Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3483c_(-)_3902329_3902991
DateFri Aug 9 18:20:16 BST 2019
Unique Job IDe12136cfc814537b
SequenceVSDEIDPDWP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:33.550 Y:38.989 Z:41.166
Model (left) based on template d1zpsa1
Top template information
Fold:HisI-like
Superfamily:HisI-like
Family:HisI-like
Confidence and coverage
Confidence: 49.2% Coverage: 32%
71 residues ( 32% of your sequence) have been modelled with 49.2% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1zpsa1
49.2 15
Fold:HisI-like
Superfamily:HisI-like
Family:HisI-like
2d1sy6a1
46.2 16
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
3c3pdgA_
30.3 5
PDB header:unknown function
Chain: A: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
4d1pj5a1
28.5 24
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
5d2p3pa1
24.7 9
Fold:PG1388-like
Superfamily:PG1388-like
Family:PG1388-like
6c3pe9D_
23.5 12
PDB header:unknown function
Chain: D: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
7c5e24D_
21.6 27
PDB header:transport/dna binding/dna
Chain: D: PDB Molecule:protein hairless;
PDBTitle: structure of the su(h)-hairless-dna repressor complex
8c1jbjA_
21.4 16
PDB header:immune system
Chain: A: PDB Molecule:cd3 epsilon and gamma ectodomain fragment
PDBTitle: cd3 epsilon and gamma ectodomain fragment complex in single-2 chain construct
9c2ifmA_
20.2 19
PDB header:virus
Chain: A: PDB Molecule:pf1 filamentous bacteriophage;
PDBTitle: pf1 filamentous bacteriophage: refinement of a molecular2 model by simulated annealing using 3.3 angstroms3 resolution x-ray fibre diffraction data
10c1ql1A_
20.2 19
PDB header:virus
Chain: A: PDB Molecule:pf1 bacteriophage coat protein b;
PDBTitle: inovirus (filamentous bacteriophage) strain pf1 major coat2 protein assembly
11d1jbja1
19.8 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
12c3pe9B_
14.8 21
PDB header:unknown function
Chain: B: PDB Molecule:fibronectin(iii)-like module;
PDBTitle: structures of clostridium thermocellum cbha fibronectin(iii)-like2 modules
13c5y31B_
14.7 19
PDB header:cell adhesion
Chain: B: PDB Molecule:leucine-rich glioma-inactivated protein 1;
PDBTitle: crystal structure of human lgi1-adam22 complex
14d2hfda1
11.7 33
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:HyaE-like
15c4c87A_
10.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:esterase;
PDBTitle: esterase lpest1 from lactobacillus plantarum wcfs1
16d1inva_
10.5 19
Fold:6-bladed beta-propeller
Superfamily:Sialidases
Family:Sialidases (neuraminidases)
17d1gpla1
9.9 38
Fold:Lipase/lipooxygenase domain (PLAT/LH2 domain)
Superfamily:Lipase/lipooxygenase domain (PLAT/LH2 domain)
Family:Colipase-binding domain
18c5naoA_
9.7 35
PDB header:signaling protein
Chain: A: PDB Molecule:toll-like receptor 4;
PDBTitle: nmr structure of tlr4 transmembrane domain (624-657) in dpc micelles
19c2qsiB_
9.5 8
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative hydrogenase expression/formation protein hupg;
PDBTitle: crystal structure of putative hydrogenase expression/formation protein2 hupg from rhodopseudomonas palustris cga009
20c4qn3B_
9.4 26
PDB header:hydrolase
Chain: B: PDB Molecule:neuraminidase;
PDBTitle: crystal structure of neuraminidase n7
21c2yyoA_
not modelled 8.9 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:spry domain-containing protein 3;
PDBTitle: crystal sturcture of human spry domain
22c2zshA_
not modelled 8.8 27
PDB header:hormone receptor
Chain: A: PDB Molecule:probable gibberellin receptor gid1l1;
PDBTitle: structural basis of gibberellin(ga3)-induced della2 recognition by the gibberellin receptor
23c2fynO_
not modelled 8.6 19
PDB header:oxidoreductase
Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur
PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex
24c3cb0B_
not modelled 8.5 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:4-hydroxyphenylacetate 3-monooxygenase;
PDBTitle: cobr
25c4m6tA_
not modelled 8.4 12
PDB header:transcription regulator
Chain: A: PDB Molecule:rna polymerase ii-associated factor 1 homolog, linker, rna
PDBTitle: structure of human paf1 and leo1 complex
26d1o5ha_
not modelled 8.3 22
Fold:Methenyltetrahydrofolate cyclohydrolase-like
Superfamily:Methenyltetrahydrofolate cyclohydrolase-like
Family:Methenyltetrahydrofolate cyclohydrolase-like
27c2lnhC_
not modelled 8.3 83
PDB header:signaling protein/protein binding
Chain: C: PDB Molecule:secreted effector protein espf(u);
PDBTitle: enterohaemorrhagic e. coli (ehec) exploits a tryptophan switch to2 hijack host f-actin assembly
28c2ecrA_
not modelled 7.8 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavin reductase component (hpac) of 4-hydroxyphenylacetate
PDBTitle: crystal structure of the ligand-free form of the flavin reductase2 component (hpac) of 4-hydroxyphenylacetate 3-monooxygenase
29c2r0xA_
not modelled 7.8 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:possible flavin reductase;
PDBTitle: crystal structure of a putative flavin reductase (ycdh, hs_1225) from2 haemophilus somnus 129pt at 1.06 a resolution
30c4hx6D_
not modelled 7.4 28
PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase;
PDBTitle: streptomyces globisporus c-1027 nadh:fad oxidoreductase sgce6
31c6chgB_
not modelled 7.3 26
PDB header:transferase
Chain: B: PDB Molecule:klla0c10945p;
PDBTitle: crystal structure of the yeast compass catalytic module
32c5namA_
not modelled 7.1 35
PDB header:signaling protein
Chain: A: PDB Molecule:toll-like receptor 4;
PDBTitle: nmr structure of tlr4 transmembrane domain (624-670) in dmpg/dhpc2 bicelles
33c2we7A_
not modelled 6.8 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:xanthine dehydrogenase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv0376c2 homologue from mycobacterium smegmatis
34c2pm8A_
not modelled 6.4 13
PDB header:hydrolase
Chain: A: PDB Molecule:cholinesterase;
PDBTitle: crystal structure of recombinant full length human2 butyrylcholinesterase
35d1dx4a_
not modelled 6.3 10
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Acetylcholinesterase-like
36c5xebC_
not modelled 6.2 22
PDB header:viral protein
Chain: C: PDB Molecule:envelope glycoprotein;
PDBTitle: structure of the envelope glycoprotein of dhori virus
37d1ivga_
not modelled 6.1 22
Fold:6-bladed beta-propeller
Superfamily:Sialidases
Family:Sialidases (neuraminidases)
38c3tiaC_
not modelled 6.0 22
PDB header:hydrolase/hydrolase inhibitor
Chain: C: PDB Molecule:neuraminidase;
PDBTitle: crystal structure of 1957 pandemic h2n2 neuraminidase complexed with2 laninamivir
39c3u6gB_
not modelled 6.0 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein duf4425;
PDBTitle: crystal structure of a domain of unknown function, duf4425 (bvu_3708)2 from bacteroides vulgatus atcc 8482 at 1.35 a resolution
40c4fvkA_
not modelled 5.9 22
PDB header:hydrolase
Chain: A: PDB Molecule:neuraminidase;
PDBTitle: structural and functional characterization of neuraminidase-like2 molecule n10 derived from bat influenza a virus
41c3d7rB_
not modelled 5.8 15
PDB header:hydrolase
Chain: B: PDB Molecule:esterase;
PDBTitle: crystal structure of a putative esterase from staphylococcus aureus
42c1vlyA_
not modelled 5.6 11
PDB header:transferase
Chain: A: PDB Molecule:unknown protein from 2d-page;
PDBTitle: crystal structure of a putative aminomethyltransferase (ygfz) from2 escherichia coli at 1.30 a resolution
43c2wirB_
not modelled 5.6 21
PDB header:hydrolase
Chain: B: PDB Molecule:alpha/beta hydrolase fold-3 domain protein;
PDBTitle: hyperthermophilic esterase from the archeon pyrobaculum2 calidifontis
44c1nmbN_
not modelled 5.6 22
PDB header:complex (hydrolase/immunoglobulin)
Chain: N: PDB Molecule:n9 neuraminidase;
PDBTitle: the structure of a complex between the nc10 antibody and influenza2 virus neuraminidase and comparison with the overlapping binding site3 of the nc41 antibody
45d1fo5a_
not modelled 5.6 22
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
46d1qvpa_
not modelled 5.5 26
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:FeoA-like
47c3ga7A_
not modelled 5.4 13
PDB header:hydrolase
Chain: A: PDB Molecule:acetyl esterase;
PDBTitle: 1.55 angstrom crystal structure of an acetyl esterase from salmonella2 typhimurium
48d1f8ea_
not modelled 5.4 22
Fold:6-bladed beta-propeller
Superfamily:Sialidases
Family:Sialidases (neuraminidases)
49c6i2tC_
not modelled 5.4 13
PDB header:hydrolase
Chain: C: PDB Molecule:cholinesterase;
PDBTitle: cryoem reconstruction of full-length, fully-glycosylated human2 butyrylcholinesterase tetramer
50c2hu4D_
not modelled 5.3 11
PDB header:hydrolase
Chain: D: PDB Molecule:neuraminidase;
PDBTitle: n1 neuraminidase in complex with oseltamivir 2
51c6ijo2_
not modelled 5.3 15
PDB header:photosynthesis
Chain: 2: PDB Molecule:lhca2;
PDBTitle: photosystem i of chlamydomonas reinhardtii
52d1qe3a_
not modelled 5.2 21
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Acetylcholinesterase-like
53d2aepa1
not modelled 5.2 22
Fold:6-bladed beta-propeller
Superfamily:Sialidases
Family:Sialidases (neuraminidases)
54c3pgeA_
not modelled 5.2 26
PDB header:dna binding protein
Chain: A: PDB Molecule:sumo-modified proliferating cell nuclear antigen;
PDBTitle: structure of sumoylated pcna

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below