Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3492c_(-)_3910644_3911126
DateFri Aug 9 18:20:16 BST 2019
Unique Job ID6543fdf113632008
SequenceMRRLISVAYA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.401 Y:34.043 Z:56.596
Model (left) based on template c5d9rA_
Top template information
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein accumulation and replication of chloroplasts 6,
PDBTitle: crystal structure of a conserved domain in the intermembrane space2 region of the plastid division protein arc6
Confidence and coverage
Confidence: 97.2% Coverage: 61%
97 residues ( 61% of your sequence) have been modelled with 97.2% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
136 residues ( 85%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5d9rA_
97.2 13
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein accumulation and replication of chloroplasts 6,
PDBTitle: crystal structure of a conserved domain in the intermembrane space2 region of the plastid division protein arc6
2d2ux0a1
97.2 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
3d3b8la1
96.9 18
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
4c3wz4F_
96.8 16
PDB header:unknown function
Chain: F: PDB Molecule:doti;
PDBTitle: structure of the periplasmic domain of doti (crystal form i)
5c5cnlA_
96.8 12
PDB header:protein transport
Chain: A: PDB Molecule:icml-like;
PDBTitle: crystal structure of an icml-like type iv secretion system protein2 (lpg0120) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 at 2.65 a resolution
6c4i4kB_
96.8 10
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: streptomyces globisporus c-1027 9-membered enediyne conserved protein2 sgce6
7d1hkxa_
96.7 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
8c3wz3A_
96.6 11
PDB header:unknown function
Chain: A: PDB Molecule:tram protein;
PDBTitle: structure of a periplasmic fragment of tram
9c5u9oD_
96.6 13
PDB header:cell cycle
Chain: D: PDB Molecule:plastid division protein cdp1, chloroplastic,plastid
PDBTitle: cocrystal structure of the intermembrane space region of the plastid2 division proteins parc6 and pdv1
10d2rfra1
96.5 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
11c3h51A_
96.5 17
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin dependent protein kinase ii
PDBTitle: crystal structure of putative calcium/calmodulin dependent protein2 kinase ii association domain (np_636218.1) from xanthomonas3 campestris at 1.70 a resolution
12c4ovmE_
96.3 12
PDB header:unknown function
Chain: E: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: crystal structure of sgcj protein from streptomyces carzinostaticus
13d3cu3a1
96.1 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
14d1idpa_
96.0 20
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
15d2f86b1
95.9 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
16c3a76B_
95.7 8
PDB header:lyase
Chain: B: PDB Molecule:gamma-hexachlorocyclohexane dehydrochlorinase;
PDBTitle: the crystal structure of lina
17d2rgqa1
95.6 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
18d3stda_
95.5 18
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
19d2chca1
95.4 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
20d3ef8a1
95.2 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
21c5ig5E_
not modelled 95.2 11
PDB header:transferase
Chain: E: PDB Molecule:camkii-b hub;
PDBTitle: crystal structure of n. vectensis camkii-b hub at ph 4.2
22c3robC_
not modelled 94.6 15
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved protein from planctomyces2 limnophilus dsm 3776
23c5ig4A_
not modelled 94.5 11
PDB header:transferase
Chain: A: PDB Molecule:predicted protein;
PDBTitle: crystal structure of n. vectensis camkii-a hub
24c4gb5A_
not modelled 94.4 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of kfla4162 protein from kribbella flavida
25d3ebya1
not modelled 94.1 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
26c6of9G_
not modelled 94.1 18
PDB header:unknown function
Chain: G: PDB Molecule:camkii hub;
PDBTitle: structure of the chlamydamonas reinhardtii camkii hub homology domain
27d3ejva1
not modelled 93.7 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
28c4nhfF_
not modelled 93.6 13
PDB header:protein transport
Chain: F: PDB Molecule:trwg protein;
PDBTitle: crystal structure of the soluble domain of trwg type iv secretion2 machinery from bartonella grahamii
29c3gzrA_
not modelled 93.2 18
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold;
PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution
30c3bb9D_
not modelled 93.1 18
PDB header:unknown function
Chain: D: PDB Molecule:putative orphan protein;
PDBTitle: crystal structure of a putative ketosteroid isomerase (sfri_1973) from2 shewanella frigidimarina ncimb 400 at 1.80 a resolution
31c3soyA_
not modelled 93.1 8
PDB header:membrane protein
Chain: A: PDB Molecule:ntf2-like superfamily protein;
PDBTitle: nuclear transport factor 2 (ntf2-like) superfamily protein from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2
32c3f7sA_
not modelled 93.1 10
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized ntf2-like protein;
PDBTitle: crystal structure of a ntf2-like protein of unknown function (pp_4556)2 from pseudomonas putida kt2440 at 2.11 a resolution
33d3d9ra1
not modelled 92.9 18
Fold:Cystatin-like
Superfamily:NTF2-like
Family:ECA1476-like
34c3gwrA_
not modelled 92.8 12
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type
PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution
35c4lehA_
not modelled 92.6 16
PDB header:lyase
Chain: A: PDB Molecule:bile acid 7-alpha dehydratase, baie;
PDBTitle: crystal structure of a bile-acid 7-alpha dehydratase (closci_03134)2 from clostridium scindens atcc 35704 at 2.90 a resolution
36c2gbxF_
not modelled 92.5 9
PDB header:oxidoreductase
Chain: F: PDB Molecule:biphenyl 2,3-dioxygenase beta subunit;
PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl
37c3ub1C_
not modelled 92.0 9
PDB header:transport protein
Chain: C: PDB Molecule:orf13-like protein;
PDBTitle: ntf2 like protein involved in plasmid conjugation
38c3hx8A_
not modelled 91.8 11
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (np_103587.1) from2 mesorhizobium loti at 1.45 a resolution
39d2cc3a1
not modelled 91.5 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:VirB8-like
40c5i97C_
not modelled 91.2 17
PDB header:protein transport
Chain: C: PDB Molecule:conjugal transfer protein;
PDBTitle: structural analysis and inhibition of trae from the pkm101 type iv2 secretion system
41c4meiA_
not modelled 91.0 17
PDB header:protein transport
Chain: A: PDB Molecule:virb8 protein;
PDBTitle: crystal structure of a virb8 type iv secretion system machinery2 soluble domain from bartonella tribocorum
42d2b1xb1
not modelled 90.7 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
43c4hzbE_
not modelled 89.7 27
PDB header:hydrolase
Chain: E: PDB Molecule:putative periplasmic protein;
PDBTitle: crystal structure of the type vi semet effector-immunity complex tae3-2 tai3 from ralstonia pickettii
44d3e99a1
not modelled 89.7 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
45d3cnxa1
not modelled 88.5 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SAV4671-like
46d2bhma1
not modelled 86.6 18
Fold:Cystatin-like
Superfamily:NTF2-like
Family:VirB8-like
47c3k7cC_
not modelled 85.3 21
PDB header:protein binding
Chain: C: PDB Molecule:putative ntf2-like transpeptidase;
PDBTitle: crystal structure of putative ntf2-like transpeptidase (np_281412.1)2 from campylobacter jejuni at 2.00 a resolution
48c2qguA_
not modelled 85.2 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable signal peptide protein;
PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89
49c2bhmE_
not modelled 85.2 16
PDB header:bacterial protein
Chain: E: PDB Molecule:type iv secretion system protein virb8;
PDBTitle: crystal structure of virb8 from brucella suis
50d3b7ca1
not modelled 84.1 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
51d2r4ia1
not modelled 83.2 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:CHU142-like
52c5ig0A_
not modelled 82.4 11
PDB header:transferase
Chain: A: PDB Molecule:camk/camk2 protein kinase;
PDBTitle: crystal structure of s. rosetta camkii hub
53c4fczB_
not modelled 81.7 13
PDB header:transport protein
Chain: B: PDB Molecule:toluene-tolerance protein;
PDBTitle: crystal structure of toluene-tolerance protein from pseudomonas putida2 (strain kt2440), northeast structural genomics consortium (nesg)3 target ppr99
54d3blza1
not modelled 81.6 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Sbal0622-like
55c5uwaB_
not modelled 81.5 13
PDB header:transport protein
Chain: B: PDB Molecule:probable phospholipid-binding protein mlac;
PDBTitle: structure of e. coli phospholipid binding protein mlac
56d3bb9a1
not modelled 79.9 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
57c2rsxA_
not modelled 76.2 19
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:uncharacterized protein yoeb;
PDBTitle: solution structure of isea, an inhibitor protein of dl-endopeptidases2 from bacillus subtilis
58c3fkaD_
not modelled 62.2 25
PDB header:unknown function
Chain: D: PDB Molecule:uncharacterized ntf-2 like protein;
PDBTitle: crystal structure of a ntf-2 like protein of unknown function2 (spo1084) from silicibacter pomeroyi dss-3 at 1.69 a resolution
59c3hzpA_
not modelled 60.4 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of ntf2-like protein of unknown function mn2a_05052 from prochlorococcus marinus (yp_291699.1) from prochlorococcus sp.3 natl2a at 1.40 a resolution
60c3kspA_
not modelled 59.0 9
PDB header:unknown function
Chain: A: PDB Molecule:calcium/calmodulin-dependent kinase ii association domain;
PDBTitle: crystal structure of a putative ca/calmodulin-dependent kinase ii2 association domain (exig_1688) from exiguobacterium sibiricum 255-153 at 2.59 a resolution
61c3ke7A_
not modelled 57.4 14
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (yp_001303366.1)2 from parabacteroides distasonis atcc 8503 at 1.45 a resolution
62d1ulib_
not modelled 55.7 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
63c3gzxB_
not modelled 50.6 19
PDB header:oxidoreductase
Chain: B: PDB Molecule:biphenyl dioxygenase subunit beta;
PDBTitle: crystal structure of the biphenyl dioxygenase in complex with biphenyl2 from comamonas testosteroni sp. strain b-356
64d2rcda1
not modelled 48.2 19
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
65c6bjuD_
not modelled 45.9 18
PDB header:unknown function
Chain: D: PDB Molecule:atzh;
PDBTitle: the structure of atzh: a little known member of the atrazine breakdown2 pathway
66c3dukD_
not modelled 44.9 21
PDB header:unknown function
Chain: D: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of a ntf2-like protein of unknown function2 (mfla_0564) from methylobacillus flagellatus kt at 2.200 a resolution
67c3fsdA_
not modelled 43.4 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function in nutrient uptake;
PDBTitle: crystal structure of ntf2-like protein of unknown function in nutrient2 uptake (yp_427473.1) from rhodospirillum rubrum atcc 11170 at 1.70 a3 resolution
68d1wqlb1
not modelled 42.7 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
69d1vqqa1
not modelled 42.1 15
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Penicillin binding protein 2a (PBP2A), N-terminal domain
70c1mwuA_
not modelled 38.8 13
PDB header:biosynthetic protein
Chain: A: PDB Molecule:penicillin-binding protein 2a;
PDBTitle: structure of methicillin acyl-penicillin binding protein 2a from2 methicillin resistant staphylococcus aureus strain 27r at 2.60 a3 resolution.
71c4r4gA_
not modelled 34.5 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative lipoprotein ycda;
PDBTitle: crystal structure of a putative lipoprotein (ycda) from bacillus2 subtilis subsp. subtilis str. 168 at 2.62 a resolution
72c1zeqX_
not modelled 32.8 15
PDB header:metal binding protein
Chain: X: PDB Molecule:cation efflux system protein cusf;
PDBTitle: 1.5 a structure of apo-cusf residues 6-88 from escherichia2 coli
73c4o3vA_
not modelled 25.2 13
PDB header:protein transport
Chain: A: PDB Molecule:virb8-like protein of type iv secretion system;
PDBTitle: crystal structure of a virb8-like protein of type iv secretion system2 from rickettsia typhi
74d2owpa1
not modelled 25.2 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BxeB1374-like
75c2l9uB_
not modelled 25.0 23
PDB header:membrane protein
Chain: B: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
76c5ve9C_
not modelled 24.6 38
PDB header:protein binding
Chain: C: PDB Molecule:microtubule-actin cross-linking factor 1, isoforms 1/2/3/5;
PDBTitle: structure of hacf7 ef1-ef2-gar domains
77d2bmob1
not modelled 24.5 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
78c2l9uA_
not modelled 23.5 23
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3;
PDBTitle: spatial structure of dimeric erbb3 transmembrane domain
79c4ce4i_
not modelled 23.0 14
PDB header:ribosome
Chain: I: PDB Molecule:mrpl9;
PDBTitle: 39s large subunit of the porcine mitochondrial ribosome
80d1v5ra1
not modelled 22.9 38
Fold:N domain of copper amine oxidase-like
Superfamily:GAS2 domain-like
Family:GAS2 domain
81c2ml6A_
not modelled 17.7 47
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of protein zp_02069618.1 from bacteroides uniformis atcc2 8492
82c5up5A_
not modelled 15.8 29
PDB header:de novo protein
Chain: A: PDB Molecule:ehee_rd1_0284;
PDBTitle: solution structure of the de novo mini protein ehee_rd1_0284
83c4ouqA_
not modelled 15.3 37
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4783 family protein (bf1468) from2 bacteroides fragilis ych46 at 1.55 a resolution
84c4orlA_
not modelled 14.9 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf4783 family protein (bacova_04304) from2 bacteroides ovatus atcc 8483 at 1.40 a resolution
85d2gxfa1
not modelled 14.1 22
Fold:Cystatin-like
Superfamily:NTF2-like
Family:YybH-like
86c3i0uA_
not modelled 12.9 27
PDB header:lyase
Chain: A: PDB Molecule:phosphothreonine lyase ospf;
PDBTitle: structure of the type iii effector/phosphothreonine lyase ospf from2 shigella flexneri
87c2z8nB_
not modelled 11.8 22
PDB header:lyase
Chain: B: PDB Molecule:27.5 kda virulence protein;
PDBTitle: structural basis for the catalytic mechanism of phosphothreonine lyase
88c2l55A_
not modelled 11.5 20
PDB header:metal binding protein
Chain: A: PDB Molecule:silb,silver efflux protein, mfp component of the three
PDBTitle: solution structure of the c-terminal domain of silb from cupriavidus2 metallidurans
89c5djqO_
not modelled 11.3 29
PDB header:oxidoreductase
Chain: O: PDB Molecule:putative uncharacterized protein;
PDBTitle: the structure of cbb3 cytochrome oxidase.
90c5djqP_
not modelled 11.3 29
PDB header:oxidoreductase
Chain: P: PDB Molecule:putative uncharacterized protein;
PDBTitle: the structure of cbb3 cytochrome oxidase.
91c5djqN_
not modelled 11.3 29
PDB header:oxidoreductase
Chain: N: PDB Molecule:putative uncharacterized protein;
PDBTitle: the structure of cbb3 cytochrome oxidase.
92c5djqQ_
not modelled 11.3 29
PDB header:oxidoreductase
Chain: Q: PDB Molecule:putative uncharacterized protein;
PDBTitle: the structure of cbb3 cytochrome oxidase.
93c2micA_
not modelled 10.8 24
PDB header:membrane protein
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 16;
PDBTitle: nmr structure of p75 transmembrane domain in dpc micelles
94c2micB_
not modelled 10.8 24
PDB header:membrane protein
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 16;
PDBTitle: nmr structure of p75 transmembrane domain in dpc micelles
95c5ts4A_
not modelled 9.5 14
PDB header:de novo protein
Chain: A: PDB Molecule:denovo ntf2;
PDBTitle: crystal structure of a de novo designed protein with curved beta-sheet
96c6f0kA_
not modelled 8.7 11
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
97d1o7nb_
not modelled 8.2 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
98d2cw9a1
not modelled 7.7 5
Fold:Cystatin-like
Superfamily:NTF2-like
Family:TIM44-like
99c4y4vB_
not modelled 6.8 8
PDB header:hydrolase
Chain: B: PDB Molecule:conserved hypothetical secreted protein;
PDBTitle: structure of helicobacter pylori csd6 in the d-ala-bound state

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below