Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3467_(-)_3884143_3885096
DateFri Aug 9 18:20:14 BST 2019
Unique Job ID8c59d718e5959d77
SequenceVSTRQAAEAD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:30.514 Y:29.208 Z:33.855
Model (left) based on template c2qgpA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium target3 gmr87.
Confidence and coverage
Confidence: 99.2% Coverage: 21%
67 residues ( 21% of your sequence) have been modelled with 99.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2qgpA_



99.2 13
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium target3 gmr87.
2c6ghcA_



99.0 17
PDB header:hydrolase
Chain: A: PDB Molecule:5-methylcytosine-specific restriction enzyme a;
PDBTitle: modification dependent ecokmcra restriction endonuclease
3c5mkwA_



98.8 15
PDB header:hydrolase
Chain: A: PDB Molecule:dna annealing helicase and endonuclease zranb3;
PDBTitle: crystal structure of the human zranb3 hnh domain
4c5x1hS_



98.8 14
PDB header:protein transport
Chain: S: PDB Molecule:icmj (dotn);
PDBTitle: structure of legionella pneumophila dotn
5c5h0mA_



98.3 18
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease;
PDBTitle: crystal structure of deep-sea thermophilic bacteriophage gve2 hnh2 endonuclease with zinc ion
6c5zmmD_



98.2 21
PDB header:dna binding protein
Chain: D: PDB Molecule:uncharacterized protein mcra;
PDBTitle: structure of the type iv phosphorothioation-dependent restriction2 endonuclease scomcra
7c5vgbA_



98.0 17
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of nmecas9 hnh domain bound to anti-crispr acriic1
8c4ogeA_



97.2 19
PDB header:hydrolase
Chain: A: PDB Molecule:hnh endonuclease domain protein;
PDBTitle: crystal structure of the type ii-c cas9 enzyme from actinomyces2 naeslundii
9c5axwA_



96.5 13
PDB header:hydrolase/rna/dna
Chain: A: PDB Molecule:crispr-associated endonuclease cas9;
PDBTitle: crystal structure of staphylococcus aureus cas9 in complex with sgrna2 and target dna (ttgggt pam)
10c6ghsA_



95.6 13
PDB header:hydrolase
Chain: A: PDB Molecule:tagi restriction endonuclease;
PDBTitle: modification dependent tagi restriction endonuclease
11d2gykb1



87.0 15
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
12c4cmqB_



84.1 15
PDB header:hydrolase
Chain: B: PDB Molecule:crispr-associated endonuclease cas9/csn1;
PDBTitle: crystal structure of mn-bound s.pyogenes cas9
13d2jb0b1



74.4 19
Fold:His-Me finger endonucleases
Superfamily:His-Me finger endonucleases
Family:HNH-motif
14c5g2xC_



70.0 22
PDB header:transferase
Chain: C: PDB Molecule:group ii intron-encoded protein ltra;
PDBTitle: structure a of group ii intron complexed with its reverse2 transcriptase
15c4qkoH_



51.8 16
PDB header:antimicrobial protein
Chain: H: PDB Molecule:pyocin-s2;
PDBTitle: the crystal structure of the pyocin s2 nuclease domain, immunity2 protein complex at 1.8 angstroms
16c3plwA_



47.6 20
PDB header:hydrolase
Chain: A: PDB Molecule:recombination enhancement function protein;
PDBTitle: ref protein from p1 bacteriophage
17c4uhpA_



46.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:large component of pyocin ap41;
PDBTitle: crystal structure of the pyocin ap41 dnase-immunity complex
18c5ew5C_



45.1 9
PDB header:hydrolase
Chain: C: PDB Molecule:colicin-e9;
PDBTitle: crystal structure of colicin e9 in complex with its immunity protein2 im9
19c7ceiB_



44.9 13
PDB header:immune system
Chain: B: PDB Molecule:protein (colicin e7 immunity protein);
PDBTitle: the endonuclease domain of colicin e7 in complex with its inhibitor2 im7 protein
20d2dlka1



34.6 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
21c2b8tA_



not modelled 29.5 16
PDB header:transferase
Chain: A: PDB Molecule:thymidine kinase;
PDBTitle: crystal structure of thymidine kinase from u.urealyticum in complex2 with thymidine
22d1w6ga1



not modelled 28.1 16
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
23d2glia4



not modelled 26.7 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
24d1zfda_



not modelled 23.6 36
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
25c1va1A_



not modelled 23.6 38
PDB header:transcription
Chain: A: PDB Molecule:transcription factor sp1;
PDBTitle: solution structure of transcription factor sp1 dna binding2 domain (zinc finger 1)
26d1a1ia1



not modelled 22.4 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
27d1w2za1



not modelled 21.4 9
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
28d1a1ga1



not modelled 21.4 29
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
29c3cwbQ_



not modelled 21.0 12
PDB header:oxidoreductase
Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein;
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
30c2pncB_



not modelled 20.0 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:copper amine oxidase, liver isozyme;
PDBTitle: crystal structure of bovine plasma copper-containing amine oxidase in2 complex with clonidine
31d1ncsa_



not modelled 19.8 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
32d1a1ha1



not modelled 18.8 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
33c3e2iA_



not modelled 18.4 10
PDB header:transferase
Chain: A: PDB Molecule:thymidine kinase;
PDBTitle: crystal structure of thymidine kinase from s. aureus
34d2ysca1



not modelled 17.6 26
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
35d1u86a1



not modelled 17.6 63
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
36c1orxA_



not modelled 17.5 36
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: solution structure of the acyclic permutant des-(24-28)-2 kalata b1.
37d1d6za1



not modelled 17.3 19
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
38d1bhia_



not modelled 17.0 63
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
39d2b8ta2



not modelled 16.6 8
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Type II thymidine kinase zinc finger
40d2oqea1



not modelled 16.5 9
Fold:Supersandwich
Superfamily:Amine oxidase catalytic domain
Family:Amine oxidase catalytic domain
41c1k48A_



not modelled 16.5 44
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
42d1f2ig1



not modelled 16.4 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
43c1pxeA_



not modelled 16.2 45
PDB header:metal binding protein
Chain: A: PDB Molecule:neural zinc finger transcription factor 1;
PDBTitle: solution structure of a cchhc domain of neural zinc finger2 factor-1
44c1jjzA_



not modelled 16.1 44
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: refined structure and disulfide pairing of the kalata b12 peptide
45c2c10D_



not modelled 16.0 16
PDB header:oxidoreductase
Chain: D: PDB Molecule:membrane copper amine oxidase;
PDBTitle: the structure of a truncated, soluble version of semicarbazide-2 sensitive amine oxidase
46d1tf3a2



not modelled 16.0 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
47d1sp2a_



not modelled 15.9 43
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
48d1ejga_



not modelled 15.9 27
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
49d1ubdc3



not modelled 15.9 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
50c1ui7A_



not modelled 15.7 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:phenylethylamine oxidase;
PDBTitle: site-directed mutagenesis of his433 involved in binding of2 copper ion in arthrobacter globiformis amine oxidase
51d1aaya1



not modelled 15.7 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
52d2glia3



not modelled 15.6 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
53c3higB_



not modelled 15.3 13
PDB header:oxidoreductase
Chain: B: PDB Molecule:amiloride-sensitive amine oxidase;
PDBTitle: crystal structure of human diamine oxidase in complex with the2 inhibitor berenil
54d1pt4a_



not modelled 14.9 44
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
55c2f2iA_



not modelled 14.9 44
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of [p20d,v21k]-kalata b1
56c4ttnA_



not modelled 14.8 44
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [g6a]kalata b1
57d1n1ua_



not modelled 14.8 33
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
58c1n1uA_



not modelled 14.8 33
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: nmr structure of [ala1,15]kalata b1
59c2khbA_



not modelled 14.7 44
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of linear kalata b1 (loop 6)
60c4ttoA_



not modelled 14.7 44
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: quasi-racemic structure of [v25a] kalata b1
61c1d6uB_



not modelled 14.6 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:copper amine oxidase;
PDBTitle: crystal structure of e. coli amine oxidase anaerobically reduced with2 beta-phenylethylamine
62c4ttmA_



not modelled 14.6 44
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: racemic structure of kalata b1 (kb1)
63c2mn1A_



not modelled 14.6 44
PDB header:unknown function
Chain: A: PDB Molecule:kalata b1[w23ww];
PDBTitle: solution structure of kalata b1[w23ww]
64c1ekmC_



not modelled 13.9 9
PDB header:oxidoreductase
Chain: C: PDB Molecule:copper amine oxidase;
PDBTitle: crystal structure at 2.5 a resolution of zinc-substituted2 copper amine oxidase of hansenula polymorpha expressed in3 escherichia coli
65c5yixB_



not modelled 13.8 27
PDB header:dna binding protein
Chain: B: PDB Molecule:cell cycle regulatory protein gcra;
PDBTitle: caulobacter crescentus gcra sigma-interacting domain (sid) in complex2 with domain 2 of sigma 70
66c3pgbA_



not modelled 13.8 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of aspergillus nidulans amine oxidase
67c1nb1A_



not modelled 13.8 44
PDB header:antibiotic
Chain: A: PDB Molecule:kalata b1;
PDBTitle: high resolution solution structure of kalata b1
68d1nb1a_



not modelled 13.8 44
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Cyclotides
Family:Kalata B1
69c3loyB_



not modelled 13.7 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:copper amine oxidase;
PDBTitle: crystal structure of a copper-containing benzylamine oxidase from2 hansenula polymorpha
70d1jmna_



not modelled 13.4 20
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
71c1kalA_



not modelled 13.4 44
PDB header:plant protein
Chain: A: PDB Molecule:kalata b1;
PDBTitle: elucidation of the primary and three-dimensional structure2 of the uterotonic polypeptide kalata b1
72d1zela1



not modelled 13.4 28
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Rv2827c N-terminal domain-like
73d2glia5



not modelled 13.1 57
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
74c2w4rB_



not modelled 13.0 14
PDB header:hydrolase
Chain: B: PDB Molecule:probable atp-dependent rna helicase dhx58;
PDBTitle: crystal structure of the regulatory domain of human lgp2
75d1tf6a1



not modelled 12.7 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
76c3ga3A_



not modelled 12.7 23
PDB header:hydrolase
Chain: A: PDB Molecule:interferon-induced helicase c domain-containing
PDBTitle: crystal structure of the c-terminal domain of human mda5
77c2kukA_



not modelled 12.5 23
PDB header:antiviral protein
Chain: A: PDB Molecule:leaf cyclotide 2;
PDBTitle: solution structure of vhl-2
78c6dhrA_



not modelled 12.5 44
PDB header:plant protein
Chain: A: PDB Molecule:rivi3;
PDBTitle: nmr solution structure of rivi3
79d2ho2a1



not modelled 12.5 26
Fold:WW domain-like
Superfamily:WW domain
Family:WW domain
80c2lurA_



not modelled 12.4 44
PDB header:plant protein
Chain: A: PDB Molecule:kalata;
PDBTitle: nmr solution structure of kb1[ghrw;23-28]
81c2lamA_



not modelled 12.3 33
PDB header:antiviral protein
Chain: A: PDB Molecule:cyclotide cter m;
PDBTitle: three-dimensional structure of the cyclotide cter m
82d1tf3a1



not modelled 12.3 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
83c3nbbC_



not modelled 12.3 9
PDB header:oxidoreductase
Chain: C: PDB Molecule:peroxisomal primary amine oxidase;
PDBTitle: crystal structure of mutant y305f expressed in e. coli in the copper2 amine oxidase from hansenula polymorpha
84d2dlka2



not modelled 12.0 38
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
85c2f2jA_



not modelled 11.8 27
PDB header:antimicrobial protein
Chain: A: PDB Molecule:kalata-b1;
PDBTitle: solution structure of [w19k, p20n, v21k]-kalata b1
86c3e4hA_



not modelled 11.6 33
PDB header:plant protein
Chain: A: PDB Molecule:varv peptide f;
PDBTitle: crystal structure of the cyclotide varv f
87c1zw8A_



not modelled 11.1 38
PDB header:transcription
Chain: A: PDB Molecule:zinc-responsive transcriptional regulator zap1;
PDBTitle: solution structure of a zap1 zinc-responsive domain2 provides insights into metalloregulatory transcriptional3 repression in saccharomyces cerevisiae
88c1zrtD_



not modelled 10.6 16
PDB header:oxidoreductase/metal transport
Chain: D: PDB Molecule:cytochrome c1;
PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound
89c2k7gA_



not modelled 10.4 33
PDB header:plant protein
Chain: A: PDB Molecule:varv peptide f;
PDBTitle: solution structure of varv f
90c2gj0A_



not modelled 10.2 44
PDB header:plant protein
Chain: A: PDB Molecule:cycloviolacin o14;
PDBTitle: cycloviolacin o14
91d1wiga2



not modelled 10.2 19
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
92d1ubdc4



not modelled 10.2 33
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
93c1ksiA_



not modelled 9.8 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:copper amine oxidase;
PDBTitle: crystal structure of a eukaryotic (pea seedling) copper-containing2 amine oxidase at 2.2a resolution
94d1nbla_



not modelled 9.4 30
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
95c2m9oA_



not modelled 9.3 33
PDB header:plant protein
Chain: A: PDB Molecule:kalata-b7;
PDBTitle: solution structure of kalata b7
96d1okha_



not modelled 8.9 30
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
97d1orla_



not modelled 8.5 20
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
98d1jmpa_



not modelled 8.0 20
Fold:Crambin-like
Superfamily:Crambin-like
Family:Crambin-like
99d1iura_



not modelled 7.4 18
Fold:Long alpha-hairpin
Superfamily:Chaperone J-domain
Family:Chaperone J-domain

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Transmembrane helix prediction 

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