Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3482c_(-)_3901503_3902285
DateFri Aug 9 18:20:15 BST 2019
Unique Job IDdc5314035e5ee511
SequenceMEHDVATSPP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:14.845 Y:19.111 Z:23.638
Model (left) based on template c2ifoA_
Top template information
PDB header:virus
Chain: A: PDB Molecule:inovirus;
PDBTitle: model-building studies of inovirus: genetic variations on a2 geometric theme
Confidence and coverage
Confidence: 66.2% Coverage: 7%
17 residues ( 7% of your sequence) have been modelled with 66.2% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2ifoA_
66.2 47
PDB header:virus
Chain: A: PDB Molecule:inovirus;
PDBTitle: model-building studies of inovirus: genetic variations on a2 geometric theme
2c5ogxA_
41.7 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome p450 reductase;
PDBTitle: crystal structure of amycolatopsis cytochrome p450 reductase gcob.
3c4wqmA_
26.5 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:toluene-4-monooxygenase electron transfer component;
PDBTitle: structure of the toluene 4-monooxygenase nadh oxidoreductase t4mof,2 k270s k271s variant
4d1neia_
22.4 47
Fold:Hypothetical protein YoaG
Superfamily:Hypothetical protein YoaG
Family:Hypothetical protein YoaG
5c1wqsA_
22.0 30
PDB header:hydrolase
Chain: A: PDB Molecule:3c-like protease;
PDBTitle: crystal structure of norovirus 3c-like protease
6c1krhA_
20.8 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase;
PDBTitle: x-ray structure of benzoate dioxygenase reductase
7c6b6iD_
20.4 26
PDB header:viral protein,protease
Chain: D: PDB Molecule:3c-like protease;
PDBTitle: 2.4a resolution structure of human norovirus gii.4 protease
8d1smpi_
18.1 40
Fold:Streptavidin-like
Superfamily:beta-Barrel protease inhibitors
Family:Metalloprotease inhibitor
9c3uoeB_
17.5 50
PDB header:oxidoreductase
Chain: B: PDB Molecule:dehydrogenase;
PDBTitle: the crystal structure of dehydrogenase from sinorhizobium meliloti
10d1fnoa3
12.4 22
Fold:Ferredoxin-like
Superfamily:Bacterial exopeptidase dimerisation domain
Family:Bacterial exopeptidase dimerisation domain
11c2y5pB_
11.8 56
PDB header:protein binding
Chain: B: PDB Molecule:internalin b;
PDBTitle: b-repeat of listeria monocytogenes inlb (internalin b)
12c3al0C_
11.2 43
PDB header:ligase/rna
Chain: C: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c,linker,
PDBTitle: crystal structure of the glutamine transamidosome from thermotoga2 maritima in the glutamylation state.
13d3bmva3
10.5 54
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
14c2vqpA_
10.2 35
PDB header:viral protein
Chain: A: PDB Molecule:matrix protein;
PDBTitle: structure of the matrix protein from human respiratory2 syncytial virus
15c3wolB_
10.2 31
PDB header:hydrolase
Chain: B: PDB Molecule:dipeptidyl aminopeptidase bii;
PDBTitle: crystal structure of the dap bii dipeptide complex i
16c4l8nA_
10.0 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pdz domain protein;
PDBTitle: crystal structure of a pdz domain protein (bdi_1242) from2 parabacteroides distasonis atcc 8503 at 2.50 a resolution
17c5lhxA_
9.9 32
PDB header:structural protein
Chain: A: PDB Molecule:serine/threonine-protein kinase plk4;
PDBTitle: pb3 domain of drosophila melanogaster plk4 (sak)
18c5fjsB_
9.8 11
PDB header:hydrolase
Chain: B: PDB Molecule:glucosylceramidase;
PDBTitle: bacterial beta-glucosidase reveals the structural and functional2 basis of genetic defects in human glucocerebrosidase 2 (gba2)3 disorders
19c2hfrA_
9.7 42
PDB header:antimicrobial protein
Chain: A: PDB Molecule:fowlicidin-3;
PDBTitle: solution structure of antimicrobial peptide fowlicidin 3
20c6fzoC_
9.6 27
PDB header:fluorescent protein
Chain: C: PDB Molecule:smurfp;
PDBTitle: smurfp-y56f mutant
21c4lj2A_
not modelled 9.5 38
PDB header:lyase
Chain: A: PDB Molecule:chorismate synthase;
PDBTitle: crystal structure of chorismate synthase from acinetobacter baumannii2 at 3.15a resolution
22c4ashB_
not modelled 9.2 32
PDB header:hydrolase
Chain: B: PDB Molecule:ns6 protease;
PDBTitle: crystal structure of the ns6 protease from murine norovirus 1
23c2wlbB_
not modelled 8.8 40
PDB header:electron transport
Chain: B: PDB Molecule:electron transfer protein 1, mitochondrial;
PDBTitle: adrenodoxin-like ferredoxin etp1fd(516-618) of schizosaccharomyces2 pombe mitochondria
24c5tgtA_
not modelled 8.8 44
PDB header:ligase
Chain: A: PDB Molecule:glutamate--trna ligase;
PDBTitle: crystal structure of glytamyl-trna synthetase glurs from pseudomonas2 aeruginosa
25c4g5sE_
not modelled 8.6 70
PDB header:cell cycle/signaling protein
Chain: E: PDB Molecule:g-protein-signaling modulator 2;
PDBTitle: structure of lgn gl3/galphai3 complex
26d1b78a_
not modelled 8.6 21
Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:ITPase (Ham1)
27c4g5sF_
not modelled 8.6 70
PDB header:cell cycle/signaling protein
Chain: F: PDB Molecule:g-protein-signaling modulator 2;
PDBTitle: structure of lgn gl3/galphai3 complex
28c3afhA_
not modelled 8.5 56
PDB header:ligase
Chain: A: PDB Molecule:glutamyl-trna synthetase 2;
PDBTitle: crystal structure of thermotoga maritima nondiscriminating glutamyl-2 trna synthetase in complex with a glutamyl-amp analog
29d1i7ha_
not modelled 8.4 31
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
30d1ofza_
not modelled 8.2 17
Fold:6-bladed beta-propeller
Superfamily:Fucose-specific lectin
Family:Fucose-specific lectin
31d1alla_
not modelled 8.1 45
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
32c4po5E_
not modelled 7.9 45
PDB header:photosynthesis
Chain: E: PDB Molecule:allophycocyanin subunit alpha-b;
PDBTitle: crystal structure of allophycocyanin b from synechocystis pcc 6803
33c2mjdA_
not modelled 7.8 40
PDB header:metal binding protein
Chain: A: PDB Molecule:adrenodoxin homolog, mitochondrial;
PDBTitle: oxidized yeast adrenodoxin homolog 1
34d2fh1a1
not modelled 7.7 28
Fold:Gelsolin-like
Superfamily:Actin depolymerizing proteins
Family:Gelsolin-like
35d1e88a3
not modelled 7.1 29
Fold:FnI-like domain
Superfamily:FnI-like domain
Family:Fibronectin type I module
36c2vmlA_
not modelled 7.1 36
PDB header:photosynthesis
Chain: A: PDB Molecule:phycocyanin alpha chain;
PDBTitle: the monoclinic structure of phycocyanin from gloeobacter violaceus
37c1l6vA_
not modelled 7.0 40
PDB header:electron transport
Chain: A: PDB Molecule:adrenodoxin 1;
PDBTitle: structure of reduced bovine adrenodoxin
38d1xrha_
not modelled 7.0 39
Fold:L-sulfolactate dehydrogenase-like
Superfamily:L-sulfolactate dehydrogenase-like
Family:L-sulfolactate dehydrogenase-like
39c5uj5A_
not modelled 7.0 60
PDB header:electron transport
Chain: A: PDB Molecule:adrenodoxin;
PDBTitle: solution structure of the oxidized iron-sulfur protein adrenodoxin2 from encephalitozoon cuniculi. seattle structural genomics center for3 infectious disease target encua.00705.a
40c2k7mA_
not modelled 6.9 42
PDB header:membrane protein
Chain: A: PDB Molecule:gap junction alpha-5 protein;
PDBTitle: structure of the connexin40 carboxyl terminal domain
41c4aorE_
not modelled 6.9 70
PDB header:hydrolase/inhibitor
Chain: E: PDB Molecule:trypsin inhibitor 3;
PDBTitle: cationic trypsin in complex with the spinacia oleracea trypsin2 inhibitor iii (soti-iii)
42c4aorF_
not modelled 6.9 70
PDB header:hydrolase/inhibitor
Chain: F: PDB Molecule:trypsin inhibitor 3;
PDBTitle: cationic trypsin in complex with the spinacia oleracea trypsin2 inhibitor iii (soti-iii)
43d1qp3a_
not modelled 6.7 61
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Photosystem I accessory protein E (PsaE)
44c1g59A_
not modelled 6.7 50
PDB header:ligase/rna
Chain: A: PDB Molecule:glutamyl-trna synthetase;
PDBTitle: glutamyl-trna synthetase complexed with trna(glu).
45c5onoA_
not modelled 6.7 38
PDB header:metal binding protein
Chain: A: PDB Molecule:l-ectoine synthase;
PDBTitle: crystal structure of ectoine synthase from p. lautus
46c6r3uA_
not modelled 6.5 25
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 32;
PDBTitle: endo-levanase bt1760 mutant e221a from bacteroides thetaiotaomicron2 complexed with levantetraose
47d1b33a_
not modelled 6.5 45
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
48d2bt6a1
not modelled 6.5 40
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
49c3lxfC_
not modelled 6.5 50
PDB header:metal binding protein
Chain: C: PDB Molecule:ferredoxin;
PDBTitle: crystal structure of [2fe-2s] ferredoxin arx from novosphingobium2 aromaticivorans
50d1xlqa1
not modelled 6.4 50
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
51d1kn1a_
not modelled 6.2 36
Fold:Globin-like
Superfamily:Globin-like
Family:Phycocyanin-like phycobilisome proteins
52c3ah7A_
not modelled 6.2 28
PDB header:metal binding protein
Chain: A: PDB Molecule:[2fe-2s]ferredoxin;
PDBTitle: crystal structure of the isc-like [2fe-2s] ferredoxin (fdxb) from2 pseudomonas putida jcm 20004
53d1psea_
not modelled 6.2 45
Fold:SH3-like barrel
Superfamily:Electron transport accessory proteins
Family:Photosystem I accessory protein E (PsaE)
54c5frtC_
not modelled 6.1 44
PDB header:oxidoreductase
Chain: C: PDB Molecule:dimeric (2fe-2s) protein;
PDBTitle: structure of the fesii (shethna) protein of azotobacter vinelandii
55d1bg2a_
not modelled 5.9 22
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Motor proteins
56c2cfoA_
not modelled 5.9 50
PDB header:ligase
Chain: A: PDB Molecule:glutamyl-trna synthetase;
PDBTitle: non-discriminating glutamyl-trna synthetase from2 thermosynechococcus elongatus in complex with glu
57d1e9ma_
not modelled 5.9 40
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
58d1gtra2
not modelled 5.9 39
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
59c4a0tB_
not modelled 5.8 42
PDB header:viral protein
Chain: B: PDB Molecule:tail fiber protein;
PDBTitle: structure of the carboxy-terminal domain of bacteriophage t7 fibre2 gp17 containing residues 371-553.
60c2y5cB_
not modelled 5.8 50
PDB header:electron transport
Chain: B: PDB Molecule:adrenodoxin-like protein, mitochondrial;
PDBTitle: structure of human ferredoxin 2 (fdx2)in complex with 2fe2s2 cluster
61c4agiD_
not modelled 5.8 17
PDB header:sugar-binding protein
Chain: D: PDB Molecule:fucose-specific lectin flea;
PDBTitle: crystal structure of fucose binding lectin from aspergillus2 fumigatus (afl) in complex with seleno fucoside.
62c5m5iC_
not modelled 5.8 20
PDB header:motor protein
Chain: C: PDB Molecule:kinesin-like protein cut7;
PDBTitle: pseudo-atomic model of microtubule-bound s.pombe kinesin-5 motor2 domain in the amppnp state (based on cryo-electron microscopy3 experiment): the n-terminus conformation allows formation of a cover4 neck bundle.
63d1b9ra_
not modelled 5.7 60
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
64c6o2uB_
not modelled 5.7 43
PDB header:signaling protein
Chain: B: PDB Molecule:store-operated calcium entry-associated regulatory factor;
PDBTitle: crystal structure of the saraf luminal domain
65d1slqa_
not modelled 5.7 29
Fold:VP4 membrane interaction domain
Superfamily:VP4 membrane interaction domain
Family:VP4 membrane interaction domain
66c6h9nB_
not modelled 5.7 45
PDB header:cell cycle
Chain: B: PDB Molecule:cell division protein ftsb;
PDBTitle: complex of the periplasmic domains of bacterial cell division proteins2 ftsq and ftsb
67d1ekga_
not modelled 5.7 22
Fold:N domain of copper amine oxidase-like
Superfamily:Frataxin/Nqo15-like
Family:Frataxin-like
68d1uypa2
not modelled 5.5 42
Fold:5-bladed beta-propeller
Superfamily:Arabinanase/levansucrase/invertase
Family:Glycosyl hydrolases family 32 N-terminal domain
69d1r89a1
not modelled 5.4 30
Fold:PAP/OAS1 substrate-binding domain
Superfamily:PAP/OAS1 substrate-binding domain
Family:Archaeal tRNA CCA-adding enzyme substrate-binding domain
70c6et5u_
not modelled 5.4 26
PDB header:photosynthesis
Chain: U: PDB Molecule:light-harvesting protein b-1015 gamma chain;
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
71c2mj3A_
not modelled 5.4 40
PDB header:metal binding protein
Chain: A: PDB Molecule:iron-sulfur cluster binding protein;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments and structure of2 iron-sulfur cluster binding protein from ehrlichia chaffeensis
72c6igzE_
not modelled 5.4 39
PDB header:plant protein
Chain: E: PDB Molecule:psae;
PDBTitle: structure of psi-lhci
73c6igzL_
not modelled 5.4 20
PDB header:plant protein
Chain: L: PDB Molecule:psal;
PDBTitle: structure of psi-lhci
74c4proD_
not modelled 5.3 42
PDB header:serine protease
Chain: D: PDB Molecule:alpha-lytic protease;
PDBTitle: alpha-lytic protease complexed with pro region
75c5kz5H_
not modelled 5.3 22
PDB header:transferase/oxidoreductase
Chain: H: PDB Molecule:frataxin, mitochondrial;
PDBTitle: architecture of the human mitochondrial iron-sulfur cluster assembly2 machinery: the complex formed by the iron donor, the sulfur donor,3 and the scaffold
76c2m67A_
not modelled 5.3 35
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: full-length mercury transporter protein merf in lipid bilayer2 membranes
77d1d0na4
not modelled 5.2 24
Fold:Gelsolin-like
Superfamily:Actin depolymerizing proteins
Family:Gelsolin-like
78c3huiA_
not modelled 5.0 50
PDB header:electron transport
Chain: A: PDB Molecule:ferredoxin;
PDBTitle: crystal structure of the mutant a105r of [2fe-2s] ferredoxin in the2 class i cyp199a2 system from rhodopseudomonas palustris
79c2aezA_
not modelled 5.0 37
PDB header:hydrolase
Chain: A: PDB Molecule:fructan 1-exohydrolase iia;
PDBTitle: crystal structure of fructan 1-exohydrolase iia (e201q) from cichorium2 intybus in complex with 1-kestose

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below