Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3453_(-)_3874583_3874915
DateFri Aug 9 18:20:12 BST 2019
Unique Job ID377b0cd89919752b
SequenceMPGVITNSES ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:39.795 Y:58.023 Z:29.297
Model (left) based on template c2jlnA_
Top template information
PDB header:membrane protein
Chain: A: PDB Molecule:mhp1;
PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
Confidence and coverage
Confidence: 98.3% Coverage: 74%
81 residues ( 74% of your sequence) have been modelled with 98.3% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2jlnA_



98.3 12
PDB header:membrane protein
Chain: A: PDB Molecule:mhp1;
PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
2c5nvaA_



71.3 14
PDB header:membrane protein
Chain: A: PDB Molecule:putative sodium:solute symporter;
PDBTitle: substrate-bound outward-open state of a na+-coupled sialic acid2 symporter reveals a novel na+-site
3c5edlA_



61.3 10
PDB header:transport protein
Chain: A: PDB Molecule:putative hmp/thiamine permease protein ykoe;
PDBTitle: crystal structure of an s-component of ecf transporter
4c5oqtA_



45.5 10
PDB header:transport protein
Chain: A: PDB Molecule:amino acid transporter;
PDBTitle: crystal structure of a bacterial cationic amino acid transporter (cat)2 homologue
5c4b03A_



33.0 13
PDB header:virus
Chain: A: PDB Molecule:dengue virus 1 e protein;
PDBTitle: 6a electron cryomicroscopy structure of immature dengue virus serotype2 1
6c3giaA_



25.4 10
PDB header:transport protein
Chain: A: PDB Molecule:uncharacterized protein mj0609;
PDBTitle: crystal structure of apct transporter
7c5ireA_



20.0 22
PDB header:virus
Chain: A: PDB Molecule:e protein;
PDBTitle: the cryo-em structure of zika virus
8c6f2wA_



17.7 15
PDB header:transport protein
Chain: A: PDB Molecule:putative amino acid/polyamine transport protein;
PDBTitle: bacterial asc transporter crystal structure in open to in conformation
9c4ymuC_



15.4 16
PDB header:protein binding/transport protein
Chain: C: PDB Molecule:abc-type amino acid transport system, permease component;
PDBTitle: crystal structure of an amino acid abc transporter complex with2 arginines and atps
10d1pw4a_



14.9 12
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:Glycerol-3-phosphate transporter
11c4k1cB_



13.7 12
PDB header:membrane protein/metal transport
Chain: B: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
12c5b7iC_



13.0 16
PDB header:hydrolase/unknown function
Chain: C: PDB Molecule:uncharacterized protein acrf3;
PDBTitle: cas3-acrf3 complex
13c4ouaB_



12.2 10
PDB header:oxidoreductase
Chain: B: PDB Molecule:latent form of ppo4 tyrosinase;
PDBTitle: coexistent single-crystal structure of latent and active mushroom2 tyrosinase (abppo4) mediated by a hexatungstotellurate(vi)
14c3dh4A_



12.0 15
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus
15c3lrcC_



11.6 18
PDB header:transport protein
Chain: C: PDB Molecule:arginine/agmatine antiporter;
PDBTitle: structure of e. coli adic (p1)
16c1p58C_



10.1 13
PDB header:virus
Chain: C: PDB Molecule:major envelope protein e;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
17c4qidB_



10.0 11
PDB header:membrane protein
Chain: B: PDB Molecule:bacteriorhodopsin-i;
PDBTitle: crystal structure of haloquadratum walsbyi bacteriorhodopsin
18c3f4yF_



9.6 21
PDB header:viral protein
Chain: F: PDB Molecule:mutant peptide derived from hiv gp41 chr domain;
PDBTitle: hiv gp41 six-helix bundle containing a mutant chr alpha-2 peptide sequence
19d1e5xa_



9.4 27
Fold:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Superfamily:Tryptophan synthase beta subunit-like PLP-dependent enzymes
Family:Tryptophan synthase beta subunit-like PLP-dependent enzymes
20c3da1A_



9.4 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:glycerol-3-phosphate dehydrogenase;
PDBTitle: x-ray structure of the glycerol-3-phosphate dehydrogenase2 from bacillus halodurans complexed with fad. northeast3 structural genomics consortium target bhr167.
21d1d4ua1



not modelled 9.1 22
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:DNA repair factor XPA DNA- and RPA-binding domain, C-terminal subdomain
22c4k1cA_



not modelled 9.1 16
PDB header:membrane protein/metal transport
Chain: A: PDB Molecule:vacuolar calcium ion transporter;
PDBTitle: vcx1 calcium/proton exchanger
23d1z9ha1



not modelled 9.0 17
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
24d1u7la_



not modelled 8.9 20
Fold:Vacuolar ATP synthase subunit C
Superfamily:Vacuolar ATP synthase subunit C
Family:Vacuolar ATP synthase subunit C
25c3g7aB_



not modelled 8.9 17
PDB header:viral protein
Chain: B: PDB Molecule:chimeric alpha+alpha/beta-peptide analogue of the hiv gp41
PDBTitle: hiv gp41 six-helix bundle composed of a chimeric alpha+alpha/beta-2 peptide analogue of the chr domain in complex with an nhr domain3 alpha-peptide
26c2rghA_



not modelled 8.7 38
PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
27d1uaza_



not modelled 8.4 8
Fold:Family A G protein-coupled receptor-like
Superfamily:Family A G protein-coupled receptor-like
Family:Bacteriorhodopsin-like
28c2rgoA_



not modelled 8.3 38
PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
29c5o6vC_



not modelled 8.2 19
PDB header:virus
Chain: C: PDB Molecule:envelope protein;
PDBTitle: the cryo-em structure of tick-borne encephalitis virus complexed with2 fab fragment of neutralizing antibody 19/1786
30d1xdpa4



not modelled 8.0 23
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Polyphosphate kinase C-terminal domain
31d2o8ra4



not modelled 7.8 38
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Polyphosphate kinase C-terminal domain
32d2qrra1



not modelled 7.7 25
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:NIL domain-like
33c4dl0I_



not modelled 7.6 20
PDB header:hydrolase
Chain: I: PDB Molecule:v-type proton atpase subunit c;
PDBTitle: crystal structure of the heterotrimeric egchead peripheral stalk2 complex of the yeast vacuolar atpase
34c1ceuA_



not modelled 7.5 22
PDB header:viral protein
Chain: A: PDB Molecule:protein (hiv-1 regulatory protein n-terminal
PDBTitle: nmr structure of the (1-51) n-terminal domain of the hiv-12 regulatory protein
35d2yvxa3



not modelled 7.5 14
Fold:MgtE membrane domain-like
Superfamily:MgtE membrane domain-like
Family:MgtE membrane domain-like
36c3wdoA_



not modelled 7.1 21
PDB header:transport protein
Chain: A: PDB Molecule:mfs transporter;
PDBTitle: structure of e. coli yajr transporter
37c6bi6A_



not modelled 7.1 56
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein yejg;
PDBTitle: solution nmr structure of uncharacterized protein yejg
38c2p3xA_



not modelled 6.8 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:polyphenol oxidase, chloroplast;
PDBTitle: crystal structure of grenache (vitis vinifera) polyphenol2 oxidase
39c1a87A_



not modelled 6.7 20
PDB header:bacteriocin
Chain: A: PDB Molecule:colicin n;
PDBTitle: colicin n
40d1a87a_



not modelled 6.7 20
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
41c5wsnC_



not modelled 6.6 15
PDB header:virus
Chain: C: PDB Molecule:e protein;
PDBTitle: structure of japanese encephalitis virus
42d2c0sa1



not modelled 6.5 18
Fold:ROP-like
Superfamily:BAS1536-like
Family:BAS1536-like
43c5sv1Y_



not modelled 6.4 26
PDB header:transport protein
Chain: Y: PDB Molecule:biopolymer transport protein exbd;
PDBTitle: structure of the exbb/exbd complex from e. coli at ph 4.5
44c5yo8B_



not modelled 6.4 15
PDB header:lyase
Chain: B: PDB Molecule:tetraprenyl-beta-curcumene synthase;
PDBTitle: crystal structure of beta-c25/c30/c35-prene synthase
45c5oqmQ_



not modelled 6.1 23
PDB header:transcription
Chain: Q: PDB Molecule:transcription initiation factor iif subunit alpha;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih and2 core mediator
46c5nikK_



not modelled 6.1 14
PDB header:transport protein
Chain: K: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of the macab-tolc abc-type tripartite multidrug efflux pump
47c4fbzA_



not modelled 6.0 14
PDB header:membrane protein
Chain: A: PDB Molecule:deltarhodopsin;
PDBTitle: crystal structure of deltarhodopsin from haloterrigena thermotolerans
48c5lnko_



not modelled 6.0 15
PDB header:oxidoreductase
Chain: O: PDB Molecule:
PDBTitle: entire ovine respiratory complex i
49c5ejoA_



not modelled 5.9 23
PDB header:nuclear protein
Chain: A: PDB Molecule:chromatin assembly factor 1 subunit p90;
PDBTitle: crystal structure of the winged helix domain in chromatin assembly2 factor 1 subunit p90
50c1c0iA_



not modelled 5.9 29
PDB header:oxidoreductase
Chain: A: PDB Molecule:d-amino acid oxidase;
PDBTitle: crystal structure of d-amino acid oxidase in complex with two2 anthranylate molecules
51d2mysa2



not modelled 5.6 22
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Motor proteins
52c6dg6F_



not modelled 5.6 50
PDB header:biosynthetic protein
Chain: F: PDB Molecule:neoleukin-2/15;
PDBTitle: structure of a de novo designed interleukin-2/interleukin-15 mimetic
53c1xioA_



not modelled 5.6 14
PDB header:signaling protein
Chain: A: PDB Molecule:anabaena sensory rhodopsin;
PDBTitle: anabaena sensory rhodopsin
54d1xioa_



not modelled 5.6 14
Fold:Family A G protein-coupled receptor-like
Superfamily:Family A G protein-coupled receptor-like
Family:Bacteriorhodopsin-like
55c2y9xC_



not modelled 5.4 18
PDB header:oxidoreductase
Chain: C: PDB Molecule:polyphenol oxidase;
PDBTitle: crystal structure of ppo3, a tyrosinase from agaricus bisporus, in2 deoxy-form that contains additional unknown lectin-like subunit,3 with inhibitor tropolone
56c2k53A_



not modelled 5.4 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:a3dk08 protein;
PDBTitle: nmr solution structure of a3dk08 protein from clostridium2 thermocellum: northeast structural genomics consortium3 target cmr9
57d1y7ma2



not modelled 5.3 25
Fold:LysM domain
Superfamily:LysM domain
Family:LysM domain
58c1oy7C_



not modelled 5.3 15
PDB header:apoptosis/peptide
Chain: C: PDB Molecule:baculoviral iap repeat-containing protein 7;
PDBTitle: structure and function analysis of peptide antagonists of melanoma2 inhibitor of apoptosis (ml-iap)
59c2enkA_



not modelled 5.3 11
PDB header:signaling protein
Chain: A: PDB Molecule:solute carrier family 30 member 9;
PDBTitle: solution structure of a putativ dna-binding domain of the2 humansolute carrier family 30 (zinc transporter) protein
60d3ceda1



not modelled 5.2 13
Fold:Ferredoxin-like
Superfamily:ACT-like
Family:NIL domain-like

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Transmembrane helix prediction 

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