Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3442c_(rpsI)_3861675_3862130
DateFri Aug 9 18:20:11 BST 2019
Unique Job ID7a6f36c6cd42afff
SequenceMTETTPAPQT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:67.098 Y:39.728 Z:48.611
Model (left) based on template c5o5jI_
Top template information
PDB header:ribosome
Chain: I: PDB Molecule:30s ribosomal protein s9;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 83%
126 residues ( 83% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o5jI_



100.0 90
PDB header:ribosome
Chain: I: PDB Molecule:30s ribosomal protein s9;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
2d2gy9i1



100.0 50
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
3d2vqei1



100.0 52
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Translational machinery components
4c3bbnI_



100.0 53
PDB header:ribosome
Chain: I: PDB Molecule:ribosomal protein s9;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
5c3j6vI_



100.0 31
PDB header:ribosome
Chain: I: PDB Molecule:28s ribosomal protein s9, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
6c2xzmI_



100.0 28
PDB header:ribosome
Chain: I: PDB Molecule:rps16e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
7c2zkqi_



100.0 33
PDB header:ribosomal protein/rna
Chain: I: PDB Molecule:
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
8c3zeyK_



100.0 27
PDB header:ribosome
Chain: K: PDB Molecule:40s ribosomal protein s16, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
9c5xyiQ_



100.0 30
PDB header:ribosome
Chain: Q: PDB Molecule:40s ribosomal protein s16, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
10c3j20K_



100.0 35
PDB header:ribosome
Chain: K: PDB Molecule:30s ribosomal protein s9p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (30s3 ribosomal subunit)
11c1s1hI_



100.0 34
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s16;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s4 ribosomal subunit is in file 1s1i.
12c3iz6I_



100.0 32
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s16 (s9p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
13c5ujaA_



79.1 22
PDB header:protein transport
Chain: A: PDB Molecule:bovine multidrug resistance protein 1 (mrp1),multidrug
PDBTitle: cryo-em structure of bovine multidrug resistance protein 1 (mrp1)2 bound to leukotriene c4
14c5uj9A_



78.7 22
PDB header:transport protein
Chain: A: PDB Molecule:bovine multidrug resistance protein 1 (mrp1),multidrug
PDBTitle: cryo-em structure of bovine multidrug resistance protein 1 (mrp1)
15c6bhuA_



73.9 22
PDB header:transport protein
Chain: A: PDB Molecule:multidrug resistance-associated protein 1;
PDBTitle: cryo-em structure of atp-bound, outward-facing bovine multidrug2 resistance protein 1 (mrp1)
16c3g5uB_



68.0 26
PDB header:membrane protein
Chain: B: PDB Molecule:multidrug resistance protein 1a;
PDBTitle: structure of p-glycoprotein reveals a molecular basis for2 poly-specific drug binding
17c4ry2A_



67.8 29
PDB header:transport protein/hydrolase
Chain: A: PDB Molecule:abc-type bacteriocin transporter;
PDBTitle: crystal structure of the peptidase-containing abc transporter pcat1
18c5mkkA_



67.1 23
PDB header:transport protein
Chain: A: PDB Molecule:multidrug resistance abc transporter atp-binding and
PDBTitle: crystal structure of the heterodimeric abc transporter tmrab, a2 homolog of the antigen translocation complex tap
19c5mkkB_



66.5 18
PDB header:transport protein
Chain: B: PDB Molecule:multidrug resistance abc transporter atp-binding and
PDBTitle: crystal structure of the heterodimeric abc transporter tmrab, a2 homolog of the antigen translocation complex tap
20c4f4cA_



65.0 28
PDB header:hydrolase,protein transport
Chain: A: PDB Molecule:multidrug resistance protein pgp-1;
PDBTitle: the crystal structure of the multi-drug transporter
21c3u5eh_



not modelled 62.4 20
PDB header:ribosome
Chain: H: PDB Molecule:60s ribosomal protein l9-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 60s subunit, ribosome a
22c3j3bh_



not modelled 60.9 29
PDB header:ribosome
Chain: H: PDB Molecule:60s ribosomal protein l9;
PDBTitle: structure of the human 60s ribosomal proteins
23c6c0vA_



not modelled 59.7 28
PDB header:transport protein
Chain: A: PDB Molecule:multidrug resistance protein 1;
PDBTitle: molecular structure of human p-glycoprotein in the atp-bound, outward-2 facing conformation
24c5tsiA_



not modelled 58.2 21
PDB header:membrane protein, hydrolase
Chain: A: PDB Molecule:cystic fibrosis transmembrane conductance regulator;
PDBTitle: structure of the cystic fibrosis transmembrane conductance regulator2 (cftr) from zebrafish
25c1s3bB_



not modelled 57.2 41
PDB header:oxidoreductase
Chain: B: PDB Molecule:amine oxidase [flavin-containing] b;
PDBTitle: crystal structure of maob in complex with n-methyl-n-2 propargyl-1(r)-aminoindan
26c3wmeA_



not modelled 53.7 26
PDB header:transport protein
Chain: A: PDB Molecule:atp-binding cassette, sub-family b, member 1;
PDBTitle: crystal structure of an inward-facing eukaryotic abc multidrug2 transporter
27c4aa3A_



not modelled 52.6 30
PDB header:transport protein
Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10,
PDBTitle: structure of the human mitochondrial abc transporter,2 abcb10 (plate form)
28c5ochH_



not modelled 49.4 29
PDB header:hydrolase
Chain: H: PDB Molecule:atp-binding cassette sub-family b member 8, mitochondrial;
PDBTitle: the crystal structure of human abcb8 in an outward-facing state
29d1d5ta1



not modelled 49.2 20
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
30c5ttkB_



not modelled 48.8 36
PDB header:oxidoreductase
Chain: B: PDB Molecule:amine oxidase;
PDBTitle: crystal structure of selenomethionine-incorporated nicotine2 oxidoreductase from pseudomonas putida
31c2v6oA_



not modelled 48.7 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin glutathione reductase;
PDBTitle: structure of schistosoma mansoni thioredoxin-glutathione2 reductase (smtgr)
32c1v0jB_



not modelled 48.5 33
PDB header:isomerase
Chain: B: PDB Molecule:udp-galactopyranose mutase;
PDBTitle: udp-galactopyranose mutase from mycobacterium tuberculosis
33d1wdda1



not modelled 47.1 28
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
34c3j39h_



not modelled 46.3 29
PDB header:ribosome
Chain: H: PDB Molecule:60s ribosomal protein l9;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
35c6c3oE_



not modelled 46.1 17
PDB header:transport protein
Chain: E: PDB Molecule:atp-binding cassette sub-family c member 8;
PDBTitle: cryo-em structure of human katp bound to atp and adp in quatrefoil2 form
36c3zf7k_



not modelled 45.0 32
PDB header:ribosome
Chain: K: PDB Molecule:60s ribosomal protein l10, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
37c6j0zC_



not modelled 44.4 32
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative angucycline-like polyketide oxygenase;
PDBTitle: crystal structure of alpk
38c5l22B_



not modelled 43.4 26
PDB header:protein transport
Chain: B: PDB Molecule:abc transporter (hlyb subfamily);
PDBTitle: prtd t1ss abc transporter
39c2rrlA_



not modelled 42.7 20
PDB header:protein transport
Chain: A: PDB Molecule:flagellar hook-length control protein;
PDBTitle: solution structure of the c-terminal domain of the flik
40d1rbla1



not modelled 42.0 30
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
41c1ltxR_



not modelled 40.9 20
PDB header:transferase/protein binding
Chain: R: PDB Molecule:rab escort protein 1;
PDBTitle: structure of rab escort protein-1 in complex with rab geranylgeranyl2 transferase and isoprenoid
42c3cp8C_



not modelled 40.1 27
PDB header:oxidoreductase
Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl
PDBTitle: crystal structure of gida from chlorobium tepidum
43c3cp2A_



not modelled 39.0 32
PDB header:oxidoreductase
Chain: A: PDB Molecule:trna uridine 5-carboxymethylaminomethyl
PDBTitle: crystal structure of gida from e. coli
44c2yl4A_



not modelled 39.0 29
PDB header:membrane protein
Chain: A: PDB Molecule:atp-binding cassette sub-family b member 10,
PDBTitle: structure of the human mitochondrial abc transporter, abcb10
45c5u1dB_



not modelled 38.0 26
PDB header:transport protein
Chain: B: PDB Molecule:antigen peptide transporter 2;
PDBTitle: cryo-em structure of the human tap atp-binding cassette transporter
46c4i58A_



not modelled 37.8 38
PDB header:oxidoreductase
Chain: A: PDB Molecule:cyclohexylamine oxidase;
PDBTitle: cyclohexylamine oxidase from brevibacterium oxydans ih-35a
47c6on2A_



not modelled 37.6 19
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent protease la;
PDBTitle: lon protease from yersinia pestis with y2853 substrate
48c3qf4A_



not modelled 37.2 26
PDB header:transport protein
Chain: A: PDB Molecule:abc transporter, atp-binding protein;
PDBTitle: crystal structure of a heterodimeric abc transporter in its inward-2 facing conformation
49c5ykfH_



not modelled 36.5 20
PDB header:membrane protein
Chain: H: PDB Molecule:atp-binding cassette sub-family c member 8 isoform x2;
PDBTitle: structure of pancreatic atp-sensitive potassium channel bound with2 glibenclamide and atpgammas (3d class1 at 4.33a)
50c4a1eU_



not modelled 36.1 35
PDB header:ribosome
Chain: U: PDB Molecule:rpl35;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1
51c3jskN_



not modelled 35.9 21
PDB header:biosynthetic protein
Chain: N: PDB Molecule:cypbp37 protein;
PDBTitle: thiazole synthase from neurospora crassa
52c2hydB_



not modelled 35.6 21
PDB header:transport protein
Chain: B: PDB Molecule:abc transporter homolog;
PDBTitle: multidrug abc transporter sav1866
53d2bcgg1



not modelled 35.2 17
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
54c3k7tB_



not modelled 34.1 40
PDB header:oxidoreductase
Chain: B: PDB Molecule:6-hydroxy-l-nicotine oxidase;
PDBTitle: crystal structure of apo-form 6-hydroxy-l-nicotine oxidase, crystal2 form p3121
55d1hyua1



not modelled 33.0 23
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
56c5do7A_



not modelled 32.7 23
PDB header:transport protein
Chain: A: PDB Molecule:atp-binding cassette sub-family g member 5;
PDBTitle: crystal structure of the human sterol transporter abcg5/abcg8
57c2uzzD_



not modelled 32.5 24
PDB header:oxidoreductase
Chain: D: PDB Molecule:n-methyl-l-tryptophan oxidase;
PDBTitle: x-ray structure of n-methyl-l-tryptophan oxidase (mtox)
58c5wgyA_



not modelled 32.3 29
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: A: PDB Molecule:flavin-dependent halogenase;
PDBTitle: crystal structure of mala' c112s/c128s, malbrancheamide b complex
59c4cnjD_



not modelled 32.0 30
PDB header:oxidoreductase
Chain: D: PDB Molecule:l-amino acid oxidase;
PDBTitle: l-aminoacetone oxidase from streptococcus oligofermentans2 belongs to a new 3-domain family of bacterial flavoproteins
60c5u71A_



not modelled 31.9 24
PDB header:membrane protein, hydrolase
Chain: A: PDB Molecule:cystic fibrosis transmembrane conductance regulator;
PDBTitle: structure of human cystic fibrosis transmembrane conductance regulator2 (cftr)
61c2zxiC_



not modelled 31.7 38
PDB header:fad-binding protein
Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme
PDBTitle: structure of aquifex aeolicus gida in the form ii crystal
62c6bznA_



not modelled 31.4 23
PDB header:flavoprotein
Chain: A: PDB Molecule:halogenase pltm;
PDBTitle: crystal structure of halogenase pltm
63c4y4nE_



not modelled 31.0 31
PDB header:biosynthetic protein
Chain: E: PDB Molecule:putative ribose 1,5-bisphosphate isomerase;
PDBTitle: thiazole synthase thi4 from methanococcus igneus
64d1gesa1



not modelled 30.9 36
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
65c3rhaA_



not modelled 29.1 32
PDB header:oxidoreductase
Chain: A: PDB Molecule:putrescine oxidase;
PDBTitle: the crystal structure of oxidoreductase from arthrobacter aurescens
66c5wuaF_



not modelled 28.8 14
PDB header:transport protein
Chain: F: PDB Molecule:sur1;
PDBTitle: structure of a pancreatic atp-sensitive potassium channel
67c4yshA_



not modelled 27.6 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycine oxidase;
PDBTitle: crystal structure of glycine oxidase from geobacillus kaustophilus
68c4ia6B_



not modelled 26.8 32
PDB header:immune system
Chain: B: PDB Molecule:myosin-crossreactive antigen;
PDBTitle: hydratase from lactobacillus acidophilus in a ligand bound form (la2 lah)
69c2olnA_



not modelled 26.7 43
PDB header:oxidoreductase
Chain: A: PDB Molecule:nikd protein;
PDBTitle: nikd, an unusual amino acid oxidase essential for2 nikkomycin biosynthesis: closed form at 1.15 a resolution
70c1ryiB_



not modelled 26.0 33
PDB header:oxidoreductase
Chain: B: PDB Molecule:glycine oxidase;
PDBTitle: structure of glycine oxidase with bound inhibitor glycolate
71c3g05B_



not modelled 26.0 32
PDB header:rna binding protein
Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme
PDBTitle: crystal structure of n-terminal domain (2-550) of e.coli mnmg
72c2qaeA_



not modelled 25.6 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrolipoyl dehydrogenase;
PDBTitle: crystal structure analysis of trypanosoma cruzi lipoamide2 dehydrogenase
73c6c87A_



not modelled 25.2 21
PDB header:protein transport
Chain: A: PDB Molecule:rab gdp dissociation inhibitor alpha;
PDBTitle: crystal structure of rab gdp dissociation inhibitor alpha from2 naegleria fowleri
74c1f8sA_



not modelled 25.1 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-amino acid oxidase;
PDBTitle: crystal structure of l-amino acid oxidase from calloselasma2 rhodostoma, complexed with three molecules of o-aminobenzoate.
75d1rrea_



not modelled 25.1 22
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:ATP-dependent protease Lon (La), catalytic domain
76c2nvkX_



not modelled 24.4 32
PDB header:oxidoreductase
Chain: X: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of thioredoxin reductase from drosophila2 melanogaster
77d1h6va1



not modelled 23.7 32
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
78c5ez7A_



not modelled 23.1 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavoenzyme pa4991;
PDBTitle: crystal structure of the fad dependent oxidoreductase pa4991 from2 pseudomonas aeruginosa
79c1dxlC_



not modelled 23.0 32
PDB header:oxidoreductase
Chain: C: PDB Molecule:dihydrolipoamide dehydrogenase;
PDBTitle: dihydrolipoamide dehydrogenase of glycine decarboxylase2 from pisum sativum
80c3ihgA_



not modelled 21.7 20
PDB header:flavoprotein, oxidoreductase
Chain: A: PDB Molecule:rdme;
PDBTitle: crystal structure of a ternary complex of aklavinone-11 hydroxylase2 with fad and aklavinone
81c6bwtD_



not modelled 21.6 27
PDB header:oxidoreductase
Chain: D: PDB Molecule:thioredoxin reductase;
PDBTitle: 2.45 angstrom resolution crystal structure thioredoxin reductase from2 francisella tularensis.
82c5ochF_



not modelled 21.6 32
PDB header:hydrolase
Chain: F: PDB Molecule:atp-binding cassette sub-family b member 8, mitochondrial;
PDBTitle: the crystal structure of human abcb8 in an outward-facing state
83c3dmeB_



not modelled 21.5 38
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved exported protein;
PDBTitle: crystal structure of conserved exported protein from bordetella2 pertussis. northeast structural genomics target ber141
84d2hzaa1



not modelled 21.0 22
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
85d2i0za1



not modelled 20.3 32
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:HI0933 N-terminal domain-like
86c3m6aC_



not modelled 20.3 24
PDB header:hydrolase
Chain: C: PDB Molecule:atp-dependent protease la 1;
PDBTitle: crystal structure of bacillus subtilis lon c-terminal domain
87d2gf3a1



not modelled 20.2 24
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
88d1chua2



not modelled 20.0 26
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
89c5e7sG_



not modelled 19.9 19
PDB header:hydrolase
Chain: G: PDB Molecule:lon protease;
PDBTitle: hexameric structure of a lona protease domain in active state
90d2gmha1



not modelled 19.9 33
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
91d1seza1



not modelled 19.8 37
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD-linked reductases, N-terminal domain
92c2cfyB_



not modelled 19.8 35
PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin reductase 1;
PDBTitle: crystal structure of human thioredoxin reductase 1
93c3nyeA_



not modelled 19.7 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-arginine dehydrogenase;
PDBTitle: crystal structure of pseudomonas aeruginosa d-arginine dehydrogenase2 in complex with imino-arginine
94d1dxla1



not modelled 19.5 32
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
95c3uteB_



not modelled 19.4 35
PDB header:isomerase
Chain: B: PDB Molecule:udp-galactopyranose mutase;
PDBTitle: crystal structure of aspergillus fumigatus udp galactopyranose mutase2 sulfate complex
96c1z47B_



not modelled 19.3 29
PDB header:ligand binding protein
Chain: B: PDB Molecule:putative abc-transporter atp-binding protein;
PDBTitle: structure of the atpase subunit cysa of the putative sulfate atp-2 binding cassette (abc) transporter from alicyclobacillus3 acidocaldarius
97c2e1mA_



not modelled 19.3 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:l-glutamate oxidase;
PDBTitle: crystal structure of l-glutamate oxidase from streptomyces sp. x-119-6
98c4b1bB_



not modelled 18.8 36
PDB header:oxidoreductase
Chain: B: PDB Molecule:thioredoxin reductase;
PDBTitle: crystal structure of plasmodium falciparum oxidised2 thioredoxin reductase at 2.9 angstrom
99d3lada1



not modelled 18.8 30
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains

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