Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3491_(-)_3910069_3910647
DateFri Aug 9 18:20:16 BST 2019
Unique Job ID813cdfa347b7d5c2
SequenceVNIRCGLAAG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:26.196 Y:23.847 Z:41.823
Model (left) based on template c4r7vA_
Top template information
PDB header:protein binding
Chain: A: PDB Molecule:arrestin domain-containing protein 3;
PDBTitle: crystal structure of n-lobe of human arrdc3(1-165)
Confidence and coverage
Confidence: 43.3% Coverage: 12%
23 residues ( 12% of your sequence) have been modelled with 43.3% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4r7vA_
43.3 17
PDB header:protein binding
Chain: A: PDB Molecule:arrestin domain-containing protein 3;
PDBTitle: crystal structure of n-lobe of human arrdc3(1-165)
2c6czjA_
31.8 38
PDB header:de novo protein
Chain: A: PDB Molecule:b10;
PDBTitle: structure of a redesigned beta barrel, b10
3d1hxma2
27.6 26
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
4c3qrzC_
22.3 20
PDB header:hormone receptor
Chain: C: PDB Molecule:abscisic acid receptor pyl5;
PDBTitle: crystal structure of native abscisic acid receptor pyl5 at 2.62 angstrom
5c1g4mA_
19.6 19
PDB header:signaling protein
Chain: A: PDB Molecule:beta-arrestin1;
PDBTitle: crystal structure of bovine beta-arrestin 1
6c5icuA_
17.6 12
PDB header:chaperone
Chain: A: PDB Molecule:copc;
PDBTitle: the crystal structure of copc from methylosinus trichosporium ob3b
7c4gejD_
17.3 14
PDB header:protein binding
Chain: D: PDB Molecule:thioredoxin-interacting protein;
PDBTitle: n-terminal domain of vdup-1
8c1sujA_
16.8 19
PDB header:signaling protein
Chain: A: PDB Molecule:cone arrestin;
PDBTitle: x-ray crystal structure of ambystoma tigrinum cone arrestin
9c3n6yA_
16.7 23
PDB header:unknown function
Chain: A: PDB Molecule:immunoglobulin-like protein;
PDBTitle: crystal structure of an immunoglobulin-like protein (pa1606) from2 pseudomonas aeruginosa at 1.50 a resolution
10c1ayrA_
15.8 25
PDB header:sensory transduction
Chain: A: PDB Molecule:arrestin;
PDBTitle: arrestin from bovine rod outer segments
11c1jsyA_
15.6 20
PDB header:signaling protein
Chain: A: PDB Molecule:bovine arrestin-2 (full length);
PDBTitle: crystal structure of bovine arrestin-2
12c5djjA_
14.5 25
PDB header:hydrolase
Chain: A: PDB Molecule:3'-phosphoadenosine 5'-phosphate phosphatase;
PDBTitle: structure of m. tuberculosis cysq, a pap phosphatase with po4 and 2mg2 bound
13c5x5sA_
14.2 15
PDB header:hydrolase
Chain: A: PDB Molecule:amylase;
PDBTitle: ligand induced structure of amyp-sbd
14d2q9oa3
12.3 21
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
15d2hg6a1
12.1 24
Fold:PA1123-like
Superfamily:PA1123-like
Family:PA1123-like
16c1cf1B_
11.6 25
PDB header:structural protein
Chain: B: PDB Molecule:protein (arrestin);
PDBTitle: arrestin from bovine rod outer segments
17c3uc0B_
9.7 25
PDB header:viral protein/immune system
Chain: B: PDB Molecule:envelope protein;
PDBTitle: crystal structure of domain i of the envelope glycoprotein ectodomain2 from dengue virus serotype 4 in complex with the fab fragment of the3 chimpanzee monoclonal antibody 5h2
18c3nrlB_
9.3 18
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein rumgna_01417;
PDBTitle: crystal structure of protein rumgna_01417 from ruminococcus gnavus,2 northeast structural genomics consortium target ugr76
19c6h7wC_
9.1 5
PDB header:protein transport
Chain: C: PDB Molecule:vacuolar protein sorting-associated protein 26-like
PDBTitle: model of retromer-vps5 complex assembled on membrane.
20c2rpsA_
8.9 67
PDB header:immune system
Chain: A: PDB Molecule:chemokine;
PDBTitle: solution structure of a novel insect chemokine isolated from2 integument
21c6b0nG_
not modelled 8.7 27
PDB header:viral protein/immune system
Chain: G: PDB Molecule:envelope glycoprotein gp140;
PDBTitle: crystal structure of the cleavage-independent prefusion hiv env2 glycoprotein trimer of the clade a bg505 isolate (nfl construct) in3 complex with fabs pgt122 and pgv19 at 3.39 a
22d1ypze2
not modelled 8.7 32
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
23c3fk4A_
not modelled 8.7 14
PDB header:isomerase
Chain: A: PDB Molecule:rubisco-like protein;
PDBTitle: crystal structure of rubisco-like protein from bacillus2 cereus atcc 14579
24d1lmia_
not modelled 8.3 13
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Antigen MPT63/MPB63 (immunoprotective extracellular protein)
Family:Antigen MPT63/MPB63 (immunoprotective extracellular protein)
25d2j5la1
not modelled 8.2 28
Fold:Apical membrane antigen 1
Superfamily:Apical membrane antigen 1
Family:Apical membrane antigen 1
26c2j5lA_
not modelled 8.2 28
PDB header:immune system
Chain: A: PDB Molecule:apical membrane antigen 1;
PDBTitle: structure of a plasmodium falciparum apical membrane antigen 1-fab f8.2 12.19 complex
27d1usha1
not modelled 8.2 11
Fold:5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
Superfamily:5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
Family:5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
28c5hycC_
not modelled 8.0 47
PDB header:unknown function
Chain: C: PDB Molecule:cytoplasmic dynein 1 intermediate chain 2;
PDBTitle: structure based function annotation of a hypothetical protein2 mgg_01005 related to the development of rice blast fungus
29d1ykwa1
not modelled 7.9 10
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
30d1fcda2
not modelled 7.7 18
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:FAD/NAD-linked reductases, N-terminal and central domains
31d1lgbc_
not modelled 7.5 31
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Transferrin
32d1qasa3
not modelled 7.4 27
Fold:TIM beta/alpha-barrel
Superfamily:PLC-like phosphodiesterases
Family:Mammalian PLC
33c6cp8B_
not modelled 7.4 50
PDB header:toxin/antitoxin
Chain: B: PDB Molecule:cdia;
PDBTitle: contact-dependent growth inhibition toxin-immunity protein complex2 from from e. coli 3006
34d2cpqa1
not modelled 7.4 5
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
35c4ufqB_
not modelled 7.1 26
PDB header:hydrolase
Chain: B: PDB Molecule:hyaluronidase;
PDBTitle: structure of a novel hyaluronidase (hyal_sk) from streptomyces2 koganeiensis.
36d1ka1a_
not modelled 6.9 28
Fold:Carbohydrate phosphatase
Superfamily:Carbohydrate phosphatase
Family:Inositol monophosphatase/fructose-1,6-bisphosphatase-like
37c5j6yA_
not modelled 6.9 22
PDB header:cell adhesion
Chain: A: PDB Molecule:antifreeze protein;
PDBTitle: crystal structure of pa14 domain of mpafp antifreeze protein
38c5fk0F_
not modelled 6.5 9
PDB header:structural protein
Chain: F: PDB Molecule:coatomer subunit delta;
PDBTitle: yeast delta-cop-i mu-homology domain
39d1svda1
not modelled 6.4 24
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
40c2djyB_
not modelled 6.3 46
PDB header:ligase/signaling protein
Chain: B: PDB Molecule:mothers against decapentaplegic homolog 7;
PDBTitle: solution structure of smurf2 ww3 domain-smad7 py peptide2 complex
41c2kxqB_
not modelled 6.3 46
PDB header:protein binding
Chain: B: PDB Molecule:smad7 py motif containing peptide;
PDBTitle: solution structure of smurf2 ww2 and ww3 bound to smad7 py motif2 containing peptide
42c5yt6B_
not modelled 6.0 17
PDB header:protein binding
Chain: B: PDB Molecule:tax1-binding protein 1;
PDBTitle: crystal structure of tax1bp1 ubz2 in complex with mono-ubiquitin
43d1x4ka1
not modelled 6.0 56
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
44c2czhB_
not modelled 5.9 25
PDB header:hydrolase
Chain: B: PDB Molecule:inositol monophosphatase 2;
PDBTitle: crystal structure of human myo-inositol monophosphatase 22 (impa2) with phosphate ion (orthorhombic form)
45c2n59A_
not modelled 5.9 16
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein csgh;
PDBTitle: solution structure of r. palustris csgh
46c6hunA_
not modelled 5.8 13
PDB header:photosynthesis
Chain: A: PDB Molecule:ribulose bisphosphate carboxylase;
PDBTitle: dimeric archeal rubisco from hyperthermus butylicus
47d1ej7l1
not modelled 5.8 21
Fold:TIM beta/alpha-barrel
Superfamily:RuBisCo, C-terminal domain
Family:RuBisCo, large subunit, C-terminal domain
48d1gv8a_
not modelled 5.7 19
Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Transferrin
49c4nasD_
not modelled 5.7 21
PDB header:lyase
Chain: D: PDB Molecule:ribulose-bisphosphate carboxylase;
PDBTitle: the crystal structure of a rubisco-like protein (mtnw) from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446
50d1cc3a_
not modelled 5.5 13
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
51d2fmra_
not modelled 5.5 6
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
52d1w7ca2
not modelled 5.5 38
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
53c5swkC_
not modelled 5.4 13
PDB header:de novo protein
Chain: C: PDB Molecule:de novo protein based on the inhibitor amoebiasin-1;
PDBTitle: crystal structure of p53 epitope-scaffold based on a inhibitor of2 cysteine proteases in complex with human mdm2
54c1m1jA_
not modelled 5.3 38
PDB header:blood clotting
Chain: A: PDB Molecule:fibrinogen alpha subunit;
PDBTitle: crystal structure of native chicken fibrinogen with two different2 bound ligands
55c4gdgA_
not modelled 5.2 21
PDB header:hydrolase
Chain: A: PDB Molecule:3'(2'),5'-bisphosphate nucleotidase, putative;
PDBTitle: structural and functional characterization of 3'(2'),5'-bisphosphate2 nucleotidase1 from entamoeba histolytica
56c3nwrA_
not modelled 5.2 17
PDB header:lyase
Chain: A: PDB Molecule:a rubisco-like protein;
PDBTitle: crystal structure of a rubisco-like protein from burkholderia fungorum
57d1nwpa_
not modelled 5.2 13
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
58c5muyB_
not modelled 5.1 38
PDB header:viral protein
Chain: B: PDB Molecule:l protein;
PDBTitle: structure of a c-terminal domain of a reptarenavirus l protein with2 m7gtp
59c4h69A_
not modelled 5.1 33
PDB header:isomerase
Chain: A: PDB Molecule:allene oxide cyclase;
PDBTitle: crystal structure of the allene oxide cyclase 2 from physcomitrella2 patens complexed with substrate analog
60c4s3lA_
not modelled 5.1 13
PDB header:cell adhesion
Chain: A: PDB Molecule:major pilin protein;
PDBTitle: crystal structure of major pilin protein pitb from type ii pilus of2 streptococcus pneumoniae
61c5lc5A_
not modelled 5.1 38
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadh-ubiquinone oxidoreductase chain 3;
PDBTitle: structure of mammalian respiratory complex i, class2

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