Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3481c_(-)_3900672_3901361
DateFri Aug 9 18:20:15 BST 2019
Unique Job IDe0389468335eace4
SequenceMRGLLPVAGH ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:52.576 Y:47.281 Z:56.957
Model (left) based on template c5vkvA_
Top template information
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccda;
PDBTitle: solution nmr structure of the membrane electron transporter ccda
Confidence and coverage
Confidence: 99.2% Coverage: 83%
190 residues ( 83% of your sequence) have been modelled with 99.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5vkvA_



99.2 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein ccda;
PDBTitle: solution nmr structure of the membrane electron transporter ccda
2c2n4xA_



97.8 11
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c-type biogenesis protein (ccda);
PDBTitle: structure of the transmembrane electron transporter ccda
3c4zdtB_



23.6 17
PDB header:hydrolase
Chain: B: PDB Molecule:structure-specific endonuclease subunit slx4;
PDBTitle: crystal structure of the ring finger domain of slx1 in complex with2 the c-terminal domain of slx4
4c4ni3B_



14.7 9
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-fucosidase gh29;
PDBTitle: crystal structure of gh29 family alpha-l-fucosidase from fusarium2 graminearum in the closed form
5c5mb9C_



12.8 46
PDB header:chaperone
Chain: C: PDB Molecule:putative ribosome associated protein;
PDBTitle: crystal structure of the eukaryotic ribosome associated complex (rac),2 a unique hsp70/hsp40 pair
6c2kncA_



12.7 28
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
7c1p58E_



12.0 10
PDB header:virus
Chain: E: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
8c5mb9D_



10.7 46
PDB header:chaperone
Chain: D: PDB Molecule:putative ribosome associated protein;
PDBTitle: crystal structure of the eukaryotic ribosome associated complex (rac),2 a unique hsp70/hsp40 pair
9c1p58F_



10.2 11
PDB header:virus
Chain: F: PDB Molecule:envelope protein m;
PDBTitle: complex organization of dengue virus membrane proteins as revealed by2 9.5 angstrom cryo-em reconstruction
10c2lklA_



9.1 21
PDB header:cell adhesion
Chain: A: PDB Molecule:erythrocyte membrane protein 1 (pfemp1);
PDBTitle: structure of the core intracellular domain of pfemp1
11c6gn6A_



8.5 23
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-l-fucosidase;
PDBTitle: alpha-l-fucosidase isoenzyme 1 from paenibacillus thiaminolyticus
12c3bjrA_



8.5 16
PDB header:hydrolase
Chain: A: PDB Molecule:putative carboxylesterase;
PDBTitle: crystal structure of a putative carboxylesterase (lp_1002) from2 lactobacillus plantarum wcfs1 at 2.09 a resolution
13d2g5da1



7.0 16
Fold:Double psi beta-barrel
Superfamily:Barwin-like endoglucanases
Family:MLTA-like
14c4b03D_



6.9 10
PDB header:virus
Chain: D: PDB Molecule:dengue virus 1 prm protein;
PDBTitle: 6a electron cryomicroscopy structure of immature dengue virus serotype2 1
15d2pnwa1



6.5 5
Fold:Double psi beta-barrel
Superfamily:Barwin-like endoglucanases
Family:MLTA-like
16d2auwa1



6.5 36
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:NE0471 C-terminal domain-like
17c4eq7B_



5.6 32
PDB header:transport protein
Chain: B: PDB Molecule:abc transporter, substrate binding protein (polyamine);
PDBTitle: structure of atu4243-gaba receptor
18c6mjpF_



5.4 10
PDB header:lipid transport
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
19c2mqkA_



5.4 26
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent target dna activator b;
PDBTitle: solution structure of n terminal domain of the mub aaa+ atpase
20c3j2pD_



5.3 10
PDB header:viral protein
Chain: D: PDB Molecule:small envelope protein m;
PDBTitle: cryoem structure of dengue virus envelope protein heterotetramer
21c2momC_



not modelled 5.2 23
PDB header:membrane protein
Chain: C: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
22c4cbfB_



not modelled 5.2 14
PDB header:virus
Chain: B: PDB Molecule:m protein;
PDBTitle: near-atomic resolution cryo-em structure of dengue serotype 4 virus

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Transmembrane helix prediction 

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