Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3466_(-)_3883704_3884372
DateFri Aug 9 18:20:14 BST 2019
Unique Job IDe89252034132b509
SequenceMGSGSRERIV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:23.731 Y:60.937 Z:22.415
Model (left) based on template c2hv8D_
Top template information
PDB header:protein transport
Chain: D: PDB Molecule:rab11 family-interacting protein 3;
PDBTitle: crystal structure of gtp-bound rab11 in complex with fip3
Confidence and coverage
Confidence: 22.5% Coverage: 19%
43 residues ( 19% of your sequence) have been modelled with 22.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2hv8D_
22.5 12
PDB header:protein transport
Chain: D: PDB Molecule:rab11 family-interacting protein 3;
PDBTitle: crystal structure of gtp-bound rab11 in complex with fip3
2c5tw9D_
20.2 27
PDB header:lipid-binding protein
Chain: D: PDB Molecule:iron uptake system component efeo;
PDBTitle: 1.50 angstrom crystal structure of c-terminal fragment (residues 322-2 384) of iron uptake system component efeo from yersinia pestis.
3c3frwF_
19.7 15
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:putative trp repressor protein;
PDBTitle: crystal structure of putative trpr protein from ruminococcus obeum
4c3c4rC_
19.3 20
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein encoded by2 cryptic prophage
5c1i1gA_
16.6 14
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lrpa;
PDBTitle: crystal structure of the lrp-like transcriptional regulator from the2 archaeon pyrococcus furiosus
6c3at7B_
16.4 18
PDB header:structural protein
Chain: B: PDB Molecule:alginate-binding flagellin;
PDBTitle: crystal structure of bacterial cell-surface alginate-binding protein2 algp7
7c4bgoA_
15.3 14
PDB header:hydrolase
Chain: A: PDB Molecule:efem m75 peptidase;
PDBTitle: structural and functional role of the imelysin-like protein2 efem from pseudomonas syringae pv. syringae and3 implications in bacterial iron transport
8c2e1cA_
15.1 14
PDB header:transcription/dna
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph1519;
PDBTitle: structure of putative hth-type transcriptional regulator ph1519/dna2 complex
9c5o8kB_
13.4 38
PDB header:replication
Chain: B: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: crystal structure of mammalian rev7 in complex with rev3 1875-1895
10c2dbbA_
12.6 27
PDB header:transcriptional regulator
Chain: A: PDB Molecule:putative hth-type transcriptional regulator ph0061;
PDBTitle: crystal structure of ph0061
11c4fjoD_
12.1 46
PDB header:transferase/dna binding protein
Chain: D: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: structure of the rev1 ctd-rev3/7-pol kappa rir complex
12c3abdY_
12.0 38
PDB header:cell cycle/replication
Chain: Y: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: structure of human rev7 in complex with a human rev3 fragment in a2 monoclinic crystal
13c3abdX_
12.0 38
PDB header:cell cycle/replication
Chain: X: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: structure of human rev7 in complex with a human rev3 fragment in a2 monoclinic crystal
14c2cfxD_
11.8 14
PDB header:transcription
Chain: D: PDB Molecule:hth-type transcriptional regulator lrpc;
PDBTitle: structure of b.subtilis lrpc
15c6gymW_
11.1 18
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha,
PDBTitle: structure of a yeast closed complex with distorted dna (ccdist)
16c5oqjW_
11.1 18
PDB header:transcription
Chain: W: PDB Molecule:transcription initiation factor iie subunit alpha;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih
17c2kq5A_
11.1 14
PDB header:unknown function
Chain: A: PDB Molecule:avirulence protein;
PDBTitle: solution nmr structure of a section of the repeat domain of the type2 iii effector protein ptha
18c5oqmW_
11.0 18
PDB header:transcription
Chain: W: PDB Molecule:transcription factor tfiie subunit;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih and2 core mediator
19c3korD_
9.9 14
PDB header:transcription
Chain: D: PDB Molecule:possible trp repressor;
PDBTitle: crystal structure of a putative trp repressor from staphylococcus2 aureus
20c3abeZ_
8.5 38
PDB header:cell cycle/replication
Chain: Z: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: structure of human rev7 in complex with a human rev3 fragment in a2 tetragonal crystal
21c3nufB_
not modelled 7.4 25
PDB header:transcription regulator
Chain: B: PDB Molecule:prd-containing transcription regulator;
PDBTitle: crystal structure of a prd-containing transcription regulator2 (lsei_2718) from lactobacillus casei atcc 334 at 1.38 a resolution
22c4czdD_
not modelled 7.4 14
PDB header:lyase
Chain: D: PDB Molecule:putative transcriptional regulator, asnc family;
PDBTitle: sirohaem decarboxylase ahba/b - an enzyme with structural homology2 to the lrp/asnc transcription factor family that is part of the3 alternative haem biosynthesis pathway.
23d2imja1
not modelled 6.8 20
Fold:Cystatin-like
Superfamily:NTF2-like
Family:PFL3262-like
24c4extB_
not modelled 6.2 38
PDB header:transferase/transcription
Chain: B: PDB Molecule:peptide from dna polymerase zeta catalytic subunit;
PDBTitle: structure of polymerase-interacting domain of human rev1 in complex2 with translesional synthesis polymerase zeta
25c1y6iA_
not modelled 6.1 42
PDB header:ligand binding protein
Chain: A: PDB Molecule:mg-chelatase cofactor gun4;
PDBTitle: synechocystis gun4
26d1rcwa_
not modelled 6.1 13
Fold:Heme oxygenase-like
Superfamily:Heme oxygenase-like
Family:PqqC-like
27c2rghA_
not modelled 5.7 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:alpha-glycerophosphate oxidase;
PDBTitle: structure of alpha-glycerophosphate oxidase from2 streptococcus sp.: a template for the mitochondrial alpha-3 glycerophosphate dehydrogenase
28c3iwkB_
not modelled 5.7 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:aminoaldehyde dehydrogenase;
PDBTitle: crystal structure of aminoaldehyde dehydrogenase 1 from pisum sativum2 (psamadh1)
29c4czdA_
not modelled 5.6 14
PDB header:lyase
Chain: A: PDB Molecule:putative transcriptional regulator, asnc family;
PDBTitle: sirohaem decarboxylase ahba/b - an enzyme with structural homology2 to the lrp/asnc transcription factor family that is part of the3 alternative haem biosynthesis pathway.
30c2ldjA_
not modelled 5.2 50
PDB header:de novo protein
Chain: A: PDB Molecule:trp-cage mini-protein;
PDBTitle: 1h chemical shift assignments and structure of trp-cage mini-protein2 with d-amino acid
31c4gk5C_
not modelled 5.1 36
PDB header:transferase
Chain: C: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: crystal structure of human rev3-rev7-rev1-polkappa complex
32c4gk0C_
not modelled 5.1 36
PDB header:transferase
Chain: C: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: crystal structure of human rev3-rev7-rev1 complex
33c4gk0D_
not modelled 5.1 36
PDB header:transferase
Chain: D: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: crystal structure of human rev3-rev7-rev1 complex

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