Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3430c_(-)_3847822_3848985
DateFri Aug 9 18:20:10 BST 2019
Unique Job ID4734c2d5af61c3c7
SequenceVIDTAIEEMI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:48.433 Y:34.301 Z:46.793
Model (left) based on template c5cz1B_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of the catalytic core domain of mmtv integrase
Confidence and coverage
Confidence:100.0% Coverage: 38%
148 residues ( 38% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
291 residues ( 75%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5cz1B_



100.0 18
PDB header:hydrolase
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of the catalytic core domain of mmtv integrase
2c1c0mA_



100.0 21
PDB header:transferase
Chain: A: PDB Molecule:protein (integrase);
PDBTitle: crystal structure of rsv two-domain integrase
3c3f9kV_



100.0 19
PDB header:viral protein, recombination
Chain: V: PDB Molecule:integrase;
PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd
4d1c0ma2



100.0 22
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
5d1asua_



99.9 20
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
6c5u1cA_



99.9 15
PDB header:viral protein
Chain: A: PDB Molecule:hiv-1 integrase, sso7d chimera;
PDBTitle: structure of tetrameric hiv-1 strand transfer complex intasome
7c3jcaE_



99.9 17
PDB header:viral protein
Chain: E: PDB Molecule:integrase;
PDBTitle: core model of the mouse mammary tumor virus intasome
8c4fcyA_



99.9 11
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposase;
PDBTitle: crystal structure of the bacteriophage mu transpososome
9c1ex4A_



99.9 15
PDB header:viral protein
Chain: A: PDB Molecule:integrase;
PDBTitle: hiv-1 integrase catalytic core and c-terminal domain
10c3nf9A_



99.9 19
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:integrase;
PDBTitle: structural basis for a new mechanism of inhibition of hiv integrase2 identified by fragment screening and structure based design
11d1exqa_



99.9 16
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
12d1bcoa2



99.9 15
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:mu transposase, core domain
13d1cxqa_



99.9 21
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
14c3kksB_



99.9 21
PDB header:dna binding protein
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of catalytic core domain of biv integrase in crystal2 form ii
15c3hpgC_



99.9 19
PDB header:transferase
Chain: C: PDB Molecule:integrase;
PDBTitle: visna virus integrase (residues 1-219) in complex with ledgf2 ibd: examples of open integrase dimer-dimer interfaces
16c5m0rF_



99.9 18
PDB header:hydrolase
Chain: F: PDB Molecule:integrase;
PDBTitle: cryo-em reconstruction of the maedi-visna virus (mvv) strand transfer2 complex
17c4mq3A_



99.9 19
PDB header:viral protein
Chain: A: PDB Molecule:integrase;
PDBTitle: the 1.1 angstrom structure of catalytic core domain of fiv integrase
18c5ejkG_



99.9 16
PDB header:transferase/dna
Chain: G: PDB Molecule:gag-pro-pol polyprotein;
PDBTitle: crystal structure of the rous sarcoma virus intasome
19c1k6yB_



99.9 18
PDB header:transferase
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of a two-domain fragment of hiv-1 integrase
20d1c6va_



99.9 18
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
21c3l2tB_



not modelled 99.9 15
PDB header:recombination/dna
Chain: B: PDB Molecule:integrase;
PDBTitle: crystal structure of the prototype foamy virus (pfv) intasome in2 complex with magnesium and mk0518 (raltegravir)
22d1hyva_



not modelled 99.8 18
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Retroviral integrase, catalytic domain
23c1bcoA_



not modelled 99.8 15
PDB header:transposase
Chain: A: PDB Molecule:bacteriophage mu transposase;
PDBTitle: bacteriophage mu transposase core domain
24c3dlrA_



not modelled 99.8 16
PDB header:transferase
Chain: A: PDB Molecule:integrase;
PDBTitle: crystal structure of the catalytic core domain from pfv integrase
25c3l2uA_



not modelled 99.8 13
PDB header:recombination/dna
Chain: A: PDB Molecule:integrase;
PDBTitle: crystal structure of the prototype foamy virus (pfv)2 intasome in complex with magnesium and gs91373 (elvitegravir)
26c5u1cD_



not modelled 99.7 19
PDB header:viral protein
Chain: D: PDB Molecule:hiv-1 integrase, sso7d chimera;
PDBTitle: structure of tetrameric hiv-1 strand transfer complex intasome
27c3hosA_



not modelled 99.4 15
PDB header:transferase, dna binding protein/dna
Chain: A: PDB Molecule:transposable element mariner, complete cds;
PDBTitle: crystal structure of the mariner mos1 paired end complex with mg
28c5cr4B_



not modelled 97.9 15
PDB header:hydrolase
Chain: B: PDB Molecule:sleeping beauty transposase, sb100x;
PDBTitle: crystal structure of the sleeping beauty transposase catalytic domain
29c6paxA_



not modelled 97.4 12
PDB header:gene regulation/dna
Chain: A: PDB Molecule:homeobox protein pax-6;
PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions
30c1u78A_



not modelled 97.3 13
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:transposable element tc3 transposase;
PDBTitle: structure of the bipartite dna-binding domain of tc32 transposase bound to transposon dna
31c2f7tA_



not modelled 97.2 15
PDB header:dna binding protein
Chain: A: PDB Molecule:mos1 transposase;
PDBTitle: crystal structure of the catalytic domain of mos1 mariner2 transposase
32d1pdnc_



not modelled 97.1 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Paired domain
33c3f2kB_



not modelled 96.9 16
PDB header:transferase
Chain: B: PDB Molecule:histone-lysine n-methyltransferase setmar;
PDBTitle: structure of the transposase domain of human histone-lysine2 n-methyltransferase setmar
34c2k27A_



not modelled 93.5 13
PDB header:transcription regulator
Chain: A: PDB Molecule:paired box protein pax-8;
PDBTitle: solution structure of human pax8 paired box domain
35c4j2nB_



not modelled 92.1 11
PDB header:viral protein
Chain: B: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
36c3hefB_



not modelled 91.7 14
PDB header:viral protein
Chain: B: PDB Molecule:gene 1 protein;
PDBTitle: crystal structure of the bacteriophage sf6 terminase small subunit
37c4j2nA_



not modelled 91.6 12
PDB header:viral protein
Chain: A: PDB Molecule:gp37;
PDBTitle: crystal structure of mycobacteriophage pukovnik xis
38d1rzsa_



not modelled 88.6 15
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:Phage repressors
39d2g3ba1



not modelled 87.1 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
40d2fq4a1



not modelled 87.1 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
41d2jn6a1



not modelled 87.0 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Cgl2762-like
42c1z4hA_



not modelled 86.7 22
PDB header:protein binding, dna binding protein
Chain: A: PDB Molecule:tor inhibition protein;
PDBTitle: the response regulator tori belongs to a new family of2 atypical excisionase
43d2fbqa1



not modelled 86.5 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
44d1vi0a1



not modelled 85.9 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
45c2g7gA_



not modelled 85.8 13
PDB header:transcription
Chain: A: PDB Molecule:rha04620, putative transcriptional regulator;
PDBTitle: the crystal structure of the putative transcriptional regulator2 rha04620 from rhodococcus sp. rha1
46d1umqa_



not modelled 85.8 17
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
47c1umqA_



not modelled 85.8 17
PDB header:dna-binding protein
Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein;
PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity
48c4mk6A_



not modelled 85.1 13
PDB header:transcription regulator
Chain: A: PDB Molecule:probable dihydroxyacetone kinase regulator dhsk_reg;
PDBTitle: crystal structure of probable dihydroxyacetone kinase regulator2 dhsk_reg from listeria monocytogenes egd-e
49d1g2ha_



not modelled 84.8 15
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
50c1g2hA_



not modelled 84.8 15
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein tyrr homolog;
PDBTitle: solution structure of the dna-binding domain of the tyrr2 protein of haemophilus influenzae
51c6fkgC_



not modelled 84.7 15
PDB header:toxin
Chain: C: PDB Molecule:rv1990c (mbca);
PDBTitle: crystal structure of the m.tuberculosis mbct-mbca toxin-antitoxin2 complex.
52c2guhA_



not modelled 84.3 6
PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of the putative tetr-family transcriptional2 regulator from rhodococcus sp. rha1
53c3nxcA_



not modelled 84.1 23
PDB header:dna binding protein
Chain: A: PDB Molecule:hth-type protein slma;
PDBTitle: molecular mechanism by which the escherichia coli nucleoid occlusion2 factor, slma, keeps cytokinesis in check
54d3c07a1



not modelled 84.1 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
55d2iu5a1



not modelled 83.9 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
56d2np5a1



not modelled 83.7 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
57d1t56a1



not modelled 83.6 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
58c3f1bA_



not modelled 83.4 13
PDB header:transcription regulator
Chain: A: PDB Molecule:tetr-like transcriptional regulator;
PDBTitle: the crystal structure of a tetr-like transcriptional regulator from2 rhodococcus sp. rha1.
59d2d6ya1



not modelled 83.2 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
60c3ljlB_



not modelled 83.1 9
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator luxt;
PDBTitle: the crystal structure of the full-length transcriptional regulator2 luxt from vibrio parahaemolyticus rimd 2210633.
61c5vl9D_



not modelled 82.9 19
PDB header:transcription/dna
Chain: D: PDB Molecule:regulatory protein tetr;
PDBTitle: crystal structure of eilr in complex with eilo dna element
62d1jt6a1



not modelled 82.8 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
63c5nbcD_



not modelled 82.7 22
PDB header:dna binding protein
Chain: D: PDB Molecule:ferric uptake regulation protein;
PDBTitle: structure of prokaryotic transcription factors
64d2coba1



not modelled 82.7 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Psq domain
65d2vkea1



not modelled 82.4 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
66d1pb6a1



not modelled 82.3 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
67d2fx0a1



not modelled 82.1 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
68c3fiwB_



not modelled 82.0 19
PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structure of sco0253, a tetr-family transcriptional regulator from2 streptomyces coelicolor
69d1rkta1



not modelled 82.0 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
70c3gziA_



not modelled 81.8 22
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a transcriptional regulator of the tetr family2 (shew_3567) from shewanella loihica pv-4 at 2.05 a resolution
71c4ac6A_



not modelled 81.6 19
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional repressor acnr;
PDBTitle: corynebacterium glutamicum acnr au derivative structure
72d1etxa_



not modelled 81.6 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
73c2iu5A_



not modelled 81.6 13
PDB header:transcription
Chain: A: PDB Molecule:hth-type dhaklm operon transcriptional activator dhas;
PDBTitle: dihydroxyacetone kinase operon activator dhas
74d2hyja1



not modelled 81.0 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
75c2nx4A_



not modelled 81.0 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:transcriptional regulator, tetr family protein;
PDBTitle: the crystal structure of athe putative tetr-family transcriptional2 regulator rha06780 from rhodococcus sp. rha1.
76d2i10a1



not modelled 81.0 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
77c1hlvA_



not modelled 80.9 7
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:major centromere autoantigen b;
PDBTitle: crystal structure of cenp-b(1-129) complexed with the cenp-2 b box dna
78c2w57A_



not modelled 80.8 27
PDB header:metal transport
Chain: A: PDB Molecule:ferric uptake regulation protein;
PDBTitle: crystal structure of the vibrio cholerae ferric uptake2 regulator (fur) reveals structural rearrangement of the3 dna-binding domains
79c3vibD_



not modelled 80.7 16
PDB header:dna binding protein
Chain: D: PDB Molecule:mtrr;
PDBTitle: structural basis for multidrug recognition and antimicrobial2 resistance by mtrr, an efflux pump regulator from neisseria3 gonorrhoeae
80c3b81A_



not modelled 80.7 13
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, acrr family;
PDBTitle: crystal structure of predicted dna-binding transcriptional regulator2 of tetr/acrr family (np_350189.1) from clostridium acetobutylicum at3 2.10 a resolution
81c3cwrA_



not modelled 80.7 13
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of transcriptional regulator of tetr family2 (yp_425770.1) from rhodospirillum rubrum atcc 11170 at 1.50 a3 resolution
82c6azhA_



not modelled 80.6 13
PDB header:transcription
Chain: A: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: clostridium perfringens putative fatty acid metabolism regulator
83d2id3a1



not modelled 80.6 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
84c5dajB_



not modelled 80.5 13
PDB header:transcription regulator
Chain: B: PDB Molecule:nald;
PDBTitle: crystal structure of nald, the secondary repressor of mexab-oprm2 multidrug efflux pump in pseudomonas aeruginosa
85c1vi0B_



not modelled 80.4 16
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator
86d2fd5a1



not modelled 80.3 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
87d2id6a1



not modelled 80.3 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
88c3ppbB_



not modelled 80.1 6
PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr family transcription regulator;
PDBTitle: crystal structure of a putative tetr family transcription regulator2 (shew_3104) from shewanella sp. pv-4 at 2.10 a resolution
89c3pasA_



not modelled 79.9 19
PDB header:transcription regulator
Chain: A: PDB Molecule:tetr family transcription regulator;
PDBTitle: crystal structure of a tetr family transcription regulator (maqu_1417)2 from marinobacter aquaeolei vt8 at 1.90 a resolution
90c3dcfB_



not modelled 79.9 10
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator of the tetr/acrr family;
PDBTitle: crystal structure of transcriptional regulator of the tetr/acrr family2 (yp_290855.1) from thermobifida fusca yx-er1 at 2.50 a resolution
91c4l5eA_



not modelled 79.9 13
PDB header:protein binding
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of a. aeolicus ntrc1 dna binding domain
92c2jk3A_



not modelled 79.8 6
PDB header:transcription
Chain: A: PDB Molecule:hemolysin ii regulatory protein;
PDBTitle: crystal structure of the hlyiir mutant protein with2 residues 169-186 substituted by gssgssg linker
93c3cjdB_



not modelled 79.6 13
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of putative tetr transcriptional regulator2 (yp_510936.1) from jannaschia sp. ccs1 at 1.79 a resolution
94c2of7A_



not modelled 79.5 10
PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a tetr-family2 transcriptional regulator from streptomyces coelicolor a3
95c4za6A_



not modelled 79.4 25
PDB header:signaling protein
Chain: A: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: structure of the r. erythropolis transcriptional repressor qsdr from2 tetr family
96d2o7ta1



not modelled 79.4 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
97c3g56A_



not modelled 79.3 6
PDB header:dna binding protein
Chain: A: PDB Molecule:regulator of macrolide 2'-phosphotransferase i;
PDBTitle: structure of the macrolide biosensor protein, mphr(a)
98c3anpD_



not modelled 79.3 3
PDB header:transcription
Chain: D: PDB Molecule:transcriptional repressor, tetr family;
PDBTitle: crystal structure of thermus thermophilus fadr, a tetr familly2 transcriptional repressor, in complex with lauroyl-coa.
99c3ni7A_



not modelled 79.3 6
PDB header:transcription regulator
Chain: A: PDB Molecule:bacterial regulatory proteins, tetr family;
PDBTitle: crystal structure of the tetr transcriptional regulator from2 nitrosomonas europaea atcc 19718
100d1ntca_



not modelled 79.2 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
101c3kkcB_



not modelled 79.2 16
PDB header:transcription regulator
Chain: B: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: the crystal structure of tetr transcriptional regulator from2 streptococcus agalactiae 2603v
102c5k7fA_



not modelled 79.2 13
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of apo aibr
103c2ibdB_



not modelled 79.2 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:possible transcriptional regulator;
PDBTitle: crystal structure of probable transcriptional regulatory protein2 rha5900
104c3c2bA_



not modelled 79.1 13
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of tetr transcriptional regulator from agrobacterium2 tumefaciens
105d1v7ba1



not modelled 79.1 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
106d2vkva1



not modelled 79.0 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
107c2dg7A_



not modelled 79.0 19
PDB header:gene regulation
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of the putative transcriptional regulator sco03372 from streptomyces coelicolor a3(2)
108c3e7qB_



not modelled 78.9 16
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: the crystal structure of the putative transcriptional regulator from2 pseudomonas aeruginosa pao1
109c3voxD_



not modelled 78.8 19
PDB header:transcription
Chain: D: PDB Molecule:transcriptional regulator;
PDBTitle: x-ray crystal structure of wild type hrtr in the apo form
110d1fipa_



not modelled 78.8 13
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:FIS-like
111c2f07A_



not modelled 78.7 16
PDB header:transcription
Chain: A: PDB Molecule:yvdt;
PDBTitle: crystal structure of yvdt from bacillus subtilis
112d2gfna1



not modelled 78.6 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
113c5xazD_



not modelled 78.5 10
PDB header:dna binding protein
Chain: D: PDB Molecule:gamma-butyrolactone receptor protein;
PDBTitle: crystal structure of full length native tylp, a tetr regulator from2 streptomyces fradiae
114c3vprA_



not modelled 78.5 19
PDB header:dna binding protein
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a tetr family transcriptional regulator pfmr from2 thermus thermophilus hb8
115d1z0xa1



not modelled 78.4 19
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Tetracyclin repressor-like, N-terminal domain
116c3zqiB_



not modelled 78.3 25
PDB header:transcription
Chain: B: PDB Molecule:tetracycline repressor protein class b from transposon
PDBTitle: structure of tetracycline repressor in complex with inducer peptide-2 tip2
117c3f0cA_



not modelled 78.2 19
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of transcriptional regulator from cytophaga2 hutchinsonii atcc 33406
118c4r4eA_



not modelled 78.1 15
PDB header:transcription regulator/dna
Chain: A: PDB Molecule:hth-type transcriptional regulator glnr;
PDBTitle: structure of glnr-dna complex
119c1jumB_



not modelled 78.0 6
PDB header:transcription
Chain: B: PDB Molecule:hypothetical transcriptional regulator in qaca 5'region;
PDBTitle: crystal structure of the multidrug binding transcriptional repressor2 qacr bound to the natural drug berberine
120c2eh3A_



not modelled 77.9 10
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of aq_1058, a transcriptional regulator (terr/acrr2 family) from aquifex aeolicus vf5

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite