Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3454_(-)_3875001_3876269
DateFri Aug 9 18:20:12 BST 2019
Unique Job IDdc1303f5283fcee8
SequenceMAQGLKLGLH ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:56.062 Y:71.247 Z:55.004
Model (left) based on template c4ainB_
Top template information
PDB header:membrane protein
Chain: B: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of betp with asymmetric protomers.
Confidence and coverage
Confidence: 99.8% Coverage: 66%
280 residues ( 66% of your sequence) have been modelled with 99.8% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
383 residues ( 91%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4ainB_
99.8 14
PDB header:membrane protein
Chain: B: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of betp with asymmetric protomers.
2c3hfxA_
99.8 11
PDB header:transport protein
Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter;
PDBTitle: crystal structure of carnitine transporter
3c2jlnA_
99.8 14
PDB header:membrane protein
Chain: A: PDB Molecule:mhp1;
PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
4c2w8aC_
99.8 14
PDB header:membrane protein
Chain: C: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate
5c5i6xA_
99.2 9
PDB header:membrane protein
Chain: A: PDB Molecule:sodium-dependent serotonin transporter;
PDBTitle: x-ray structure of the ts3 human serotonin transporter complexed with2 paroxetine at the central site
6c5nvaA_
99.1 11
PDB header:membrane protein
Chain: A: PDB Molecule:putative sodium:solute symporter;
PDBTitle: substrate-bound outward-open state of a na+-coupled sialic acid2 symporter reveals a novel na+-site
7c4m48A_
99.1 10
PDB header:transport protein
Chain: A: PDB Molecule:transporter;
PDBTitle: x-ray structure of dopamine transporter elucidates antidepressant2 mechanism
8c2xq2A_
98.9 11
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: structure of the k294a mutant of vsglt
9c6csfC_
98.7 10
PDB header:membrane protein
Chain: C: PDB Molecule:sodium/alanine symporter agcs;
PDBTitle: crystal structure of sodium/alanine symporter agcs with d-alanine2 bound
10c3dh4A_
98.7 13
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus
11c5m87A_
98.6 9
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of eremococcus coleocola manganese transporter
12d2a65a1
98.6 11
Fold:SNF-like
Superfamily:SNF-like
Family:SNF-like
13c4wgvC_
98.4 11
PDB header:transport protein
Chain: C: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of staphylococcus capitis divalent metal ion2 transporter (dmt) in complex with nanobody
14c4wgwA_
98.4 11
PDB header:transport protein
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: staphylococcus capitis divalent metal ion transporter (dmt) in complex2 with manganese
15c4us3A_
98.4 13
PDB header:transport protein
Chain: A: PDB Molecule:transporter;
PDBTitle: crystal structure of the bacterial nss member mhst in an2 occluded inward-facing state
16c4djiA_
98.1 11
PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
17c6nplA_
98.1 9
PDB header:membrane protein
Chain: A: PDB Molecule:solute carrier family 12 (sodium/potassium/chloride
PDBTitle: cryo-em structure of nkcc1
18c3giaA_
98.0 10
PDB header:transport protein
Chain: A: PDB Molecule:uncharacterized protein mj0609;
PDBTitle: crystal structure of apct transporter
19c6irtB_
97.9 11
PDB header:membrane protein
Chain: B: PDB Molecule:large neutral amino acids transporter small subunit 1;
PDBTitle: human lat1-4f2hc complex bound with bch
20c6f2wA_
97.8 13
PDB header:transport protein
Chain: A: PDB Molecule:putative amino acid/polyamine transport protein;
PDBTitle: bacterial asc transporter crystal structure in open to in conformation
21c6jmqA_
not modelled 95.3 12
PDB header:membrane protein/immune system
Chain: A: PDB Molecule:large neutral amino acids transporter small subunit 1;
PDBTitle: lat1-cd98hc complex bound to mem-108 fab
22c5kteA_
not modelled 94.4 14
PDB header:transport protein/immune system
Chain: A: PDB Molecule:divalent metal cation transporter mnth;
PDBTitle: crystal structure of deinococcus radiodurans mnth, an nramp-family2 transition metal transporter
23c3lrcC_
not modelled 91.9 13
PDB header:transport protein
Chain: C: PDB Molecule:arginine/agmatine antiporter;
PDBTitle: structure of e. coli adic (p1)
24c5oqtA_
not modelled 88.9 11
PDB header:transport protein
Chain: A: PDB Molecule:amino acid transporter;
PDBTitle: crystal structure of a bacterial cationic amino acid transporter (cat)2 homologue
25c4ylfD_
not modelled 59.3 17
PDB header:oxidoreductase
Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase subunit a;
PDBTitle: insights into flavin-based electron bifurcation via the nadh-dependent2 reduced ferredoxin-nadp oxidoreductase structure
26d1e7la2
not modelled 59.3 22
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:Recombination endonuclease VII, N-terminal domain
27c2kdxA_
not modelled 51.9 19
PDB header:metal-binding protein
Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein
PDBTitle: solution structure of hypa protein
28d2atcb2
not modelled 51.6 33
Fold:Rubredoxin-like
Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
Family:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
29d2dida1
not modelled 50.5 33
Fold:B-box zinc-binding domain
Superfamily:B-box zinc-binding domain
Family:B-box zinc-binding domain
30c6genS_
not modelled 49.6 19
PDB header:nuclear protein
Chain: S: PDB Molecule:vacuolar protein sorting-associated protein 71;
PDBTitle: chromatin remodeller-nucleosome complex at 4.5 a resolution.
31c2csvA_
not modelled 49.3 15
PDB header:signaling protein
Chain: A: PDB Molecule:tripartite motif protein 29;
PDBTitle: solution structure of the zf-b_box type2 domain of human2 tripartite motif protein trim29 isoform alpha
32c3lyrA_
not modelled 49.1 20
PDB header:transcription activator
Chain: A: PDB Molecule:transcription factor coe1;
PDBTitle: human early b-cell factor 1 (ebf1) dna-binding domain
33c3zyqA_
not modelled 48.1 20
PDB header:signaling
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase
PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.48 a3 resolution
34c5lc5I_
not modelled 48.0 26
PDB header:oxidoreductase
Chain: I: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 8,
PDBTitle: structure of mammalian respiratory complex i, class2
35c6qajB_
not modelled 47.3 14
PDB header:nuclear protein
Chain: B: PDB Molecule:endolysin,transcription intermediary factor 1-beta;
PDBTitle: structure of the tripartite motif of kap1/trim28
36d2csva1
not modelled 46.1 18
Fold:B-box zinc-binding domain
Superfamily:B-box zinc-binding domain
Family:B-box zinc-binding domain
37c1freA_
not modelled 46.1 26
PDB header:zinc-binding protein
Chain: A: PDB Molecule:nuclear factor xnf7;
PDBTitle: xnf7 bbox, developmental protein, ph 7.5, 30 c, with zinc,2 nmr, 1 structure
38c2qnfB_
not modelled 44.0 19
PDB header:hydrolase/dna
Chain: B: PDB Molecule:recombination endonuclease vii;
PDBTitle: crystal structure of t4 endonuclease vii h43n mutant in2 complex with heteroduplex dna containing base mismatches
39d1u5ka2
not modelled 44.0 24
Fold:ArfGap/RecO-like zinc finger
Superfamily:ArfGap/RecO-like zinc finger
Family:RecO C-terminal domain-like
40c3goxB_
not modelled 43.7 22
PDB header:hydrolase/dna
Chain: B: PDB Molecule:restriction endonuclease hpy99i;
PDBTitle: crystal structure of the beta-beta-alpha-me type ii restriction2 endonuclease hpy99i in the absence of edta
41d2fzcb2
not modelled 43.3 19
Fold:Rubredoxin-like
Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
Family:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
42c5oqj4_
not modelled 43.2 16
PDB header:transcription
Chain: 4: PDB Molecule:rna polymerase ii transcription factor b subunit 4;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih
43c2jtgA_
not modelled 42.4 14
PDB header:metal binding protein
Chain: A: PDB Molecule:thap domain-containing protein 1;
PDBTitle: solution structure of the thap-zinc finger of thap1
44c2egmA_
not modelled 42.1 22
PDB header:transcription/metal binding protein
Chain: A: PDB Molecule:tripartite motif-containing protein 41;
PDBTitle: solution structure of the zf-b_box domain from human2 tripartite motif protein 41
45c2fugG_
not modelled 41.8 31
PDB header:oxidoreductase
Chain: G: PDB Molecule:nadh-quinone oxidoreductase chain 9;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
46d2fug91
not modelled 41.8 31
Fold:Ferredoxin-like
Superfamily:4Fe-4S ferredoxins
Family:Ferredoxin domains from multidomain proteins
47c2h3eB_
not modelled 41.7 19
PDB header:transferase
Chain: B: PDB Molecule:aspartate carbamoyltransferase regulatory chain;
PDBTitle: structure of wild-type e. coli aspartate transcarbamoylase in the2 presence of n-phosphonacetyl-l-isoasparagine at 2.3a resolution
48c2lv9A_
not modelled 41.1 26
PDB header:transferase
Chain: A: PDB Molecule:histone-lysine n-methyltransferase mll5;
PDBTitle: solution nmr structure of the phd domain of human mll5, northeast2 structural genomics consortium target hr6512a
49c6gcsI_
not modelled 40.5 21
PDB header:oxidoreductase
Chain: I: PDB Molecule:tyky subunit (nuim);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
50c6nmiF_
not modelled 39.2 21
PDB header:transcription
Chain: F: PDB Molecule:general transcription factor iih subunit 3, p34;
PDBTitle: cryo-em structure of the human tfiih core complex
51c2yrgA_
not modelled 39.2 34
PDB header:ligase
Chain: A: PDB Molecule:tripartite motif-containing protein 5;
PDBTitle: solution structure of the b-box domain from tripartite2 motif-containing protein 5
52c3py7A_
not modelled 38.1 7
PDB header:viral protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6
PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution
53c3mlpE_
not modelled 37.5 23
PDB header:transcription/dna
Chain: E: PDB Molecule:transcription factor coe1;
PDBTitle: early b-cell factor 1 (ebf1) bound to dna
54d1t61c1
not modelled 37.4 22
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Noncollagenous (NC1) domain of collagen IV
55c2elvA_
not modelled 37.1 25
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 6th c2h2 zinc finger of human2 zinc finger protein 406
56c3mlpA_
not modelled 36.4 23
PDB header:transcription/dna
Chain: A: PDB Molecule:transcription factor coe1;
PDBTitle: early b-cell factor 1 (ebf1) bound to dna
57d2dlqa3
not modelled 35.7 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
58c2yvrB_
not modelled 35.2 16
PDB header:metal binding protein
Chain: B: PDB Molecule:transcription intermediary factor 1-beta;
PDBTitle: crystal structure of ms1043
59d1li1c1
not modelled 35.1 23
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Noncollagenous (NC1) domain of collagen IV
60d1wewa_
not modelled 33.7 26
Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:PHD domain
61d1pg5b2
not modelled 33.7 11
Fold:Rubredoxin-like
Superfamily:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
Family:Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
62c2difA_
not modelled 32.8 31
PDB header:protein binding
Chain: A: PDB Molecule:tripartite motif protein 39;
PDBTitle: one sequence two fold ? : miss fold of the zf-b-box domain2 from human tripartite motif protein 39
63d2d8ra1
not modelled 32.4 25
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:THAP domain
64c5ieaF_
not modelled 32.0 24
PDB header:ligase
Chain: F: PDB Molecule:tripartite motif-containing protein 5, serine--trna ligase
PDBTitle: trim5 b-box2 and coiled-coil chimera
65d1wema_
not modelled 31.7 26
Fold:FYVE/PHD zinc finger
Superfamily:FYVE/PHD zinc finger
Family:PHD domain
66c2vdcI_
not modelled 31.3 20
PDB header:oxidoreductase
Chain: I: PDB Molecule:glutamate synthase [nadph] small chain;
PDBTitle: the 9.5 a resolution structure of glutamate synthase from cryo-2 electron microscopy and its oligomerization behavior in solution:3 functional implications.
67d2cs3a1
not modelled 31.1 22
Fold:RING/U-box
Superfamily:RING/U-box
Family:Variant RING domain
68c1pg5B_
not modelled 31.0 9
PDB header:transferase
Chain: B: PDB Molecule:aspartate carbamoyltransferase regulatory chain;
PDBTitle: crystal structure of the unligated (t-state) aspartate2 transcarbamoylase from the extremely thermophilic archaeon sulfolobus3 acidocaldarius
69c5jpxA_
not modelled 30.5 25
PDB header:metal binding protein
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase trim21;
PDBTitle: solution structure of the trim21 b-box2 (b2)
70c1z2qA_
not modelled 30.4 14
PDB header:membrane protein
Chain: A: PDB Molecule:lm5-1;
PDBTitle: high-resolution solution structure of the lm5-1 fyve domain2 from leishmania major
71d1ma3a_
not modelled 30.1 16
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
72c5tbnA_
not modelled 30.0 22
PDB header:transcription / structural protein
Chain: A: PDB Molecule:phd finger protein 20;
PDBTitle: solution nmr structure of phf20 phd domain in complex with a histone2 h3k4me2 peptide
73c1u5kA_
not modelled 29.8 24
PDB header:recombination,replication
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: recombinational repair protein reco
74c3kdeC_
not modelled 29.8 18
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:transposable element p transposase;
PDBTitle: crystal structure of the thap domain from d. melanogaster p-element2 transposase in complex with its natural dna binding site
75c2rsdA_
not modelled 29.7 19
PDB header:ligase
Chain: A: PDB Molecule:e3 sumo-protein ligase siz1;
PDBTitle: solution structure of the plant homeodomain (phd) of the e3 sumo2 ligase siz1 from rice
76d2yt9a1
not modelled 29.6 41
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
77c5ikfA_
not modelled 28.8 20
PDB header:transcription
Chain: A: PDB Molecule:chromatin remodeling factor mit1;
PDBTitle: crystal structure of the c-terminal domain of the mit1 nucleosome2 remodeler in complex with clr1
78d1t61a1
not modelled 28.3 18
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Noncollagenous (NC1) domain of collagen IV
79c2n95A_
not modelled 28.2 21
PDB header:metal binding protein
Chain: A: PDB Molecule:protein hit1;
PDBTitle: nmr structure of yeast hit1 protein zinc finger
80c2co8A_
not modelled 28.1 19
PDB header:metal binding protein
Chain: A: PDB Molecule:nedd9 interacting protein with calponin homology
PDBTitle: solution structures of the lim domain of human nedd92 interacting protein with calponin homology and lim domains
81c2yqpA_
not modelled 27.9 23
PDB header:gene regulation, hydrolase
Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx59;
PDBTitle: solution structure of the zf-hit domain in dead (asp-glu-2 ala-asp) box polypeptide 59
82c1a87A_
not modelled 27.1 12
PDB header:bacteriocin
Chain: A: PDB Molecule:colicin n;
PDBTitle: colicin n
83d1a87a_
not modelled 27.1 12
Fold:Toxins' membrane translocation domains
Superfamily:Colicin
Family:Colicin
84c1dvpA_
not modelled 26.7 18
PDB header:transferase
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine
PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction
85c2d8uA_
not modelled 26.5 24
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin ligase trim63;
PDBTitle: solution structure of the b-box domain of the human2 tripartite motif-containing 63 protein
86c2l9zA_
not modelled 26.3 33
PDB header:transcription
Chain: A: PDB Molecule:pr domain zinc finger protein 4;
PDBTitle: zinc knuckle in prdm4
87c3j2wS_
not modelled 26.1 21
PDB header:virus
Chain: S: PDB Molecule:glycoprotein e2;
PDBTitle: electron cryo-microscopy of chikungunya virus
88c6ffyA_
not modelled 25.7 12
PDB header:apoptosis
Chain: A: PDB Molecule:vps10 domain-containing receptor sorcs2;
PDBTitle: structure of the mouse sorcs2-ngf complex
89c5tdwA_
not modelled 25.6 21
PDB header:transcription
Chain: A: PDB Molecule:set domain-containing protein 3;
PDBTitle: set3 phd finger in complex with histone h3k4me3
90c2hjhB_
not modelled 25.4 18
PDB header:hydrolase
Chain: B: PDB Molecule:nad-dependent histone deacetylase sir2;
PDBTitle: crystal structure of the sir2 deacetylase
91c2l0bA_
not modelled 25.1 15
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase praja-1;
PDBTitle: solution nmr structure of zinc finger domain of e3 ubiquitin-protein2 ligase praja-1 from homo sapiens, northeast structural genomics3 consortium (nesg) target hr4710b
92c3g6jB_
not modelled 24.9 10
PDB header:immune system
Chain: B: PDB Molecule:complement c3 alpha chain;
PDBTitle: c3b in complex with a c3b specific fab
93c3mkrB_
not modelled 24.3 11
PDB header:transport protein
Chain: B: PDB Molecule:coatomer subunit alpha;
PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat
94c3q8dB_
not modelled 24.3 7
PDB header:dna binding protein
Chain: B: PDB Molecule:dna repair protein reco;
PDBTitle: e. coli reco complex with ssb c-terminus
95d2adra2
not modelled 24.1 36
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
96c5n7yC_
not modelled 23.9 22
PDB header:transcription
Chain: C: PDB Molecule:anti-sigma-g factor gin;
PDBTitle: solution structure of b. subtilis sigma g inhibitor csfb
97c6btmB_
not modelled 23.7 22
PDB header:membrane protein
Chain: B: PDB Molecule:alternative complex iii subunit b;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
98c2n94A_
not modelled 23.5 24
PDB header:metal binding protein
Chain: A: PDB Molecule:box c/d snorna protein 1;
PDBTitle: nmr structure of yeast bcd1 protein zinc finger
99c3o70A_
not modelled 23.2 29
PDB header:protein binding
Chain: A: PDB Molecule:phd finger protein 13;
PDBTitle: phd-type zinc finger of human phd finger protein 13
100c1t60R_
not modelled 22.9 23
PDB header:structural protein
Chain: R: PDB Molecule:type iv collagen;
PDBTitle: crystal structure of type iv collagen nc1 domain from2 bovine lens capsule
101c4heaO_
not modelled 22.4 30
PDB header:oxidoreductase
Chain: O: PDB Molecule:nadh-quinone oxidoreductase subunit 9;
PDBTitle: crystal structure of the entire respiratory complex i from thermus2 thermophilus
102c6blhG_
not modelled 22.4 26
PDB header:viral protein/immune system
Chain: G: PDB Molecule:major surface glycoprotein g;
PDBTitle: rsv g central conserved region bound to fab cb017.5
103c2l03A_
not modelled 22.3 26
PDB header:neuropeptide
Chain: A: PDB Molecule:ly-6/neurotoxin-like protein 1;
PDBTitle: spatial structure of water-soluble lynx1
104c3zg6A_
not modelled 22.2 27
PDB header:hydrolase/inhibitor
Chain: A: PDB Molecule:nad-dependent protein deacetylase sirtuin-6;
PDBTitle: the novel de-long chain fatty acid function of human sirt6
105c2ecvA_
not modelled 22.2 24
PDB header:ligase
Chain: A: PDB Molecule:tripartite motif-containing protein 5;
PDBTitle: solution structure of the zinc finger, c3hc4 type (ring2 finger) domain of tripartite motif-containing protein 5
106c2ywwA_
not modelled 21.8 21
PDB header:metal binding protein
Chain: A: PDB Molecule:aspartate carbamoyltransferase regulatory chain;
PDBTitle: crystal structure of aspartate carbamoyltransferase2 regulatory chain from methanocaldococcus jannaschii
107c1x4uA_
not modelled 21.7 22
PDB header:lipid binding protein
Chain: A: PDB Molecule:zinc finger, fyve domain containing 27 isoform b;
PDBTitle: solution structure of the fyve domain from human fyve2 domain containing 27 isoform b protein
108d1znfa_
not modelled 21.5 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
109c1znfA_
not modelled 21.5 33
PDB header:zinc finger dna binding domain
Chain: A: PDB Molecule:31st zinc finger from xfin;
PDBTitle: three-dimensional solution structure of a single zinc finger dna-2 binding domain
110c3wsxA_
not modelled 21.5 18
PDB header:protein binding
Chain: A: PDB Molecule:sortilin-related receptor;
PDBTitle: sorla vps10p domain in ligand-free form
111c6bliF_
not modelled 21.2 24
PDB header:viral protein/immune system
Chain: F: PDB Molecule:major surface glycoprotein g;
PDBTitle: rsv g peptide bound to fab cb002.5
112d1yc5a1
not modelled 21.2 18
Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
113d1r5ya_
not modelled 21.1 17
Fold:TIM beta/alpha-barrel
Superfamily:tRNA-guanine transglycosylase
Family:tRNA-guanine transglycosylase
114c6bliI_
not modelled 21.1 24
PDB header:viral protein/immune system
Chain: I: PDB Molecule:major surface glycoprotein g;
PDBTitle: rsv g peptide bound to fab cb002.5
115c2junA_
not modelled 21.0 20
PDB header:ligase
Chain: A: PDB Molecule:midline-1;
PDBTitle: structure of the mid1 tandem b-boxes reveals an interaction2 reminiscent of intermolecular ring heterodimers
116c3a44D_
not modelled 20.9 33
PDB header:metal binding protein
Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa;
PDBTitle: crystal structure of hypa in the dimeric form
117c2k17A_
not modelled 20.5 28
PDB header:transcription
Chain: A: PDB Molecule:transcription initiation factor tfiid subunit 3;
PDBTitle: solution structure of the taf3 phd domain in complex with a2 h3k4me3 peptide
118c4qf3A_
not modelled 20.5 22
PDB header:transcription
Chain: A: PDB Molecule:bromodomain adjacent to zinc finger domain protein 2b;
PDBTitle: crystal structure of human baz2b phd zinc finger in the free form
119c6o9lQ_
not modelled 20.4 25
PDB header:transcription/dna
Chain: Q: PDB Molecule:general transcription factor iie subunit 1;
PDBTitle: human holo-pic in the closed state
120d1paaa_
not modelled 20.4 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below