Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3455c_(truA)_3876231_3877001
DateFri Aug 9 18:20:13 BST 2019
Unique Job ID0986eb7ec385badc
SequenceVGQRTVAGDL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:47.026 Y:46.276 Z:57.885
Model (left) based on template d1dj0a_
Top template information
Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase I TruA
Confidence and coverage
Confidence:100.0% Coverage: 89%
228 residues ( 89% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1dj0a_



100.0 35
Fold:Pseudouridine synthase
Superfamily:Pseudouridine synthase
Family:Pseudouridine synthase I TruA
2c1vs3B_



100.0 35
PDB header:isomerase
Chain: B: PDB Molecule:trna pseudouridine synthase a;
PDBTitle: crystal structure of the trna pseudouridine synthase trua from thermus2 thermophilus hb8
3c4j37A_



100.0 24
PDB header:rna binding protein
Chain: A: PDB Molecule:trna pseudouridine synthase a, mitochondrial;
PDBTitle: crystal structure of the catalytic domain of human pus1
4c2v9kA_



91.7 14
PDB header:lyase
Chain: A: PDB Molecule:uncharacterized protein flj32312;
PDBTitle: crystal structure of human pus10, a novel pseudouridine2 synthase.
5c1qysA_



50.6 22
PDB header:de novo protein
Chain: A: PDB Molecule:top7;
PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold
6d2hh8a1



49.9 23
Fold:YdfO-like
Superfamily:YdfO-like
Family:YdfO-like
7c2jvfA_



45.4 19
PDB header:de novo protein
Chain: A: PDB Molecule:de novo protein m7;
PDBTitle: solution structure of m7, a computationally-designed2 artificial protein
8c6aefB_



28.2 23
PDB header:transferase
Chain: B: PDB Molecule:polyketide synthase associated protein papa2;
PDBTitle: papa2 acyl transferase
9d1q9ja1



26.3 23
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
10d1l5aa1



21.5 15
Fold:CoA-dependent acyltransferases
Superfamily:CoA-dependent acyltransferases
Family:NRPS condensation domain (amide synthase)
11c6gnyA_



18.4 11
PDB header:structural protein
Chain: A: PDB Molecule:membrane-anchored junction protein;
PDBTitle: crystal structure of the majin-terb2 heterotetrameric complex
12d1e88a3



17.8 40
Fold:FnI-like domain
Superfamily:FnI-like domain
Family:Fibronectin type I module
13c2xhgA_



17.3 12
PDB header:isomerase
Chain: A: PDB Molecule:tyrocidine synthetase a;
PDBTitle: crystal structure of the epimerization domain from the initiation2 module of tyrocidine biosynthesis
14c6ad3A_



16.9 12
PDB header:biosynthetic protein
Chain: A: PDB Molecule:lovastatin nonaketide synthase moka;
PDBTitle: structural characterization of the condensation domain from monacolin2 k polyketide synthase moka
15c1l5aA_



16.3 15
PDB header:biosynthetic protein
Chain: A: PDB Molecule:amide synthase;
PDBTitle: crystal structure of vibh, an nrps condensation enzyme
16c6d0tA_



14.6 20
PDB header:de novo protein
Chain: A: PDB Molecule:bb1;
PDBTitle: de novo design of a fluorescence-activating beta barrel - bb1
17c4tx3B_



11.6 31
PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide synthetase, module 7;
PDBTitle: complex of the x-domain and oxyb from teicoplanin biosynthesis
18c5t3eA_



11.5 15
PDB header:ligase
Chain: A: PDB Molecule:bacillamide synthetase heterocyclization domain;
PDBTitle: crystal structure of a nonribosomal peptide synthetase2 heterocyclization domain.
19c5m6pB_



11.3 12
PDB header:isomerase
Chain: B: PDB Molecule:tyrocidine synthase 2;
PDBTitle: crystal structure of the epimerization domain from module 3 of2 tyrocidine synthetase b, tycb3(e)
20c3pstA_



11.1 12
PDB header:nuclear protein
Chain: A: PDB Molecule:protein doa1;
PDBTitle: crystal structure of pul and pfu(mutate) domain
21c2kruA_



not modelled 11.0 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:light-independent protochlorophyllide reductase subunit b;
PDBTitle: solution nmr structure of the pcp_red domain of light-independent2 protochlorophyllide reductase subunit b from chlorobium tepidum.3 northeast structural genomics consortium target ctr69a
22c4znmB_



not modelled 10.6 15
PDB header:ligase
Chain: B: PDB Molecule:c-domain type ii peptide synthetase;
PDBTitle: crystal structure of sgcc5 protein from streptomyces globisporus (apo2 form)
23c6m7lB_



not modelled 9.7 31
PDB header:biosynthetic protein
Chain: B: PDB Molecule:putative non-ribosomal peptide synthetase;
PDBTitle: complex of oxya with the x-domain from gpa biosynthesis
24c4jn3B_



not modelled 9.6 15
PDB header:biosynthetic protein
Chain: B: PDB Molecule:cda peptide synthetase i;
PDBTitle: crystal structures of the first condensation domain of the cda2 synthetase
25c4u5hC_



not modelled 9.5 30
PDB header:toxin
Chain: C: PDB Molecule:con-ikot-ikot;
PDBTitle: crystal structure of con-ikot-ikot toxin
26c1unyA_



not modelled 9.0 13
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles
27c4ky3A_



not modelled 8.4 19
PDB header:de novo protein
Chain: A: PDB Molecule:designed protein or327;
PDBTitle: three-dimensional structure of the orthorhombic crystal of2 computationally designed insertion domain , northeast structural3 genomics consortium (nesg) target or327
28d1gr0a2



not modelled 8.1 18
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
29c1u9hB_



not modelled 7.7 13
PDB header:transcription
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: heterocyclic peptide backbone modification in gcn4-pli based coiled2 coils: replacement of e(22)l(23)
30c5t81A_



not modelled 7.5 27
PDB header:biosynthetic protein
Chain: A: PDB Molecule:epob;
PDBTitle: rhombohedral crystal form of the epob nrps cyclization-docking2 bidomain from sorangium cellulosum
31c5ja2A_



not modelled 7.1 12
PDB header:ligase
Chain: A: PDB Molecule:enterobactin synthase component f;
PDBTitle: entf, a terminal nonribosomal peptide synthetase module bound to the2 non-native mbth-like protein pa2412
32c1q9jA_



not modelled 7.0 23
PDB header:ligase
Chain: A: PDB Molecule:polyketide synthase associated protein 5;
PDBTitle: structure of polyketide synthase associated protein 5 from2 mycobacterium tuberculosis
33c2omlA_



not modelled 6.9 18
PDB header:isomerase
Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase e;
PDBTitle: crystal structure of e. coli pseudouridine synthase rlue
34c1unzA_



not modelled 6.9 13
PDB header:four helix bundle
Chain: A: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles
35c1unzB_



not modelled 6.9 13
PDB header:four helix bundle
Chain: B: PDB Molecule:general control protein gcn4;
PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles
36c3qteA_



not modelled 6.7 31
PDB header:antimicrobial protein
Chain: A: PDB Molecule:defensin-6;
PDBTitle: crystal structure of human alpha-defensin 6 (h27w mutant)
37c6ozvA_



not modelled 6.5 31
PDB header:biosynthetic protein
Chain: A: PDB Molecule:txo1;
PDBTitle: the structure of condensation and adenylation domains of teixobactin-2 producing nonribosomal peptide synthetase txo1 serine module in3 complex with amp
38c4xz7A_



not modelled 6.4 25
PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a tgase
39c1e88A_



not modelled 6.4 40
PDB header:cell adhesion
Chain: A: PDB Molecule:fibronectin;
PDBTitle: solution structure of 6f11f22f2, a compact three-module fragment of2 the gelatin-binding domain of human fibronectin
40c2l09A_



not modelled 6.2 6
PDB header:oxidoreductase
Chain: A: PDB Molecule:asr4154 protein;
PDBTitle: solution nmr structure of protein asr4154 from nostoc sp. pcc71202 northeast structural genomics consortium target id nsr143
41c1zmqB_



not modelled 6.0 31
PDB header:antimicrobial protein
Chain: B: PDB Molecule:defensin 6;
PDBTitle: crystal structure of human alpha-defensin-6
42c3l3fX_



not modelled 6.0 12
PDB header:protein binding
Chain: X: PDB Molecule:protein doa1;
PDBTitle: crystal structure of a pfu-pul domain pair of saccharomyces cerevisiae2 doa1/ufd3
43c2mpnA_



not modelled 5.9 25
PDB header:membrane protein
Chain: A: PDB Molecule:inner membrane protein ygap;
PDBTitle: 3d nmr structure of the transmembrane domain of the full-length inner2 membrane protein ygap from escherichia coli
44c2mpnB_



not modelled 5.9 25
PDB header:membrane protein
Chain: B: PDB Molecule:inner membrane protein ygap;
PDBTitle: 3d nmr structure of the transmembrane domain of the full-length inner2 membrane protein ygap from escherichia coli
45c2olwB_



not modelled 5.8 18
PDB header:isomerase
Chain: B: PDB Molecule:ribosomal large subunit pseudouridine synthase e;
PDBTitle: crystal structure of e. coli pseudouridine synthase rlue
46c4hvmC_



not modelled 5.6 16
PDB header:biosynthetic protein
Chain: C: PDB Molecule:tlmii;
PDBTitle: crystal structure of tallysomycin biosynthesis protein tlmii
47c2cooA_



not modelled 5.3 14
PDB header:transferase
Chain: A: PDB Molecule:lipoamide acyltransferase component of branched-
PDBTitle: solution structure of the e3_binding domain of2 dihydrolipoamide branched chaintransacylase
48c2wwaJ_



not modelled 5.2 19
PDB header:ribosome
Chain: J: PDB Molecule:60s ribosomal protein l19;
PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the yeast 80s2 ribosome
49c2jgpA_



not modelled 5.2 15
PDB header:ligase
Chain: A: PDB Molecule:tyrocidine synthetase 3;
PDBTitle: structure of the tycc5-6 pcp-c bidomain of the tyrocidine synthetase2 tycc
50d2csha2



not modelled 5.1 22
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite