1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	E	F	Q	R	A	A	V	R	L	H	I	L	H	H	A	A	D	N	E	V	H	G	A	W	L	T	Q	E	L	S	R	H	G	Y	R	V	S	P	G	T	L	Y	P	T	L	H	R	L	E	A	D	G	L	L	V	S	E	Q
Secondary structure
SS confidence
Disorder		?	?	?																		?	?											?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Sequence		R	V	V	D	G	R	A	R	R	V	Y	R	A	T	P	A	G	R	A	A	L	T	E	D	R	R	A	L	E	E	L	A	R	E	V	L	G	G	Q	S	H	T	A	G	N	G	T
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?																																	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key High(9)                     Low (0)

? Disordered ( 21%) Alpha helix ( 62%) Beta strand ( 9%)

Rank Aligned region

PDB 5zhc chain A Region: 1 - 96 Aligned: 96 Modelled: 96 Confidence: 99.9% Identity: 100% PDB header:dna binding protein Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of the padr-family transcriptional regulator rv34882 of mycobacterium tuberculosis h37rv Phyre2 PDB 5h20 chain A Region: 2 - 95 Aligned: 94 Modelled: 94 Confidence: 99.9% Identity: 28% PDB header:transcription regulator Chain: A: PDB Molecule:putative padr-family transcriptional regulatory protein; PDBTitle: x-ray structure of padr-like transcription factor from bacteroid2 fragilis Phyre2 PDB 5zqh chain A Region: 2 - 95 Aligned: 94 Modelled: 94 Confidence: 99.9% Identity: 22% PDB header:dna binding protein Chain: A: PDB Molecule:padr family transcriptional regulator; PDBTitle: crystal structure of streptococcus transcriptional regulator Phyre2 PDB 4esb chain A Region: 3 - 99 Aligned: 97 Modelled: 97 Confidence: 99.9% Identity: 27% PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, padr family; PDBTitle: crystal structure of padr-like transcriptional regulator (bc4206) from2 bacillus cereus strain atcc 14579 Phyre2 PDB 2esh chain A domain 1 Region: 2 - 95 Aligned: 94 Modelled: 94 Confidence: 99.9% Identity: 32% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: PadR-like Phyre2 PDB 3l7w chain A Region: 3 - 103 Aligned: 100 Modelled: 101 Confidence: 99.9% Identity: 21% PDB header:transcription Chain: A: PDB Molecule:putative uncharacterized protein smu.1704; PDBTitle: the crystal structure of smu.1704 from streptococcus mutans ua159 Phyre2 PDB 3ri2 chain B Region: 1 - 95 Aligned: 91 Modelled: 95 Confidence: 99.9% Identity: 31% PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, padr-like family; PDBTitle: crystal structure of padr family transcriptional regulator from2 eggerthella lenta dsm 2243 Phyre2 PDB 5dym chain A Region: 7 - 95 Aligned: 89 Modelled: 89 Confidence: 99.9% Identity: 18% PDB header:dna binding protein Chain: A: PDB Molecule:padr-family transcriptional regulator; PDBTitle: crystal structure of a padr family transcription regulator from2 hypervirulent clostridium difficile r20291 - cdpadr_0991 to 1.893 angstrom resolution Phyre2 PDB 3f8f chain A Region: 2 - 95 Aligned: 93 Modelled: 94 Confidence: 99.9% Identity: 22% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, padr-like family; PDBTitle: crystal structure of multidrug binding transcriptional regulator lmrr2 complexed with daunomycin Phyre2 PDB 3hhh chain A Region: 3 - 95 Aligned: 92 Modelled: 93 Confidence: 99.9% Identity: 25% PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, padr family; PDBTitle: crystal structure of transcriptional regulator, a member of padr2 family, from enterococcus faecalis v583 Phyre2 PDB 3elk chain A Region: 3 - 100 Aligned: 98 Modelled: 98 Confidence: 99.9% Identity: 22% PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator ta0346; PDBTitle: crystal structure of putative transcriptional regulator ta0346 from2 thermoplasma acidophilum Phyre2 PDB 4esf chain A Region: 1 - 95 Aligned: 91 Modelled: 95 Confidence: 99.9% Identity: 24% PDB header:transcription Chain: A: PDB Molecule:padr-like transcriptional regulator; PDBTitle: crystal structure of padr-like transcriptional regulator (bce3449)2 from bacillus cereus strain atcc 10987 Phyre2 PDB 1xma chain A Region: 3 - 95 Aligned: 92 Modelled: 93 Confidence: 99.9% Identity: 23% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: PadR-like Phyre2 PDB 1xma chain A Region: 3 - 95 Aligned: 92 Modelled: 93 Confidence: 99.9% Identity: 23% PDB header:transcription Chain: A: PDB Molecule:predicted transcriptional regulator; PDBTitle: structure of a transcriptional regulator from clostridium thermocellum2 cth-833 Phyre2 PDB 2e1n chain A Region: 2 - 91 Aligned: 90 Modelled: 90 Confidence: 99.9% Identity: 24% PDB header:circadian clock protein Chain: A: PDB Molecule:pex; PDBTitle: crystal structure of the cyanobacterium circadian clock modifier pex Phyre2 PDB 2dql chain A Region: 4 - 93 Aligned: 90 Modelled: 90 Confidence: 99.9% Identity: 23% PDB header:circadian clock protein Chain: A: PDB Molecule:pex protein; PDBTitle: crystal structure of the circadian clock associated protein pex from2 anabaena Phyre2 PDB 5x11 chain G Region: 7 - 86 Aligned: 80 Modelled: 80 Confidence: 99.9% Identity: 18% PDB header:transcription/dna Chain: G: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of bacillus subtilis padr in complex with operator2 dna Phyre2 PDB 3l9f chain D Region: 9 - 86 Aligned: 78 Modelled: 78 Confidence: 99.9% Identity: 29% PDB header:transcription regulator Chain: D: PDB Molecule:putative uncharacterized protein smu.1604c; PDBTitle: the crystal structure of smu.1604c from streptococcus mutans ua159 Phyre2 PDB 5z7b chain B Region: 8 - 86 Aligned: 79 Modelled: 79 Confidence: 99.9% Identity: 23% PDB header:transcription Chain: B: PDB Molecule:padr family transcriptional regulator; PDBTitle: crystal structure of the vanr transcription factor in complex with2 vanillate Phyre2 PDB 6faq chain A Region: 7 - 91 Aligned: 82 Modelled: 85 Confidence: 99.8% Identity: 27% PDB header:dna binding protein Chain: A: PDB Molecule:dna binding protein; PDBTitle: structure of h. salinarum rosr (vng0258) grown from kbr Phyre2 1 c5zhcA_ 2 c5h20A_ 3 c5zqhA_ 4 c4esbA_ 5 d2esha1 6 c3l7wA_ 7 c3ri2B_ 8 c5dymA_ 9 c3f8fA_ 10 c3hhhA_ 11 c3elkA_ 12 c4esfA_ 13 d1xmaa_ 14 c1xmaA_ 15 c2e1nA_ 16 c2dqlA_ 17 c5x11G_ 18 c3l9fD_ 19 c5z7bB_ 20 c6faqA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443