Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3446c_(-)_3863496_3864710
DateFri Aug 9 18:20:12 BST 2019
Unique Job IDa989a3703e6aa27f
SequenceVSPHRAVIEA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:35.240 Y:38.969 Z:38.590
Model (left) based on template c2xb3A_
Top template information
PDB header:photosynthesis
Chain: A: PDB Molecule:psbp protein;
PDBTitle: the structure of cyanobacterial psbp
Confidence and coverage
Confidence: 97.2% Coverage: 32%
128 residues ( 32% of your sequence) have been modelled with 97.2% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
275 residues ( 68%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2xb3A_



97.2 14
PDB header:photosynthesis
Chain: A: PDB Molecule:psbp protein;
PDBTitle: the structure of cyanobacterial psbp
2c2lnjA_



96.4 12
PDB header:photosynthesis
Chain: A: PDB Molecule:putative uncharacterized protein sll1418;
PDBTitle: solution structure of cyanobacterial psbp (cyanop) from synechocystis2 sp. pcc 6803
3d1v2ba_



95.9 14
Fold:Mog1p/PsbP-like
Superfamily:Mog1p/PsbP-like
Family:PsbP-like
4d1jcea1



94.8 13
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
5c4ol4A_



94.6 19
PDB header:lipid binding protein
Chain: A: PDB Molecule:proline-rich 28 kda antigen;
PDBTitle: crystal structure of secreted proline rich antigen mtc28 (rv0040c)2 from mycobacterium tuberculosis
6d1dkgd1



94.3 14
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
7c2vu4A_



93.5 13
PDB header:photosynthesis
Chain: A: PDB Molecule:oxygen-evolving enhancer protein 2;
PDBTitle: structure of psbp protein from spinacia oleracea at 1.98 a2 resolution
8c6e8aA_



92.6 25
PDB header:unknown function
Chain: A: PDB Molecule:duf1795 domain-containing protein;
PDBTitle: crystal structure of dcrb from salmonella enterica at 1.92 angstroms2 resolution
9d2e8aa1



92.6 10
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
10c2v7yA_



92.5 14
PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state
11d1tu1a_



91.4 13
Fold:Mog1p/PsbP-like
Superfamily:Mog1p/PsbP-like
Family:PA0094-like
12d1bupa1



91.3 11
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
13c4j8fA_



87.0 9
PDB header:chaperone
Chain: A: PDB Molecule:heat shock 70 kda protein 1a/1b, hsc70-interacting protein;
PDBTitle: crystal structure of a fusion protein containing the nbd of hsp70 and2 the middle domain of hip
14c5obuA_



85.0 12
PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein dnak;
PDBTitle: mycoplasma genitalium dnak deletion mutant lacking sbdalpha in complex2 with amppnp.
15c2khoA_



83.8 13
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 70;
PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone (1-605)2 complexed with adp and substrate
16c3d2fC_



83.1 11
PDB header:chaperone
Chain: C: PDB Molecule:heat shock protein homolog sse1;
PDBTitle: crystal structure of a complex of sse1p and hsp70
17c4rtfD_



82.3 16
PDB header:chaperone
Chain: D: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of molecular chaperone dnak from mycobacterium2 tuberculosis h37rv
18c3h1qB_



81.5 12
PDB header:structural protein
Chain: B: PDB Molecule:ethanolamine utilization protein eutj;
PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans
19c5mb9B_



77.2 16
PDB header:chaperone
Chain: B: PDB Molecule:putative heat shock protein;
PDBTitle: crystal structure of the eukaryotic ribosome associated complex (rac),2 a unique hsp70/hsp40 pair
20c3lydA_



73.6 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of putative uncharacterized protein from jonesia2 denitrificans
21c1jcgA_



not modelled 72.4 15
PDB header:structural protein
Chain: A: PDB Molecule:rod shape-determining protein mreb;
PDBTitle: mreb from thermotoga maritima, amppnp
22c3c7nB_



not modelled 68.9 11
PDB header:chaperone/chaperone
Chain: B: PDB Molecule:heat shock cognate;
PDBTitle: structure of the hsp110:hsc70 nucleotide exchange complex
23c4gniA_



not modelled 68.0 16
PDB header:chaperone
Chain: A: PDB Molecule:putative heat shock protein;
PDBTitle: structure of the ssz1 atpase bound to atp and magnesium
24c5e84B_



not modelled 67.6 12
PDB header:chaperone
Chain: B: PDB Molecule:78 kda glucose-regulated protein;
PDBTitle: atp-bound state of bip
25c5jygA_



not modelled 65.0 16
PDB header:structural protein
Chain: A: PDB Molecule:actin-like atpase;
PDBTitle: cryo-em structure of the mamk filament at 6.5 a
26c5tkyA_



not modelled 49.6 9
PDB header:chaperone
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the co-translational hsp70 chaperone ssb in the2 atp-bound, open conformation
27c1dkgD_



not modelled 33.4 14
PDB header:complex (hsp24/hsp70)
Chain: D: PDB Molecule:molecular chaperone dnak;
PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak
28c4pl7B_



not modelled 29.8 13
PDB header:structural protein, contractile protein
Chain: B: PDB Molecule:actin,thymosin beta-4;
PDBTitle: structure of komagataella pastoris actin-thymosin beta4 hybrid
29c6gfaA_



not modelled 29.0 16
PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 105 kda;
PDBTitle: structure of nucleotide binding domain of hsp110, atp and mg2+2 complexed
30c3iucC_



not modelled 28.4 11
PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated
PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp
31c2lf0A_



not modelled 20.6 55
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein yibl;
PDBTitle: solution structure of sf3636, a two-domain unknown function protein2 from shigella flexneri 2a, determined by joint refinement of nmr,3 residual dipolar couplings and small-angle x-ray scattering, nesg4 target sfr339/ocsp target sf3636
32c5afuB_



not modelled 15.8 15
PDB header:motor protein
Chain: B: PDB Molecule:dynactin;
PDBTitle: cryo-em structure of dynein tail-dynactin-bicd2n complex
33c6igmG_



not modelled 15.8 9
PDB header:transcription
Chain: G: PDB Molecule:actin-related protein 6;
PDBTitle: cryo-em structure of human srcap complex
34c5tt2D_



not modelled 15.0 38
PDB header:lyase
Chain: D: PDB Molecule:cystathionine gamma-lyase;
PDBTitle: inactive conformation of engineered human cystathionine gamma lyase2 (e59n, r119l, e339v) to depleting methionine
35c4czeA_



not modelled 14.5 14
PDB header:structural protein
Chain: A: PDB Molecule:rod shape-determining protein mreb;
PDBTitle: c. crescentus mreb, double filament, empty
36c1o1f4_



not modelled 13.6 13
PDB header:contractile protein
Chain: 4: PDB Molecule:skeletal muscle actin;
PDBTitle: molecular models of averaged rigor crossbridges from tomograms of2 insect flight muscle
37c6e5fA_



not modelled 12.8 19
PDB header:lipid binding protein
Chain: A: PDB Molecule:lipid binding protein lpqn;
PDBTitle: crystal structure of lpqn involved in cell envelope biogenesis of2 mycobacterium tuberculosis
38c5yk2A_



not modelled 12.4 14
PDB header:transport protein
Chain: A: PDB Molecule:probable conserved atp-binding protein abc transporter;
PDBTitle: the complex structure of rv3197-erythromycin from mycobacterium2 tuberculosis
39c4jd2B_



not modelled 10.9 15
PDB header:structural protein
Chain: B: PDB Molecule:actin-related protein 2;
PDBTitle: crystal structure of bos taurus arp2/3 complex binding with mus2 musculus gmf
40d1n8pa_



not modelled 10.8 32
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
41c4pedA_



not modelled 10.6 12
PDB header:transferase
Chain: A: PDB Molecule:chaperone activity of bc1 complex-like, mitochondrial;
PDBTitle: mitochondrial adck3 employs an atypical protein kinase-like fold to2 enable coenzyme q biosynthes
42c2nmpC_



not modelled 9.6 37
PDB header:lyase
Chain: C: PDB Molecule:cystathionine gamma-lyase;
PDBTitle: crystal structure of human cystathionine gamma lyase
43c2bsjB_



not modelled 9.6 25
PDB header:chaperone
Chain: B: PDB Molecule:chaperone protein syct;
PDBTitle: native crystal structure of the type iii secretion chaperone syct from2 yersinia enterocolitica
44d1w96a1



not modelled 9.5 20
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:BC C-terminal domain-like
45c3u7iB_



not modelled 9.4 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:fmn-dependent nadh-azoreductase 1;
PDBTitle: the crystal structure of fmn-dependent nadh-azoreductase 1 (gbaa0966)2 from bacillus anthracis str. ames ancestor
46c4mtkD_



not modelled 9.0 19
PDB header:toxin
Chain: D: PDB Molecule:vgrg1;
PDBTitle: crystal structure of pa0091 vgrg1, the central spike of the type vi2 secretion system
47c3lcmB_



not modelled 8.9 36
PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159
48d2p5zx1



not modelled 8.9 19
Fold:OB-fold
Superfamily:gp5 N-terminal domain-like
Family:gp4 N-terminal domain-like
49c6aufB_



not modelled 8.3 24
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase-like protein;
PDBTitle: crystal structure of metalo beta lactamases mim-1 from novosphingobium2 pentaromativorans
50c4kboA_



not modelled 8.3 10
PDB header:signaling protein
Chain: A: PDB Molecule:stress-70 protein, mitochondrial;
PDBTitle: crystal structure of the human mortalin (grp75) atpase domain in the2 apo form
51c2khrA_



not modelled 7.7 69
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein mbth;
PDBTitle: solution structure of rv2377c, a mbth-like protein from mycobacterium2 tuberculosis
52c5jn6A_



not modelled 7.6 22
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the nmr solution structure of rpa3313
53d1w96c1



not modelled 7.5 20
Fold:Barrel-sandwich hybrid
Superfamily:Rudiment single hybrid motif
Family:BC C-terminal domain-like
54c6e0sA_



not modelled 7.5 15
PDB header:hydrolase
Chain: A: PDB Molecule:mem-a1;
PDBTitle: crystal structure of mem-a1, a subclass b3 metallo-beta-lactamase2 isolated from a soil metagenome library
55c2v9cA_



not modelled 7.4 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:fmn-dependent nadh-azoreductase 1;
PDBTitle: x-ray crystallographic structure of a pseudomonas2 aeruginosa azoreductase in complex with methyl red.
56d1ig4a_



not modelled 7.1 20
Fold:DNA-binding domain
Superfamily:DNA-binding domain
Family:Methyl-CpG-binding domain, MBD
57c2lpdA_



not modelled 7.0 36
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of a mbth-like protein from burkholderia2 pseudomallei, the etiological agent responsible for melioidosis,3 seattle structural genomics center for infectious disease target4 bupsa.13472.b
58c5u89B_



not modelled 7.0 23
PDB header:hydrolase/inhibitor
Chain: B: PDB Molecule:mbth domain protein;
PDBTitle: crystal structure of a cross-module fragment from the dimodular nrps2 dhbf
59d1ei5a2



not modelled 6.8 31
Fold:Streptavidin-like
Superfamily:D-aminopeptidase, middle and C-terminal domains
Family:D-aminopeptidase, middle and C-terminal domains
60d1dy2a_



not modelled 6.6 27
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Endostatin
61c5oqml_



not modelled 6.6 22
PDB header:transcription
Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii subunit rpabc4;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih and2 core mediator
62d1hc8a_



not modelled 6.4 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Ribosomal protein L11, C-terminal domain
Family:Ribosomal protein L11, C-terminal domain
63d1mmsa1



not modelled 6.4 12
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Ribosomal protein L11, C-terminal domain
Family:Ribosomal protein L11, C-terminal domain
64c2ky8A_



not modelled 6.3 24
PDB header:transcription/dna
Chain: A: PDB Molecule:methyl-cpg-binding domain protein 2;
PDBTitle: solution structure and dynamic analysis of chicken mbd2 methyl binding2 domain bound to a target methylated dna sequence
65d1xbpg1



not modelled 6.2 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Ribosomal protein L11, C-terminal domain
Family:Ribosomal protein L11, C-terminal domain
66d1rlia_



not modelled 6.2 15
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Hypothetical protein YwqN
67c5f4bB_



not modelled 6.2 8
PDB header:oxidoreductase
Chain: B: PDB Molecule:nad(p)h dehydrogenase (quinone);
PDBTitle: structure of b. abortus wrba-related protein a (wrpa)
68c3rpeA_



not modelled 6.1 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:modulator of drug activity b;
PDBTitle: 1.1 angstrom crystal structure of putative modulator of drug activity2 (mdab) from yersinia pestis co92.
69d2gycg1



not modelled 5.7 6
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Ribosomal protein L11, C-terminal domain
Family:Ribosomal protein L11, C-terminal domain
70d1vqoi1



not modelled 5.5 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Ribosomal protein L11, C-terminal domain
Family:Ribosomal protein L11, C-terminal domain
71c1vq8I_



not modelled 5.5 18
PDB header:ribosome
Chain: I: PDB Molecule:50s ribosomal protein l11p;
PDBTitle: the structure of ccda-phe-cap-bio and the antibiotic sparsomycin bound2 to the large ribosomal subunit of haloarcula marismortui
72d1d4aa_



not modelled 5.5 21
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
73c5iqkB_



not modelled 5.5 14
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase rm3;
PDBTitle: rm3 metallo-beta-lactamase
74d2qwxa1



not modelled 5.3 21
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Quinone reductase
75c4r81C_



not modelled 5.2 36
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh dehydrogenase;
PDBTitle: nad(p)h:quinone oxidoreductase from methanothermobacter marburgensis
76c2zkiH_



not modelled 5.2 21
PDB header:transcription
Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding
PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872)
77c5o5oD_



not modelled 5.1 31
PDB header:chaperone
Chain: D: PDB Molecule:rnase adapter protein rapz;
PDBTitle: x-ray crystal structure of rapz from escherichia coli (p32 space2 group)
78d1c3ga1



not modelled 5.1 2
Fold:HSP40/DnaJ peptide-binding domain
Superfamily:HSP40/DnaJ peptide-binding domain
Family:HSP40/DnaJ peptide-binding domain
79c2lazA_



not modelled 5.1 21
PDB header:signaling protein/transcription
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1;
PDBTitle: structure of the first ww domain of human smurf1 in complex with a2 mono-phosphorylated human smad1 derived peptide

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below