Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3439c_(-)_3858439_3859842
DateFri Aug 9 18:20:11 BST 2019
Unique Job ID9fcee1a88586dd88
SequenceVADRLNVAER ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:27.204 Y:56.690 Z:25.404
Model (left) based on template d1wa8a1
Top template information
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
Confidence and coverage
Confidence: 94.6% Coverage: 16%
73 residues ( 16% of your sequence) have been modelled with 94.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 56% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1wa8a1
94.6 19
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
2c4lwsA_
94.3 16
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
3d1wa8b1
94.3 18
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
4c4lwsB_
94.2 14
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
5c2vs0B_
93.0 14
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
6c4iogD_
91.9 9
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
7c3zbhC_
91.3 15
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
8c3gvmA_
91.2 17
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
9c2kg7B_
88.8 15
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
10d2g38b1
74.1 10
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PPE
11c2g38B_
74.1 10
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ppe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
12c2i56A_
70.3 20
PDB header:isomerase, metal-binding protein
Chain: A: PDB Molecule:l-rhamnose isomerase;
PDBTitle: crystal structure of l-rhamnose isomerase from pseudomonas2 stutzeri with l-rhamnose
13c5hypB_
61.3 24
PDB header:immune system
Chain: B: PDB Molecule:m28 protein;
PDBTitle: structure of human c4b-binding protein alpha cain ccp domains 1 and 22 in complex with the hypervariable region of group a streptococcus m283 protein
14c6ogdB_
60.9 12
PDB header:toxin
Chain: B: PDB Molecule:toxin subunit yena2;
PDBTitle: cryo-em structure of yentca in its prepore state
15c3d3kD_
56.6 13
PDB header:protein binding
Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: crystal structure of human edc3p
16c4i0xJ_
54.9 17
PDB header:structural genomics, unknown function
Chain: J: PDB Molecule:esat-6-like protein mab_3113;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
17d1izca_
53.5 16
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
18c1izcA_
53.5 16
PDB header:lyase
Chain: A: PDB Molecule:macrophomate synthase intermolecular diels-alderase;
PDBTitle: crystal structure analysis of macrophomate synthase
19d1qh8b_
49.6 21
Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
20d1nt2b_
48.2 28
Fold:Nop domain
Superfamily:Nop domain
Family:Nop domain
21c4ffcD_
not modelled 41.7 23
PDB header:transferase
Chain: D: PDB Molecule:4-aminobutyrate aminotransferase (gabt);
PDBTitle: crystal structure of a 4-aminobutyrate aminotransferase (gabt) from2 mycobacterium abscessus
22c4i0xA_
not modelled 40.3 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein mab_3112;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
23c2ykyB_
not modelled 37.0 23
PDB header:transferase
Chain: B: PDB Molecule:beta-transaminase;
PDBTitle: structural determinants of the beta-selectivity of a bacterial2 aminotransferase
24c3e04C_
not modelled 36.4 20
PDB header:lyase
Chain: C: PDB Molecule:fumarate hydratase;
PDBTitle: crystal structure of human fumarate hydratase
25c5ghfB_
not modelled 35.9 19
PDB header:transferase
Chain: B: PDB Molecule:aminotransferase class-iii;
PDBTitle: transaminase with l-ala
26d1dxea_
not modelled 35.8 18
Fold:TIM beta/alpha-barrel
Superfamily:Phosphoenolpyruvate/pyruvate domain
Family:HpcH/HpaI aldolase
27c3m1eA_
not modelled 35.0 14
PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator benm;
PDBTitle: crystal structure of benm_dbd
28c2uvaI_
not modelled 34.8 21
PDB header:transferase
Chain: I: PDB Molecule:fatty acid synthase beta subunits;
PDBTitle: crystal structure of fatty acid synthase from thermomyces2 lanuginosus at 3.1 angstrom resolution. this file contains3 the beta subunits of the fatty acid synthase. the entire4 crystal structure consists of one heterododecameric fatty5 acid synthase and is described in remark 400
29c4gioA_
not modelled 33.8 42
PDB header:unknown function
Chain: A: PDB Molecule:putative lipoprotein;
PDBTitle: crystal structure of campylobacter jejuni cj0090
30c3w3fB_
not modelled 33.6 17
PDB header:biosynthetic protein
Chain: B: PDB Molecule:uncharacterized protein blr2150;
PDBTitle: crystal structure of ent-kaurene synthase bjks from bradyrhizobium2 japonicum
31c3id6A_
not modelled 33.5 9
PDB header:transferase
Chain: A: PDB Molecule:pre mrna splicing protein;
PDBTitle: crystal structure of sulfolobus solfataricus nop5 (1-262) and2 fibrillarin complex
32c6akmA_
not modelled 33.2 19
PDB header:protein binding
Chain: A: PDB Molecule:suppressor of ikbke 1;
PDBTitle: crystal structure of slmap-sike1 complex
33d1xm5a_
not modelled 32.7 39
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Predicted metal-dependent hydrolase
34c2yy0D_
not modelled 30.1 16
PDB header:transcription
Chain: D: PDB Molecule:c-myc-binding protein;
PDBTitle: crystal structure of ms0802, c-myc-1 binding protein domain2 from homo sapiens
35d1qm4a2
not modelled 29.6 19
Fold:S-adenosylmethionine synthetase
Superfamily:S-adenosylmethionine synthetase
Family:S-adenosylmethionine synthetase
36c3n8uB_
not modelled 29.0 16
PDB header:hydrolase
Chain: B: PDB Molecule:imelysin peptidase;
PDBTitle: crystal structure of an imelysin peptidase (bacova_03801) from2 bacteroides ovatus at 1.44 a resolution
37c3oksB_
not modelled 28.1 15
PDB header:transferase
Chain: B: PDB Molecule:4-aminobutyrate transaminase;
PDBTitle: crystal structure of 4-aminobutyrate transaminase from mycobacterium2 smegmatis
38d1sffa_
not modelled 27.6 19
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
39d2d0ta1
not modelled 27.1 13
Fold:Indolic compounds 2,3-dioxygenase-like
Superfamily:Indolic compounds 2,3-dioxygenase-like
Family:Indoleamine 2,3-dioxygenase-like
40c3n5mD_
not modelled 26.7 16
PDB header:transferase
Chain: D: PDB Molecule:adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
PDBTitle: crystals structure of a bacillus anthracis aminotransferase
41c2n39A_
not modelled 26.0 17
PDB header:dna binding protein
Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 1;
PDBTitle: nmr solution structure of a c-terminal domain of the chromodomain2 helicase dna-binding protein 1
42d2fr2a1
not modelled 25.4 33
Fold:Lipocalins
Superfamily:Lipocalins
Family:Rv2717c-like
43d1zoda1
not modelled 25.3 16
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
44c1wqsA_
not modelled 25.0 55
PDB header:hydrolase
Chain: A: PDB Molecule:3c-like protease;
PDBTitle: crystal structure of norovirus 3c-like protease
45d1c3ca_
not modelled 24.7 12
Fold:L-aspartase-like
Superfamily:L-aspartase-like
Family:L-aspartase/fumarase
46c3hhgF_
not modelled 24.6 16
PDB header:transcription regulator
Chain: F: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: structure of crga, a lysr-type transcriptional regulator from2 neisseria meningitidis.
47c5fo5A_
not modelled 24.1 11
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator metr;
PDBTitle: structure of the dna-binding domain of escherichia coli methionine2 biosynthesis regulator metr
48d1ob0a2
not modelled 24.0 36
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
49d1tvia_
not modelled 22.5 29
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Predicted metal-dependent hydrolase
50d1u94a2
not modelled 22.4 25
Fold:Anti-LPS factor/recA domain
Superfamily:RecA protein, C-terminal domain
Family:RecA protein, C-terminal domain
51c3o0lB_
not modelled 21.8 25
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution
52c4arpB_
not modelled 21.5 16
PDB header:hydrolase
Chain: B: PDB Molecule:pesticin;
PDBTitle: structure of the inactive pesticin e178a mutant
53d1xp8a2
not modelled 21.1 21
Fold:Anti-LPS factor/recA domain
Superfamily:RecA protein, C-terminal domain
Family:RecA protein, C-terminal domain
54c2v5jB_
not modelled 21.0 18
PDB header:lyase
Chain: B: PDB Molecule:2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase;
PDBTitle: apo class ii aldolase hpch
55d2al6a3
not modelled 20.5 15
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:First domain of FERM
56d1e43a2
not modelled 20.5 28
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
57c3id5E_
not modelled 20.4 10
PDB header:transferase/ribosomal protein/rna
Chain: E: PDB Molecule:pre mrna splicing protein;
PDBTitle: crystal structure of sulfolobus solfataricus c/d rnp assembled with2 nop5, fibrillarin, l7ae and a split half c/d rna
58c1bplA_
not modelled 20.3 32
PDB header:glycosyltransferase
Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase;
PDBTitle: glycosyltransferase
59c4gq6A_
not modelled 20.2 33
PDB header:transcription/transcription inhibitor
Chain: A: PDB Molecule:menin;
PDBTitle: human menin in complex with mll peptide
60c2fwvA_
not modelled 20.1 33
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein mtubf_01000852;
PDBTitle: crystal structure of rv0813
61c2jq3A_
not modelled 19.9 27
PDB header:lipid binding protein
Chain: A: PDB Molecule:apolipoprotein c-iii;
PDBTitle: structure and dynamics of human apolipoprotein c-iii
62c2nnwC_
not modelled 19.7 14
PDB header:transferase
Chain: C: PDB Molecule:nop5/nop56 related protein;
PDBTitle: alternative conformations of nop56/58-fibrillarin complex and2 implication for induced-fit assenly of box c/d rnps
63d1jm6a1
not modelled 19.5 23
Fold:Bromodomain-like
Superfamily:alpha-ketoacid dehydrogenase kinase, N-terminal domain
Family:alpha-ketoacid dehydrogenase kinase, N-terminal domain
64c3re2A_
not modelled 19.5 33
PDB header:unknown function
Chain: A: PDB Molecule:predicted protein;
PDBTitle: crystal structure of menin reveals the binding site for mixed lineage2 leukemia (mll) protein
65d2c0sa1
not modelled 19.4 23
Fold:ROP-like
Superfamily:BAS1536-like
Family:BAS1536-like
66c4mf4F_
not modelled 19.2 20
PDB header:lyase
Chain: F: PDB Molecule:hpch/hpai aldolase/citrate lyase family protein;
PDBTitle: crystal structure of a hpch/hpal aldolase/citrate lyase family protein2 from burkholderia cenocepacia j2315
67c1odpA_
not modelled 19.1 44
PDB header:lipid transport
Chain: A: PDB Molecule:apoa-i peptide;
PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 6.6, 37 degrees celsius and peptide:sds mole ratio3 of 1:40
68c1odrA_
not modelled 19.1 44
PDB header:lipid transport
Chain: A: PDB Molecule:apoa-i peptide;
PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 6.0, 37 degrees celsius and peptide:dpc mole ratio3 of 1:40
69c1odqA_
not modelled 19.1 44
PDB header:lipid transport
Chain: A: PDB Molecule:apoa-i peptide;
PDBTitle: peptide of human apoa-i residues 166-185. nmr, 5 structures2 at ph 3.7, 37 degrees celsius and peptide:sds mole ratio3 of 1:40
70c5i92E_
not modelled 19.0 21
PDB header:isomerase
Chain: E: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase;
PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1- aminomutase (gsa)2 from pseudomonas aeruginosa
71d2a13a1
not modelled 19.0 33
Fold:Lipocalins
Superfamily:Lipocalins
Family:Rv2717c-like
72c3u88B_
not modelled 18.9 33
PDB header:transcription
Chain: B: PDB Molecule:menin;
PDBTitle: crystal structure of human menin in complex with mll1 and ledgf
73c4wwxB_
not modelled 18.7 22
PDB header:hydrolase, ligase
Chain: B: PDB Molecule:v(d)j recombination-activating protein 1;
PDBTitle: crystal structure of the core rag1/2 recombinase
74d1gkza1
not modelled 18.5 23
Fold:Bromodomain-like
Superfamily:alpha-ketoacid dehydrogenase kinase, N-terminal domain
Family:alpha-ketoacid dehydrogenase kinase, N-terminal domain
75c6nd4a_
not modelled 18.5 23
PDB header:ribosome
Chain: A: PDB Molecule:mpp10;
PDBTitle: conformational switches control early maturation of the eukaryotic2 small ribosomal subunit
76d2gjpa2
not modelled 18.4 29
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
77d1ubea2
not modelled 17.9 19
Fold:Anti-LPS factor/recA domain
Superfamily:RecA protein, C-terminal domain
Family:RecA protein, C-terminal domain
78d1mo6a2
not modelled 17.8 14
Fold:Anti-LPS factor/recA domain
Superfamily:RecA protein, C-terminal domain
Family:RecA protein, C-terminal domain
79c2obvA_
not modelled 17.4 17
PDB header:transferase
Chain: A: PDB Molecule:s-adenosylmethionine synthetase isoform type-1;
PDBTitle: crystal structure of the human s-adenosylmethionine synthetase 1 in2 complex with the product
80c2uv1B_
not modelled 17.3 17
PDB header:inhibitor
Chain: B: PDB Molecule:host-nuclease inhibitor protein gam;
PDBTitle: hexagonal crystal form of gams from bacteriophage lambda.
81c3viqC_
not modelled 17.2 20
PDB header:recombination activator
Chain: C: PDB Molecule:swi5-dependent recombination dna repair protein 1;
PDBTitle: crystal structure of swi5-sfr1 complex from fission yeast
82c3fzvC_
not modelled 17.2 10
PDB header:transcription regulator
Chain: C: PDB Molecule:probable transcriptional regulator;
PDBTitle: crystal structure of pa01 protein, putative lysr family2 transcriptional regulator from pseudomonas aeruginosa
83c3ia8A_
not modelled 16.8 8
PDB header:metal binding protein
Chain: A: PDB Molecule:thap domain-containing protein 4;
PDBTitle: the structure of the c-terminal heme nitrobindin domain of thap2 domain-containing protein 4 from homo sapiens
84c3ispA_
not modelled 16.7 11
PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator
PDBTitle: crystal structure of argp from mycobacterium tuberculosis
85c5vtmX_
not modelled 16.7 13
PDB header:transport protein
Chain: X: PDB Molecule:type ii secretion system protein k;
PDBTitle: the crystal structure of minor pseudopilin ternary complex of xcpvwx2 from the type 2 secretion system of pseudomonas aeruginosa
86c4akkA_
not modelled 16.4 22
PDB header:transcription
Chain: A: PDB Molecule:nitrate regulatory protein;
PDBTitle: structure of the nasr transcription antiterminator
87c3qd7X_
not modelled 16.3 9
PDB header:hydrolase
Chain: X: PDB Molecule:uncharacterized protein ydal;
PDBTitle: crystal structure of ydal, a stand-alone small muts-related protein2 from escherichia coli
88c2ideE_
not modelled 16.1 18
PDB header:biosynthetic protein
Chain: E: PDB Molecule:molybdenum cofactor biosynthesis protein c;
PDBTitle: crystal structure of the molybdenum cofactor biosynthesis protein c2 (ttha1789) from thermus theromophilus hb8
89c6dk9I_
not modelled 16.1 15
PDB header:lyase
Chain: I: PDB Molecule:dna damage-inducible protein;
PDBTitle: yeast ddi2 cyanamide hydratase
90c5tf0B_
not modelled 16.1 15
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 3 n-terminal domain protein;
PDBTitle: crystal structure of glycosil hydrolase family 3 n-terminal domain2 protein from bacteroides intestinalis
91c5z4yB_
not modelled 16.0 10
PDB header:dna binding protein
Chain: B: PDB Molecule:cys regulon transcriptional activator;
PDBTitle: crystal structure of pacysb ntd domain with space group p4
92c5xfsB_
not modelled 16.0 15
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
93c5y9sD_
not modelled 15.9 7
PDB header:transcription
Chain: D: PDB Molecule:vv2_1132;
PDBTitle: crystal structure of vv2_1132, a lysr family transcriptional regulator
94c3cq0B_
not modelled 15.7 13
PDB header:transferase
Chain: B: PDB Molecule:putative transaldolase ygr043c;
PDBTitle: crystal structure of tal2_yeast
95c5ed9A_
not modelled 15.7 26
PDB header:transport protein
Chain: A: PDB Molecule:sun domain-containing protein 2;
PDBTitle: crystal structure of cc1 of mouse sun2
96c3so4C_
not modelled 15.4 16
PDB header:transferase
Chain: C: PDB Molecule:methionine-adenosyltransferase;
PDBTitle: methionine-adenosyltransferase from entamoeba histolytica
97c5ydcA_
not modelled 15.3 13
PDB header:transcription regulator
Chain: A: PDB Molecule:uncharacterized hth-type transcriptional regulator rv1828;
PDBTitle: crystal structure of mercury soaked c-terminal domain of rv1828 from2 mycobacterium tuberculosis
98c4e0uB_
not modelled 15.1 23
PDB header:transferase
Chain: B: PDB Molecule:cyclic dipeptide n-prenyltransferase;
PDBTitle: crystal structure of cdpnpt in complex with thiolodiphosphate and (s)-2 benzodiazependione
99c3ghpA_
not modelled 15.0 50
PDB header:structural protein
Chain: A: PDB Molecule:cellulosomal scaffoldin adaptor protein b;
PDBTitle: structure of the second type ii cohesin module from the adaptor scaa2 scaffoldin of acetivibrio cellulolyticus (including long c-terminal3 linker)

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite