Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3484_(cpsA)_3903257_3904795
DateFri Aug 9 18:20:16 BST 2019
Unique Job IDef5d8db2a6e7d641
SequenceMARSEGNRPR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:53.939 Y:42.157 Z:54.238
Model (left) based on template c3okzB_
Top template information
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative uncharacterized protein gbs0355;
PDBTitle: crystal structure of protein gbs0355 from streptococcus agalactiae,2 northeast structural genomics consortium target sar127
Confidence and coverage
Confidence:100.0% Coverage: 54%
277 residues ( 54% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
371 residues ( 72%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3okzB_



100.0 20
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative uncharacterized protein gbs0355;
PDBTitle: crystal structure of protein gbs0355 from streptococcus agalactiae,2 northeast structural genomics consortium target sar127
2c4de8A_



100.0 24
PDB header:membrane protein
Chain: A: PDB Molecule:cps2a;
PDBTitle: lytr-cps2a-psr family protein with bound octaprenyl monophosphate2 lipid
3c3pe5B_



100.0 25
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: three-dimensional structure of protein a7vv38_9clot from clostridium2 leptum dsm 753, northeast structural genomics consortium target3 qlr103
4c5v8cA_



100.0 23
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: lytr-csp2a-psr enzyme from actinomyces oris
5c3qfiA_



100.0 23
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: x-ray crystal structure of transcriptional regulator (ef0465) from2 enterococcus faecalis, northeast structural genomics consortium3 target efr190
6c3owqB_



100.0 29
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:lin1025 protein;
PDBTitle: x-ray structure of lin1025 protein from listeria innocua, northeast2 structural genomics consortium target lkr164
7c3nroA_



100.0 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lmo1026 protein;
PDBTitle: crystal structure of putative transcriptional factor lmo1026 from2 listeria monocytogenes (fragment 52-321), northeast structural3 genomics consortium target lmr194
8c3mejA_



100.0 25
PDB header:transcriptional regulator
Chain: A: PDB Molecule:transcriptional regulator ywtf;
PDBTitle: crystal structure of putative transcriptional regulator ywtf from2 bacillus subtilis, northeast structural genomics consortium target3 sr736
9c4obmA_



100.0 16
PDB header:transcription regulator
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative transcription regulator (eubsir_01389)2 from eubacterium siraeum dsm 15702 at 2.15 a resolution
10c3nxhA_



100.0 22
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator yvhj;
PDBTitle: crystal structure of the transcriptional regulator yvhj from bacillus2 subtilis. northeast structural genomics consortium target sr735.
11c2m5yA_



99.4 22
PDB header:unknown function
Chain: A: PDB Molecule:putative tuberculin related peptide;
PDBTitle: solution structure of the c-terminal domain of rv0431
12c5j5vC_



43.2 27
PDB header:toxin
Chain: C: PDB Molecule:immunity protein cdii;
PDBTitle: cdia-ct from uropathogenic escherichia coli in complex with cognate2 immunity protein and cysk
13c4ddpA_



36.2 25
PDB header:membrane protein
Chain: A: PDB Molecule:beclin-1;
PDBTitle: crystal structure of beclin 1 evolutionarily conserved domain(ecd)
14c2pjuD_



31.4 16
PDB header:transcription
Chain: D: PDB Molecule:propionate catabolism operon regulatory protein;
PDBTitle: crystal structure of propionate catabolism operon regulatory protein2 prpr
15c3vp7A_



25.2 20
PDB header:protein transport
Chain: A: PDB Molecule:vacuolar protein sorting-associated protein 30;
PDBTitle: crystal structure of the beta-alpha repeated, autophagy-specific2 (bara) domain of vps30/atg6
16c6dfdB_



20.1 33
PDB header:metal transport
Chain: B: PDB Molecule:metal transporter cnnm3;
PDBTitle: crystal structure of cnnm3 cyclic nucleotide-binding homology domain
17c5z5bA_



18.5 20
PDB header:hydrolase
Chain: A: PDB Molecule:protein-tyrosine phosphatase;
PDBTitle: crystal structure of tk-ptp in the g95a mutant form
18d1ny8a_



15.0 24
Fold:Alpha-lytic protease prodomain-like
Superfamily:BolA-like
Family:BolA-like
19c2fgyA_



14.7 57
PDB header:lyase
Chain: A: PDB Molecule:carboxysome shell polypeptide;
PDBTitle: beta carbonic anhydrase from the carboxysomal shell of2 halothiobacillus neapolitanus (csosca)
20c6f0kA_



14.2 10
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
21c3txsC_



not modelled 13.4 18
PDB header:viral protein
Chain: C: PDB Molecule:terminase dna packaging enzyme small subunit;
PDBTitle: crystal structure of phage 44rr small terminase gp16
22c3tr3A_



not modelled 13.0 11
PDB header:unknown function
Chain: A: PDB Molecule:bola;
PDBTitle: structure of a bola protein homologue from coxiella burnetii
23c5dfzD_



not modelled 11.8 22
PDB header:transferase
Chain: D: PDB Molecule:vacuolar protein sorting-associated protein 30;
PDBTitle: structure of vps34 complex ii from s. cerevisiae.
24c4puiA_



not modelled 11.4 14
PDB header:protein binding
Chain: A: PDB Molecule:sufe-like protein, chloroplastic;
PDBTitle: bola domain of sufe1 from arabidopsis thaliana
25c2nclA_



not modelled 10.2 10
PDB header:protein binding
Chain: A: PDB Molecule:bola-like protein 3;
PDBTitle: solution structure of bola3 from homo sapiens
26c3o2eA_



not modelled 10.0 19
PDB header:unknown function
Chain: A: PDB Molecule:bola-like protein;
PDBTitle: crystal structure of a bol-like protein from babesia bovis
27c2dhmA_



not modelled 9.4 19
PDB header:protein binding
Chain: A: PDB Molecule:protein bola;
PDBTitle: solution structure of the bola protein from escherichia coli
28c4pugA_



not modelled 9.1 14
PDB header:dna binding protein
Chain: A: PDB Molecule:bola like protein;
PDBTitle: bola1 from arabidopsis thaliana
29c4qn9A_



not modelled 8.3 11
PDB header:hydrolase
Chain: A: PDB Molecule:n-acyl-phosphatidylethanolamine-hydrolyzing phospholipase
PDBTitle: structure of human nape-pld
30c4hynA_



not modelled 8.0 11
PDB header:signaling protein
Chain: A: PDB Molecule:chec, inhibitor of mcp methylation / flin fusion protein;
PDBTitle: x-ray crystal structure of thermotoga maritima fliy
31c5nfmA_



not modelled 8.0 13
PDB header:ligase
Chain: A: PDB Molecule:yrba;
PDBTitle: crystal structure of yrba from sinorhizobium meliloti in complex with2 copper.
32c3samB_



not modelled 7.0 25
PDB header:viral protein
Chain: B: PDB Molecule:rifampicin resistance protein;
PDBTitle: structure of d13, the scaffolding protein of vaccinia virus (mutant2 d513g)
33c2mm9A_



not modelled 6.9 10
PDB header:transcription
Chain: A: PDB Molecule:bola2;
PDBTitle: solution structure of reduced bola2 from arabidopsis thaliana
34c1v60A_



not modelled 6.8 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:riken cdna 1810037g04;
PDBTitle: solution structure of bola1 protein from mus musculus
35c5y4bA_



not modelled 6.8 29
PDB header:electron transport
Chain: A: PDB Molecule:bola-like protein 2;
PDBTitle: solution structure of yeast fra2
36c6dj3B_



not modelled 6.7 36
PDB header:transport protein
Chain: B: PDB Molecule:metal transporter cnnm2;
PDBTitle: crystal structure of cnnm2 cyclic nucleotide-binding homology domain
37c1xs3A_



not modelled 5.7 7
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein xc975;
PDBTitle: solution structure analysis of the xc975 protein
38c1n7sB_



not modelled 5.6 17
PDB header:transport protein
Chain: B: PDB Molecule:syntaxin 1a;
PDBTitle: high resolution structure of a truncated neuronal snare complex
39c5iiqA_



not modelled 5.5 13
PDB header:transferase
Chain: A: PDB Molecule:vacuolar transporter chaperone 4;
PDBTitle: structure of the spx-ttm domain fragment of the yeast inorganic2 polyphophate polymerase vtc4 (form b).
40c4b96A_



not modelled 5.5 10
PDB header:sugar binding protein
Chain: A: PDB Molecule:cellulose binding domain-containing protein;
PDBTitle: family 3b carbohydrate-binding module from the biomass2 sensoring system of clostridium clariflavum
41c5ijjB_



not modelled 5.1 38
PDB header:inositol polyphosphate binding protein
Chain: B: PDB Molecule:spx domain;
PDBTitle: structure of the spx domain of chaetomium thermophilum2 glycerophosphodiester phosphodiesterase 1 in complex with inositol3 hexakisphosphate (insp6)
42d1o57a1



not modelled 5.0 14
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:N-terminal domain of Bacillus PurR

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below