Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3435c_(-)_3854119_3854973
DateFri Aug 9 18:20:10 BST 2019
Unique Job ID826de3ab3d337452
SequenceLGRILRVVVG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:41.555 Y:113.282 Z:55.237
Model (left) based on template c3riaC_
Top template information
PDB header:transport protein/immune system
Chain: C: PDB Molecule:avermectin-sensitive glutamate-gated chloride channel glucl
PDBTitle: c. elegans glutamate-gated chloride channel (glucl) in complex with2 fab, ivermectin and iodide.
Confidence and coverage
Confidence: 97.1% Coverage: 86%
244 residues ( 86% of your sequence) have been modelled with 97.1% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3riaC_
97.1 15
PDB header:transport protein/immune system
Chain: C: PDB Molecule:avermectin-sensitive glutamate-gated chloride channel glucl
PDBTitle: c. elegans glutamate-gated chloride channel (glucl) in complex with2 fab, ivermectin and iodide.
2c4pirD_
96.9 21
PDB header:transport protein
Chain: D: PDB Molecule:5-hydroxytryptamine receptor 3a;
PDBTitle: x-ray structure of the mouse serotonin 5-ht3 receptor
3c3jadC_
96.8 13
PDB header:signaling protein/antagonist
Chain: C: PDB Molecule:glycine receptor subunit alphaz1;
PDBTitle: structure of alpha-1 glycine receptor by single particle electron2 cryo-microscopy, strychnine-bound state
4c3eamB_
96.6 15
PDB header:membrane protein, transport protein
Chain: B: PDB Molecule:glr4197 protein;
PDBTitle: an open-pore structure of a bacterial pentameric ligand-2 gated ion channel
5c6d6uB_
96.4 13
PDB header:transport protein
Chain: B: PDB Molecule:gamma-aminobutyric acid receptor subunit alpha-1,gamma-
PDBTitle: human gaba-a receptor alpha1-beta2-gamma2 subtype in complex with gaba2 and flumazenil, conformation a
6c4cofC_
96.3 17
PDB header:transport protein
Chain: C: PDB Molecule:gamma-aminobutyric acid receptor subunit beta-3;
PDBTitle: crystal structure of a human gamma-aminobutyric acid receptor, the2 gaba(a)r-beta3 homopentamer
7c4aq5C_
96.2 14
PDB header:membrane protein
Chain: C: PDB Molecule:acetylcholine receptor delta subunit;
PDBTitle: gating movement in acetylcholine receptor analysed by time-resolved2 electron cryo-microscopy (closed class)
8c2vl0A_
95.7 13
PDB header:membrane protein
Chain: A: PDB Molecule:elic pentameric ligand gated ion channel from
PDBTitle: x-ray structure of a pentameric ligand gated ion channel2 from erwinia chrysanthemi (elic)
9c2bg9C_
95.6 13
PDB header:ion channel/receptor
Chain: C: PDB Molecule:acetylcholine receptor protein, delta chain;
PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution.
10c5kxiA_
95.6 15
PDB header:transport protein
Chain: A: PDB Molecule:neuronal acetylcholine receptor subunit alpha-4;
PDBTitle: x-ray structure of the human alpha4beta2 nicotinic receptor
11c4aq5B_
95.4 12
PDB header:membrane protein
Chain: B: PDB Molecule:acetylcholine receptor beta subunit;
PDBTitle: gating movement in acetylcholine receptor analysed by time-resolved2 electron cryo-microscopy (closed class)
12c6fvqE_
94.9 11
PDB header:membrane protein
Chain: E: PDB Molecule:cys-loop ligand-gated ion channel;
PDBTitle: the active form of a pentameric ion channel (stelic) gated by alkaline2 ph - r86a
13c5kxiC_
94.5 14
PDB header:transport protein
Chain: C: PDB Molecule:neuronal acetylcholine receptor subunit beta-2;
PDBTitle: x-ray structure of the human alpha4beta2 nicotinic receptor
14c6hinA_
94.4 16
PDB header:membrane protein
Chain: A: PDB Molecule:5-hydroxytryptamine receptor 3a;
PDBTitle: mouse serotonin 5-ht3 receptor, serotonin-bound, f conformation
15c4aq9E_
94.3 16
PDB header:membrane protein
Chain: E: PDB Molecule:acetylcholine receptor gamma subunit;
PDBTitle: gating movement in acetylcholine receptor analysed by time- resolved2 electron cryo-microscopy (open class)
16c2bg9E_
94.3 16
PDB header:ion channel/receptor
Chain: E: PDB Molecule:acetylcholine receptor protein, gamma chain;
PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution.
17c2bg9B_
92.8 11
PDB header:ion channel/receptor
Chain: B: PDB Molecule:acetylcholine receptor protein, beta chain;
PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution.
18c2bg9A_
86.9 13
PDB header:ion channel/receptor
Chain: A: PDB Molecule:acetylcholine receptor protein, alpha chain;
PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution.
19c4aq5A_
83.7 14
PDB header:membrane protein
Chain: A: PDB Molecule:acetylcholine receptor subunit alpha;
PDBTitle: gating movement in acetylcholine receptor analysed by time-resolved2 electron cryo-microscopy (closed class)
20c5jxpA_
74.8 25
PDB header:hydrolase
Chain: A: PDB Molecule:asp/glu-specific dipeptidyl-peptidase;
PDBTitle: crystal structure of porphyromonas endodontalis dpp11 in alternate2 conformation
21c6d6tE_
not modelled 66.8 16
PDB header:transport protein
Chain: E: PDB Molecule:human gaba-a receptor subunit gamma-2;
PDBTitle: human gaba-a receptor alpha1-beta2-gamma2 subtype in complex with gaba2 and flumazenil, conformation b
22c3wolB_
not modelled 64.5 25
PDB header:hydrolase
Chain: B: PDB Molecule:dipeptidyl aminopeptidase bii;
PDBTitle: crystal structure of the dap bii dipeptide complex i
23c5jxfA_
not modelled 63.3 22
PDB header:hydrolase
Chain: A: PDB Molecule:asp/glu-specific dipeptidyl-peptidase;
PDBTitle: crystal structure of flavobacterium psychrophilum dpp11 in complex2 with dipeptide arg-asp
24c4y01B_
not modelled 54.9 22
PDB header:hydrolase
Chain: B: PDB Molecule:peptidase s46;
PDBTitle: crystal structure of dipeptidyl peptidase 11 (dpp11) from2 porphyromonas gingivalis
25c2m59A_
not modelled 38.7 10
PDB header:transferase
Chain: A: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
26c2m59B_
not modelled 38.7 10
PDB header:transferase
Chain: B: PDB Molecule:vascular endothelial growth factor receptor 2;
PDBTitle: spatial structure of dimeric vegfr2 membrane domain in dpc micelles
27c6d6uE_
not modelled 30.0 14
PDB header:transport protein
Chain: E: PDB Molecule:gamma-aminobutyric acid receptor subunit gamma-2,gamma-
PDBTitle: human gaba-a receptor alpha1-beta2-gamma2 subtype in complex with gaba2 and flumazenil, conformation a
28c2voyB_
not modelled 29.4 24
PDB header:hydrolase
Chain: B: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium atpase 1;
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
29c5egiB_
not modelled 26.6 21
PDB header:membrane protein
Chain: B: PDB Molecule:uncharacterized protein y57a10a.10;
PDBTitle: structure of a trimeric intracellular cation channel from c. elegans2 with bound ca2+
30c6iz4G_
not modelled 23.7 33
PDB header:membrane protein
Chain: G: PDB Molecule:trimeric intracellular cation channel type b-b;
PDBTitle: crystal structure analysis of tric counter-ion channels in calcium2 release
31c3r0rA_
not modelled 22.9 28
PDB header:virus
Chain: A: PDB Molecule:porcine circovirus 2 (pcv2) capsid protein;
PDBTitle: the 2.3 a structure of porcine circovirus 2
32c6iz0A_
not modelled 19.0 28
PDB header:membrane protein
Chain: A: PDB Molecule:trimeric intracellular cation channel type a;
PDBTitle: crystal structure analysis of a eukaryotic membrane protein
33c6hu9s_
not modelled 18.4 50
PDB header:oxidoreductase/electron transport
Chain: S: PDB Molecule:cytochrome b-c1 complex subunit 8;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
34c2na6C_
not modelled 17.5 17
PDB header:apoptosis
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
35c2na6A_
not modelled 17.5 17
PDB header:apoptosis
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
36c2na6B_
not modelled 17.5 17
PDB header:apoptosis
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 6;
PDBTitle: transmembrane domain of mouse fas/cd95 death receptor
37c5jkqB_
not modelled 17.4 57
PDB header:solute binding protein
Chain: B: PDB Molecule:pfvft1;
PDBTitle: crystal structure of plasmodium falciparum pf3d7_0606800 (pfvft1)
38c5mhjA_
not modelled 17.0 25
PDB header:transcription
Chain: A: PDB Molecule:major viral transcription factor icp4;
PDBTitle: icp4 dna-binding domain, lacking intrinsically disordered region, in2 complex with 12mer dna duplex from its own promoter
39c6hu9e_
not modelled 17.0 18
PDB header:oxidoreductase/electron transport
Chain: E: PDB Molecule:cytochrome b-c1 complex subunit rieske, mitochondrial;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
40c5j09F_
not modelled 16.8 20
PDB header:virus
Chain: F: PDB Molecule:beak and feather disease virus capsid protein;
PDBTitle: crystal structure of decameric bfdv capsid protein
41c6hu9g_
not modelled 16.8 50
PDB header:oxidoreductase/electron transport
Chain: G: PDB Molecule:cytochrome b-c1 complex subunit 7;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
42c5eikA_
not modelled 13.0 17
PDB header:membrane protein
Chain: A: PDB Molecule:uncharacterized protein y57a10a.28;
PDBTitle: structure of a trimeric intracellular cation channel from c. elegans2 in the absence of ca2+
43c4gucA_
not modelled 10.2 22
PDB header:unknown function
Chain: A: PDB Molecule:protein ba_2500;
PDBTitle: 1.4 angstrom resolution crystal structure of uncharacterized protein2 ba_2500 from bacillus anthracis str. ames
44d2hyma1
not modelled 9.0 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Fibronectin type III
Family:Fibronectin type III
45c1q90L_
not modelled 8.8 23
PDB header:photosynthesis
Chain: L: PDB Molecule:cytochrome b6f complex subunit petl;
PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii
46d1q90l_
not modelled 8.8 23
Fold:Single transmembrane helix
Superfamily:PetL subunit of the cytochrome b6f complex
Family:PetL subunit of the cytochrome b6f complex
47d1x4ka2
not modelled 8.8 13
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
48c1wcuA_
not modelled 8.1 12
PDB header:carbohydrate binding
Chain: A: PDB Molecule:non-catalytic protein 1;
PDBTitle: cbm29_1, a family 29 carbohydrate binding module from2 piromyces equi
49d1gwma_
not modelled 7.6 13
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 29 carbohydrate binding module, CBM29
50c3g43F_
not modelled 7.4 43
PDB header:metal binding protein
Chain: F: PDB Molecule:voltage-dependent l-type calcium channel subunit alpha-1c;
PDBTitle: crystal structure of the calmodulin-bound cav1.2 c-terminal regulatory2 domain dimer
51c3j1rR_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: R: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
52c3j1rG_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: G: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
53c3j1rI_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: I: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
54c3j1rT_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: T: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
55c3j1rJ_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: J: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
56c3j1rQ_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: Q: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
57c3j1rO_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: O: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
58c3j1rS_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: S: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
59c3j1rN_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: N: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
60c3j1rK_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: K: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
61c3j1rH_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: H: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
62c3j1rM_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: M: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
63c3j1rE_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: E: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
64c3j1rC_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: C: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
65c3j1rF_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: F: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
66c3j1rD_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: D: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
67c3j1rP_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: P: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
68c3j1rL_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: L: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
69c3j1rB_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: B: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
70c3j1rU_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: U: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
71c3j1rA_
not modelled 7.2 29
PDB header:cell adhesion, structural protein
Chain: A: PDB Molecule:archaeal adhesion filament core;
PDBTitle: filaments from ignicoccus hospitalis show diversity of packing in2 proteins containing n-terminal type iv pilin helices
72c2qc1B_
not modelled 7.2 13
PDB header:protein binding
Chain: B: PDB Molecule:acetylcholine receptor subunit alpha;
PDBTitle: crystal structure of the extracellular domain of the nicotinic2 acetylcholine receptor 1 subunit bound to alpha-bungarotoxin at 1.9 a3 resolution
73c5xyhA_
not modelled 7.1 58
PDB header:hydrolase
Chain: A: PDB Molecule:cbsa;
PDBTitle: crystal structure of catalytic domain of 1,4-beta-cellobiosidase2 (cbsa) from xanthomonas oryzae pv. oryzae
74c4m1lB_
not modelled 6.8 33
PDB header:metal binding protein
Chain: B: PDB Molecule:iq domain-containing protein g;
PDBTitle: complex of iqcg and ca2+-bound cam
75d1vq3a_
not modelled 6.6 11
Fold:PurS-like
Superfamily:PurS-like
Family:PurS subunit of FGAM synthetase
76c5kyhS_
not modelled 6.5 19
PDB header:cell adhesion
Chain: S: PDB Molecule:iho670;
PDBTitle: structure of iho670 flagellar-like filament
77c4m5bA_
not modelled 6.3 18
PDB header:membrane protein
Chain: A: PDB Molecule:cobalamin biosynthesis protein cbim;
PDBTitle: crystal structure of an truncated transition metal transporter
78c4m5cA_
not modelled 6.3 18
PDB header:membrane protein
Chain: A: PDB Molecule:cobalamin biosynthesis protein cbim;
PDBTitle: crystal structure of an truncated transition metal transporter
79d1ttza_
not modelled 6.3 39
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
80d1hc1a3
not modelled 5.7 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Arthropod hemocyanin, C-terminal domain
81c2voyG_
not modelled 5.6 11
PDB header:hydrolase
Chain: G: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium atpase 1;
PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus
82c4jx0A_
not modelled 5.5 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a two domain protein with unknown function2 (bf3416) from bacteroides fragilis nctc 9343 at 2.90 a resolution
83c3n91A_
not modelled 5.4 16
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a structural genomics, unknown function2 (bacova_03430) from bacteroides ovatus at 2.40 a resolution
84c5nbbA_
not modelled 5.4 31
PDB header:chaperone
Chain: A: PDB Molecule:rna chaperone proq;
PDBTitle: structure of the c-terminal domain of the escherichia coli proq rna2 binding protein
85c6c14A_
not modelled 5.1 11
PDB header:membrane protein, metal transport
Chain: A: PDB Molecule:protocadherin-15;
PDBTitle: cryoem structure of mouse pcdh15-1ec-lhfpl5 complex

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below