Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3456c_(rplQ)_3877069_3877611
DateFri Aug 9 18:20:13 BST 2019
Unique Job IDd2e82a47065ee9d9
SequenceMPKPTKGPRL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:36.363 Y:50.843 Z:30.711
Model (left) based on template c5o60O_
Top template information
PDB header:ribosome
Chain: O: PDB Molecule:50s ribosomal protein l17;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 66%
118 residues ( 66% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5o60O_
100.0 92
PDB header:ribosome
Chain: O: PDB Molecule:50s ribosomal protein l17;
PDBTitle: structure of the 50s large ribosomal subunit from mycobacterium2 smegmatis
2c1vw4L_
100.0 30
PDB header:ribosome
Chain: L: PDB Molecule:54s ribosomal protein l8, mitochondrial;
PDBTitle: structure of the yeast mitochondrial large ribosomal subunit
3d2qamn1
100.0 49
Fold:Prokaryotic ribosomal protein L17
Superfamily:Prokaryotic ribosomal protein L17
Family:Prokaryotic ribosomal protein L17
4c4v19R_
100.0 37
PDB header:ribosome
Chain: R: PDB Molecule:mitoribosomal protein bl17m, mrpl17;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
5c3bboP_
100.0 50
PDB header:ribosome
Chain: P: PDB Molecule:ribosomal protein l17;
PDBTitle: homology model for the spinach chloroplast 50s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome
6d2zjrk1
100.0 47
Fold:Prokaryotic ribosomal protein L17
Superfamily:Prokaryotic ribosomal protein L17
Family:Prokaryotic ribosomal protein L17
7c3j3vN_
100.0 46
PDB header:ribosome
Chain: N: PDB Molecule:50s ribosomal protein l17;
PDBTitle: atomic model of the immature 50s subunit from bacillus subtilis (state2 i-a)
8d1gd8a_
100.0 54
Fold:Prokaryotic ribosomal protein L17
Superfamily:Prokaryotic ribosomal protein L17
Family:Prokaryotic ribosomal protein L17
9d2cqma1
100.0 40
Fold:Prokaryotic ribosomal protein L17
Superfamily:Prokaryotic ribosomal protein L17
Family:Prokaryotic ribosomal protein L17
10c5vn4A_
36.5 13
PDB header:transferase
Chain: A: PDB Molecule:adenine phosphoribosyltransferase, putative;
PDBTitle: crystal structure of adenine phosphoribosyl transferase from2 trypanosoma brucei in complex with amp, pyrophosphate, and ribose-5-3 phosphate
11c3w6kC_
35.8 11
PDB header:cell cycle
Chain: C: PDB Molecule:scpb;
PDBTitle: crystal structure of dimer of scpb n-terminal domain complexed with2 scpa peptide
12c3w6jC_
33.8 11
PDB header:cell cycle
Chain: C: PDB Molecule:scpb;
PDBTitle: crystal structure of scpab core complex
13c5yhhA_
33.5 22
PDB header:oxidoreductase
Chain: A: PDB Molecule:uncharacterized conserved protein yiim;
PDBTitle: crystal structure of yiim from geobacillus stearothermophilus
14c3h0dB_
24.6 50
PDB header:transcription/dna
Chain: B: PDB Molecule:ctsr;
PDBTitle: crystal structure of ctsr in complex with a 26bp dna duplex
15c2z99A_
21.1 13
PDB header:cell cycle
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of scpb from mycobacterium tuberculosis
16d1o65a_
20.3 16
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:MOSC (MOCO sulphurase C-terminal) domain
17d1xd7a_
16.5 11
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Transcriptional regulator Rrf2
18c3kowH_
14.8 22
PDB header:metal binding protein
Chain: H: PDB Molecule:d-ornithine aminomutase s component;
PDBTitle: crystal structure of ornithine 4,5 aminomutase backsoaked complex
19c5he9E_
14.1 33
PDB header:protein binding
Chain: E: PDB Molecule:phage inhibitor protein;
PDBTitle: bacterial initiation protein in complex with phage inhibitor protein
20c2ic6B_
13.4 21
PDB header:viral protein
Chain: B: PDB Molecule:nucleocapsid protein;
PDBTitle: the coiled-coil domain (residues 1-75) structure of the sin nombre2 virus nucleocapsid protein
21c5wlbF_
not modelled 11.5 71
PDB header:protein binding
Chain: F: PDB Molecule:225-15 b;
PDBTitle: kras g12v, bound to gppnhp and miniprotein 225-15a/b
22d1v66a_
not modelled 11.3 23
Fold:LEM/SAP HeH motif
Superfamily:SAP domain
Family:SAP domain
23c2op8A_
not modelled 11.2 10
PDB header:isomerase
Chain: A: PDB Molecule:probable tautomerase ywhb;
PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase
24c5tv6A_
not modelled 10.7 19
PDB header:ligase
Chain: A: PDB Molecule:6-carboxyhexanoate--coa ligase;
PDBTitle: a. aeolicus biow with pimelate
25c1x4qA_
not modelled 10.4 29
PDB header:rna binding protein
Chain: A: PDB Molecule:u4/u6 small nuclear ribonucleoprotein prp3;
PDBTitle: solution structure of pwi domain in u4/u6 small nuclear2 ribonucleoprotein prp3(hprp3)
26d1t6sa1
not modelled 10.1 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:ScpB/YpuH-like
27c5wlbC_
not modelled 9.5 71
PDB header:protein binding
Chain: C: PDB Molecule:225-15 b;
PDBTitle: kras g12v, bound to gppnhp and miniprotein 225-15a/b
28c4fipG_
not modelled 9.0 55
PDB header:hydrolase
Chain: G: PDB Molecule:saga-associated factor 11;
PDBTitle: structure of the saga ubp8(s144n)/sgf11(1-72, delta-znf)/sus1/sgf732 dub module
29c4dtfA_
not modelled 8.5 24
PDB header:toxin
Chain: A: PDB Molecule:vgrg protein;
PDBTitle: structure of a vgrg vibrio cholerae toxin acd domain in complex with2 amp-pnp and mg++
30c2wb1J_
not modelled 8.3 25
PDB header:transcription
Chain: J: PDB Molecule:dna-directed rna polymerase rpo13 subunit;
PDBTitle: the complete structure of the archaeal 13-subunit dna-2 directed rna polymerase
31c1pqrA_
not modelled 7.7 44
PDB header:toxin
Chain: A: PDB Molecule:alpha-a-conotoxin eiva;
PDBTitle: solution conformation of alphaa-conotoxin eiva
32d1otfa_
not modelled 7.3 5
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
33c2llrA_
not modelled 7.0 45
PDB header:antimicrobial protein
Chain: A: PDB Molecule:alvinellacin;
PDBTitle: nmr structure of alvinellacin
34c4i0wA_
not modelled 7.0 10
PDB header:hydrolase
Chain: A: PDB Molecule:protease cspb;
PDBTitle: structure of the clostridium perfringens cspb protease
35c3ry0A_
not modelled 6.9 24
PDB header:isomerase
Chain: A: PDB Molecule:putative tautomerase;
PDBTitle: crystal structure of tomn, a 4-oxalocrotonate tautomerase homologue in2 tomaymycin biosynthetic pathway
36c2bnlE_
not modelled 6.8 7
PDB header:stress-response
Chain: E: PDB Molecule:modulator protein rsbr;
PDBTitle: the structure of the n-terminal domain of rsbr
37c4acrA_
not modelled 6.3 9
PDB header:membrane protein
Chain: A: PDB Molecule:glypican-1;
PDBTitle: crystal structure of n-glycosylated, c-terminally truncated human2 glypican-1
38d1qb7a_
not modelled 6.3 13
Fold:PRTase-like
Superfamily:PRTase-like
Family:Phosphoribosyltransferases (PRTases)
39c2cqjA_
not modelled 6.3 21
PDB header:rna binding protein
Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein
PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog
40c4fdxB_
not modelled 6.2 10
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonase tautomerase isozyme;
PDBTitle: kinetic and structural characterization of the 4-oxalocrotonate2 tautomerase isozymes from methylibium petroleiphilum
41d1bjpa_
not modelled 6.1 10
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:4-oxalocrotonate tautomerase-like
42c4if2A_
not modelled 6.1 26
PDB header:hydrolase
Chain: A: PDB Molecule:phosphotriesterase homology protein;
PDBTitle: structure of the phosphotriesterase from mycobacterium tuberculosis
43c2x4kB_
not modelled 5.8 14
PDB header:isomerase
Chain: B: PDB Molecule:4-oxalocrotonate tautomerase;
PDBTitle: crystal structure of sar1376, a putative 4-oxalocrotonate2 tautomerase from the methicillin-resistant staphylococcus3 aureus (mrsa)
44c5x5wC_
not modelled 5.6 27
PDB header:viral protein/cell adhesion
Chain: C: PDB Molecule:gd;
PDBTitle: crystal structure of pseudorabies virus glycoprotein d
45c3mkoA_
not modelled 5.6 9
PDB header:viral protein
Chain: A: PDB Molecule:glycoprotein c;
PDBTitle: crystal structure of the lymphocytic choriomeningitis virus membrane2 fusion glycoprotein gp2 in its postfusion conformation
46c5wd9A_
not modelled 5.6 21
PDB header:protein binding
Chain: A: PDB Molecule:lem22;
PDBTitle: crystal structure of legionella pneumophila effector lpg2328
47d2incb1
not modelled 5.5 15
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
48c6nd4K_
not modelled 5.4 20
PDB header:ribosome
Chain: K: PDB Molecule:utp9;
PDBTitle: conformational switches control early maturation of the eukaryotic2 small ribosomal subunit
49d1ht6a1
not modelled 5.3 17
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
50c2d3o1_
not modelled 5.2 54
PDB header:ribosome
Chain: 1: PDB Molecule:trigger factor;
PDBTitle: structure of ribosome binding domain of the trigger factor on the 50s2 ribosomal subunit from d. radiodurans
51c3kmiB_
not modelled 5.1 10
PDB header:membrane protein
Chain: B: PDB Molecule:putative membrane protein cog4129;
PDBTitle: crystal structure of putative membrane protein from clostridium2 difficile 630
52c3dhgB_
not modelled 5.1 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:toluene 4-monooxygenase hydroxylase beta subunit;
PDBTitle: crystal structure of toluene 4-monoxygenase hydroxylase

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