complex with albicidin
50c2gesA_
not modelled 7.9 12
PDB header:transferase
Chain: A: PDB Molecule:pantothenate kinase;
PDBTitle: pantothenate kinase from mycobacterium tuberculosis (mtpank) in2 complex with a coenzyme a derivative, form-i (rt)
51c2e2zA_
not modelled 7.9 25
PDB header:protein transport, chaperone regulator
Chain: A: PDB Molecule:tim15;
PDBTitle: solution nmr structure of yeast tim15, co-chaperone of2 mitochondrial hsp70
52c4lgvA_
not modelled 7.8 42
PDB header:oxidoreductase
Chain: A: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray crystal structure of glucose-6-phosphate 1-dehydrogenase from2 mycobacterium avium
53d1qkia2
not modelled 7.8 42
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Glucose 6-phosphate dehydrogenase-like
54c2bhlB_
not modelled 7.7 42
PDB header:oxidoreductase
Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray structure of human glucose-6-phosphate dehydrogenase (deletion2 variant) complexed with glucose-6-phosphate
55c4ijjA_
not modelled 7.6 19
PDB header:hydrolase
Chain: A: PDB Molecule:putative c4-type zinc finger protein, dksa/trar family;
PDBTitle: structure of transcription factor dksa2 from pseudomonas aeruginosa
56d1ji7a_
not modelled 7.6 40
Fold:SAM domain-like
Superfamily:SAM/Pointed domain
Family:Pointed domain
57c5afdA_
not modelled 7.1 20
PDB header:lyase
Chain: A: PDB Molecule:n-acetylneuraminate lyase;
PDBTitle: native structure of n-acetylneuramininate lyase (sialic acid aldolase)2 from aliivibrio salmonicida
58d1odfa_
not modelled 7.1 23
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Phosphoribulokinase/pantothenate kinase
59c5oeoC_
not modelled 7.1 44
PDB header:membrane protein
Chain: C: PDB Molecule:transient receptor potential cation channel subfamily v
PDBTitle: solution structure of the complex of trpv5(655-725) with a calmodulin2 e32q/e68q double mutant
60c3vpbF_
not modelled 6.9 33
PDB header:ligase
Chain: F: PDB Molecule:alpha-aminoadipate carrier protein lysw;
PDBTitle: argx from sulfolobus tokodaii complexed with2 lysw/glu/adp/mg/zn/sulfate
61c3m8eA_
not modelled 6.9 71
PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: protein structure of type iii plasmid segregation tubr
62c3w1sC_
not modelled 6.8 20
PDB header:ligase
Chain: C: PDB Molecule:ubiquitin-like protein atg12;
PDBTitle: crystal structure of saccharomyces cerevisiae atg12-atg5 conjugate2 bound to the n-terminal domain of atg16
63c3iwcD_
not modelled 6.8 31
PDB header:lyase
Chain: D: PDB Molecule:s-adenosylmethionine decarboxylase;
PDBTitle: t. maritima adometdc complex with s-adenosylmethionine methyl ester
64c1h9aA_
not modelled 6.7 25
PDB header:oxidoreductase (choh(d) - nad(p))
Chain: A: PDB Molecule:glucose 6-phosphate 1-dehydrogenase;
PDBTitle: complex of active mutant (q365->c) of glucose 6-phosphate2 dehydrogenase from l. mesenteroides with coenzyme nadp
65d1d6za2
not modelled 6.6 16
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
66c3eb2A_
not modelled 6.6 45
PDB header:lyase
Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 2.0a resolution
67d1xfia_
not modelled 6.5 21
Fold:AF1104-like
Superfamily:AF1104-like
Family:AF1104-like
68d1xkya1
not modelled 6.5 24
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
69c5fr7B_
not modelled 6.4 36
PDB header:signaling protein
Chain: B: PDB Molecule:amyr;
PDBTitle: erwinia amylovora amyr amylovoran repressor, a member of the ybjn2 protein family
70c1qkiE_
not modelled 6.3 42
PDB header:oxidoreductase
Chain: E: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: x-ray structure of human glucose 6-phosphate dehydrogenase (variant2 canton r459l) complexed with structural nadp+
71c5hy4D_
not modelled 6.3 50
PDB header:hydrolase
Chain: D: PDB Molecule:ring-opening amidohydrolase;
PDBTitle: structure-function analysis of functionally diverse members of the2 cyclic amide hydrolase family of toblerone fold enzymes
72c4e9iB_
not modelled 6.2 33
PDB header:oxidoreductase
Chain: B: PDB Molecule:glucose-6-phosphate 1-dehydrogenase;
PDBTitle: glucose-6-p dehydrogenase (apo form) from trypanosoma cruzi
73c6o58C_
not modelled 6.2 29
PDB header:transport protein
Chain: C: PDB Molecule:calcium uniporter protein, mitochondrial;
PDBTitle: human mcu-emre complex, dimer of channel
74c2eg5C_
not modelled 6.2 23
PDB header:transferase
Chain: C: PDB Molecule:xanthosine methyltransferase;
PDBTitle: the structure of xanthosine methyltransferase
75c2k2dA_
not modelled 6.2 20
PDB header:metal binding protein
Chain: A: PDB Molecule:ring finger and chy zinc finger domain-
PDBTitle: solution nmr structure of c-terminal domain of human pirh2.2 northeast structural genomics consortium (nesg) target ht2c
76c2vt8B_
not modelled 6.1 25
PDB header:hydrolase inhibitor
Chain: B: PDB Molecule:proteasome inhibitor pi31 subunit;
PDBTitle: structure of a conserved dimerisation domain within fbox7 and pi31
77d1uw4a_
not modelled 6.1 36
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Smg-4/UPF3
78c1tjlD_
not modelled 6.1 29
PDB header:transcription
Chain: D: PDB Molecule:dnak suppressor protein;
PDBTitle: crystal structure of transcription factor dksa from e. coli
79d1za0a1
not modelled 6.1 33
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
80c2jo1A_
not modelled 6.0 18
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
81c4uuzC_
not modelled 6.0 24
PDB header:dna binding protein
Chain: C: PDB Molecule:dna replication licensing factor mcm2;
PDBTitle: mcm2-histone complex
82c2kq9A_
not modelled 6.0 24
PDB header:transcription
Chain: A: PDB Molecule:dnak suppressor protein;
PDBTitle: solution structure of dnak suppressor protein from agrobacterium2 tumefaciens c58. northeast structural genomics consortium target3 att12/ontario center for structural proteomics target atc0888
83c2oxlA_
not modelled 6.0 15
PDB header:gene regulation
Chain: A: PDB Molecule:hypothetical protein ymgb;
PDBTitle: structure and function of the e. coli protein ymgb: a protein critical2 for biofilm formation and acid resistance
84c1wlfA_
not modelled 5.9 38
PDB header:protein transport
Chain: A: PDB Molecule:peroxisome biogenesis factor 1;
PDBTitle: structure of the n-terminal domain of pex1 aaa-atpase:2 characterization of a putative adaptor-binding domain
85c2zkrf_
not modelled 5.9 14
PDB header:ribosomal protein/rna
Chain: F: PDB Molecule:rna expansion segment es7 part iii;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
86c3na2C_
not modelled 5.8 47
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein of unknown function from mine drainage2 metagenome leptospirillum rubarum
87d1se7a_
not modelled 5.8 38
Fold:DNA polymerase III theta subunit-like
Superfamily:DNA polymerase III theta subunit-like
Family:DNA polymerase III theta subunit-like
88c2hw2A_
not modelled 5.8 40
PDB header:transferase
Chain: A: PDB Molecule:rifampin adp-ribosyl transferase;
PDBTitle: crystal structure of rifampin adp-ribosyl transferase in complex with2 rifampin
89c5ihfA_
not modelled 5.8 40
PDB header:unknown function
Chain: A: PDB Molecule:virg-like protein;
PDBTitle: salmonella typhimurium virg-like (stv) protein
90c2r94B_
not modelled 5.8 33
PDB header:lyase
Chain: B: PDB Molecule:2-keto-3-deoxy-(6-phospho-)gluconate aldolase;
PDBTitle: crystal structure of kd(p)ga from t.tenax
91d1w6ga2
not modelled 5.7 21
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
92c6grvA_
not modelled 5.6 31
PDB header:metal binding protein
Chain: A: PDB Molecule:metallothionein;
PDBTitle: cadmium(ii) form of full-length metallothionein from pseudomonas2 fluorescens q2-87 (pflq2 mt)
93c5hy0D_
not modelled 5.6 50
PDB header:hydrolase
Chain: D: PDB Molecule:ring-opening amidohydrolase;
PDBTitle: orotic acid hydrolase
94c5mslA_
not modelled 5.6 29
PDB header:transcription
Chain: A: PDB Molecule:anti-sigma-f factor fin;
PDBTitle: solution structure of the b. subtilis anti-sigma-f factor, fin
95c2elvA_
not modelled 5.6 38
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 6th c2h2 zinc finger of human2 zinc finger protein 406
96c5uujA_
not modelled 5.6 27
PDB header:hydrolase
Chain: A: PDB Molecule:alkz;
PDBTitle: streptomyces sahachiroi dna glycosylase alkz
97d2ae9a1
not modelled 5.5 43
Fold:DNA polymerase III theta subunit-like
Superfamily:DNA polymerase III theta subunit-like
Family:DNA polymerase III theta subunit-like
98c2ma5A_
not modelled 5.5 37
PDB header:oxidoreductase
Chain: A: PDB Molecule:lysine-specific demethylase 5b;
PDBTitle: solution nmr structure of phd type zinc finger domain of lysine-2 specific demethylase 5b (plu-1/jarid1b) from homo sapiens, northeast3 structural genomics consortium (nesg) target hr7375c
99c6arhA_
not modelled 5.5 30
PDB header:lyase
Chain: A: PDB Molecule:n-acetylneuraminate lyase;
PDBTitle: crystal structure of human nal at a resolution of 1.6 angstrom

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