Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3493c_(-)_3911126_3911854
DateFri Aug 9 18:20:17 BST 2019
Unique Job IDe318f6fed4844f99
SequenceVAADTGVAGG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:50.293 Y:39.542 Z:33.727
Model (left) based on template d3d9ra1
Top template information
Fold:Cystatin-like
Superfamily:NTF2-like
Family:ECA1476-like
Confidence and coverage
Confidence: 96.7% Coverage: 50%
122 residues ( 50% of your sequence) have been modelled with 96.7% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d3d9ra1
96.7 7
Fold:Cystatin-like
Superfamily:NTF2-like
Family:ECA1476-like
2c5cnlA_
96.5 8
PDB header:protein transport
Chain: A: PDB Molecule:icml-like;
PDBTitle: crystal structure of an icml-like type iv secretion system protein2 (lpg0120) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1 at 2.65 a resolution
3c3wz4F_
96.1 11
PDB header:unknown function
Chain: F: PDB Molecule:doti;
PDBTitle: structure of the periplasmic domain of doti (crystal form i)
4c3wz3A_
96.0 9
PDB header:unknown function
Chain: A: PDB Molecule:tram protein;
PDBTitle: structure of a periplasmic fragment of tram
5c3robC_
95.7 9
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized conserved protein;
PDBTitle: the crystal structure of a conserved protein from planctomyces2 limnophilus dsm 3776
6c5u9oD_
95.3 12
PDB header:cell cycle
Chain: D: PDB Molecule:plastid division protein cdp1, chloroplastic,plastid
PDBTitle: cocrystal structure of the intermembrane space region of the plastid2 division proteins parc6 and pdv1
7c3hx8A_
94.5 11
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (np_103587.1) from2 mesorhizobium loti at 1.45 a resolution
8c3a76B_
93.6 9
PDB header:lyase
Chain: B: PDB Molecule:gamma-hexachlorocyclohexane dehydrochlorinase;
PDBTitle: the crystal structure of lina
9c5i97C_
91.8 13
PDB header:protein transport
Chain: C: PDB Molecule:conjugal transfer protein;
PDBTitle: structural analysis and inhibition of trae from the pkm101 type iv2 secretion system
10d2ux0a1
91.7 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
11c3h51A_
91.1 10
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin dependent protein kinase ii
PDBTitle: crystal structure of putative calcium/calmodulin dependent protein2 kinase ii association domain (np_636218.1) from xanthomonas3 campestris at 1.70 a resolution
12d2f86b1
90.8 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
13d2cc3a1
90.8 14
Fold:Cystatin-like
Superfamily:NTF2-like
Family:VirB8-like
14d3stda_
89.5 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
15c5d9rA_
89.4 10
PDB header:biosynthetic protein
Chain: A: PDB Molecule:protein accumulation and replication of chloroplasts 6,
PDBTitle: crystal structure of a conserved domain in the intermembrane space2 region of the plastid division protein arc6
16c4nhfF_
88.0 14
PDB header:protein transport
Chain: F: PDB Molecule:trwg protein;
PDBTitle: crystal structure of the soluble domain of trwg type iv secretion2 machinery from bartonella grahamii
17c5uwaB_
87.9 26
PDB header:transport protein
Chain: B: PDB Molecule:probable phospholipid-binding protein mlac;
PDBTitle: structure of e. coli phospholipid binding protein mlac
18d3ebya1
87.6 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
19d3b8la1
86.0 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
20c4ovmE_
85.9 8
PDB header:unknown function
Chain: E: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: crystal structure of sgcj protein from streptomyces carzinostaticus
21c3gzrA_
not modelled 85.2 6
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein with a ntf2-like fold;
PDBTitle: crystal structure of an uncharacterized protein with a cystatin-like2 fold (cc_2572) from caulobacter vibrioides at 1.40 a resolution
22c5ig4A_
not modelled 84.4 12
PDB header:transferase
Chain: A: PDB Molecule:predicted protein;
PDBTitle: crystal structure of n. vectensis camkii-a hub
23d1hkxa_
not modelled 82.6 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Association domain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
24c5ig5E_
not modelled 82.1 9
PDB header:transferase
Chain: E: PDB Molecule:camkii-b hub;
PDBTitle: crystal structure of n. vectensis camkii-b hub at ph 4.2
25d3cu3a1
not modelled 80.4 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
26c4i4kB_
not modelled 78.5 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein sgcj;
PDBTitle: streptomyces globisporus c-1027 9-membered enediyne conserved protein2 sgce6
27d2rfra1
not modelled 77.2 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
28c3soyA_
not modelled 75.5 13
PDB header:membrane protein
Chain: A: PDB Molecule:ntf2-like superfamily protein;
PDBTitle: nuclear transport factor 2 (ntf2-like) superfamily protein from2 salmonella enterica subsp. enterica serovar typhimurium str. lt2
29c3bb9D_
not modelled 74.1 8
PDB header:unknown function
Chain: D: PDB Molecule:putative orphan protein;
PDBTitle: crystal structure of a putative ketosteroid isomerase (sfri_1973) from2 shewanella frigidimarina ncimb 400 at 1.80 a resolution
30d3ef8a1
not modelled 71.1 8
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
31d3bb9a1
not modelled 68.2 5
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
32c4fczB_
not modelled 67.3 23
PDB header:transport protein
Chain: B: PDB Molecule:toluene-tolerance protein;
PDBTitle: crystal structure of toluene-tolerance protein from pseudomonas putida2 (strain kt2440), northeast structural genomics consortium (nesg)3 target ppr99
33c3f7sA_
not modelled 66.6 6
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized ntf2-like protein;
PDBTitle: crystal structure of a ntf2-like protein of unknown function (pp_4556)2 from pseudomonas putida kt2440 at 2.11 a resolution
34c4lehA_
not modelled 66.5 7
PDB header:lyase
Chain: A: PDB Molecule:bile acid 7-alpha dehydratase, baie;
PDBTitle: crystal structure of a bile-acid 7-alpha dehydratase (closci_03134)2 from clostridium scindens atcc 35704 at 2.90 a resolution
35c4meiA_
not modelled 65.1 12
PDB header:protein transport
Chain: A: PDB Molecule:virb8 protein;
PDBTitle: crystal structure of a virb8 type iv secretion system machinery2 soluble domain from bartonella tribocorum
36c2bhmE_
not modelled 64.3 14
PDB header:bacterial protein
Chain: E: PDB Molecule:type iv secretion system protein virb8;
PDBTitle: crystal structure of virb8 from brucella suis
37c6of9G_
not modelled 59.1 14
PDB header:unknown function
Chain: G: PDB Molecule:camkii hub;
PDBTitle: structure of the chlamydamonas reinhardtii camkii hub homology domain
38d2r4ia1
not modelled 58.3 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:CHU142-like
39d3blza1
not modelled 57.5 12
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Sbal0622-like
40d1idpa_
not modelled 49.8 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Scytalone dehydratase
41d2bhma1
not modelled 49.6 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:VirB8-like
42d2chca1
not modelled 45.7 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
43c2qguA_
not modelled 44.4 21
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable signal peptide protein;
PDBTitle: three-dimensional structure of the phospholipid-binding protein from2 ralstonia solanacearum q8xv73_ralsq in complex with a phospholipid at3 the resolution 1.53 a. northeast structural genomics consortium4 target rsr89
44d3b7ca1
not modelled 43.9 10
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SO0125-like
45d2rgqa1
not modelled 42.8 13
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Rv3472-like
46c5ig0A_
not modelled 42.1 12
PDB header:transferase
Chain: A: PDB Molecule:camk/camk2 protein kinase;
PDBTitle: crystal structure of s. rosetta camkii hub
47c4hzbE_
not modelled 41.9 7
PDB header:hydrolase
Chain: E: PDB Molecule:putative periplasmic protein;
PDBTitle: crystal structure of the type vi semet effector-immunity complex tae3-2 tai3 from ralstonia pickettii
48c4o3vA_
not modelled 34.2 15
PDB header:protein transport
Chain: A: PDB Molecule:virb8-like protein of type iv secretion system;
PDBTitle: crystal structure of a virb8-like protein of type iv secretion system2 from rickettsia typhi
49c4r4gA_
not modelled 31.9 8
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative lipoprotein ycda;
PDBTitle: crystal structure of a putative lipoprotein (ycda) from bacillus2 subtilis subsp. subtilis str. 168 at 2.62 a resolution
50c3k7cC_
not modelled 29.5 13
PDB header:protein binding
Chain: C: PDB Molecule:putative ntf2-like transpeptidase;
PDBTitle: crystal structure of putative ntf2-like transpeptidase (np_281412.1)2 from campylobacter jejuni at 2.00 a resolution
51d3cnxa1
not modelled 26.6 11
Fold:Cystatin-like
Superfamily:NTF2-like
Family:SAV4671-like
52d2b1xb1
not modelled 26.2 5
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
53c4gb5A_
not modelled 22.0 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of kfla4162 protein from kribbella flavida
54c2ls01_
not modelled 21.3 22
PDB header:hydrolase
Chain: 1: PDB Molecule:zoocin a endopeptidase;
PDB Fragment:unp residues 170-285; PDBTitle: solution structure of the target recognition domain of zoocin a
55c4a4iA_
not modelled 20.8 13
PDB header:rna binding protein
Chain: A: PDB Molecule:protein lin-28 homolog b;
PDBTitle: crystal structure of the human lin28b cold shock domain
56c6f0kA_
not modelled 17.2 16
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
57c5up5A_
not modelled 15.0 54
PDB header:de novo protein
Chain: A: PDB Molecule:ehee_rd1_0284;
PDBTitle: solution structure of the de novo mini protein ehee_rd1_0284
58c3efyB_
not modelled 14.5 27
PDB header:cell cycle
Chain: B: PDB Molecule:cif (cell cycle inhibiting factor);
PDBTitle: structure of the cyclomodulin cif from pathogenic2 escherichia coli
59c6nhyA_
not modelled 14.1 16
PDB header:immune system
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 mutant2 (g217y) - trimer only
60c6nhyC_
not modelled 14.1 16
PDB header:immune system
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 mutant2 (g217y) - trimer only
61c6nhyB_
not modelled 14.1 16
PDB header:immune system
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 mutant2 (g217y) - trimer only
62c3gwrA_
not modelled 13.9 12
PDB header:protein binding
Chain: A: PDB Molecule:putative calcium/calmodulin-dependent protein kinase type
PDBTitle: crystal structure of putative calcium/calmodulin-dependent protein2 kinase type ii association domain (yp_315894.1) from thiobacillus3 denitrificans atcc 25259 at 2.00 a resolution
63c3ke7A_
not modelled 13.2 3
PDB header:isomerase
Chain: A: PDB Molecule:putative ketosteroid isomerase;
PDBTitle: crystal structure of putative ketosteroid isomerase (yp_001303366.1)2 from parabacteroides distasonis atcc 8503 at 1.45 a resolution
64c5x9kA_
not modelled 12.0 19
PDB header:isomerase
Chain: A: PDB Molecule:austinol synthesis protein h;
PDBTitle: strucutre of aush from aspergillus nidulans
65c3kspA_
not modelled 11.4 7
PDB header:unknown function
Chain: A: PDB Molecule:calcium/calmodulin-dependent kinase ii association domain;
PDBTitle: crystal structure of a putative ca/calmodulin-dependent kinase ii2 association domain (exig_1688) from exiguobacterium sibiricum 255-153 at 2.59 a resolution
66c3j6vI_
not modelled 10.6 26
PDB header:ribosome
Chain: I: PDB Molecule:28s ribosomal protein s9, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
67d2gxfa1
not modelled 10.4 16
Fold:Cystatin-like
Superfamily:NTF2-like
Family:YybH-like
68d1jz8a1
not modelled 10.3 20
Fold:Immunoglobulin-like beta-sandwich
Superfamily:beta-Galactosidase/glucuronidase domain
Family:beta-Galactosidase/glucuronidase domain
69c3klqB_
not modelled 9.9 16
PDB header:cell adhesion
Chain: B: PDB Molecule:putative pilus anchoring protein;
PDBTitle: crystal structure of the minor pilin fctb from streptococcus pyogenes2 90/306s
70c2rujA_
not modelled 9.5 30
PDB header:protein binding
Chain: A: PDB Molecule:stress-activated map kinase-interacting protein 1;
PDBTitle: solution structure of mtsl spin-labeled schizosaccharomyces pombe sin12 crim domain
71c1nm3B_
not modelled 9.4 21
PDB header:electron transport
Chain: B: PDB Molecule:protein hi0572;
PDBTitle: crystal structure of heamophilus influenza hybrid-prx5
72d2cw9a1
not modelled 8.9 9
Fold:Cystatin-like
Superfamily:NTF2-like
Family:TIM44-like
73c5wdaL_
not modelled 8.6 8
PDB header:protein transport
Chain: L: PDB Molecule:general secretion pathway protein g;
PDBTitle: structure of the pulg pseudopilus
74c3r2cJ_
not modelled 8.4 20
PDB header:transcription/rna
Chain: J: PDB Molecule:30s ribosomal protein s10;
PDBTitle: crystal structure of antitermination factors nusb and nuse in complex2 with boxa rna
75c2kd2A_
not modelled 8.2 36
PDB header:apoptosis
Chain: A: PDB Molecule:fas apoptotic inhibitory molecule 1;
PDBTitle: nmr structure of faim-ctd
76c5wqhE_
not modelled 7.8 14
PDB header:isomerase
Chain: E: PDB Molecule:isomerase trt14;
PDBTitle: structure of fungal meroterpenoid isomerase trt14 complexed with2 substrate analog and endo-terretonin d
77c2ytyA_
not modelled 7.8 5
PDB header:rna binding protein
Chain: A: PDB Molecule:cold shock domain-containing protein e1;
PDBTitle: solution structure of the fourth cold-shock domain of the human2 kiaa0885 protein (unr protein)
78c2gbxF_
not modelled 7.6 6
PDB header:oxidoreductase
Chain: F: PDB Molecule:biphenyl 2,3-dioxygenase beta subunit;
PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl
79c6nhwB_
not modelled 7.5 16
PDB header:immune system
Chain: B: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
80c6nhwF_
not modelled 7.5 16
PDB header:immune system
Chain: F: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
81c6nhwD_
not modelled 7.5 16
PDB header:immune system
Chain: D: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
82c6nhwE_
not modelled 7.5 16
PDB header:immune system
Chain: E: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
83c6nhwC_
not modelled 7.5 16
PDB header:immune system
Chain: C: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
84c6nhwA_
not modelled 7.5 16
PDB header:immune system
Chain: A: PDB Molecule:tumor necrosis factor receptor superfamily member 10b;
PDBTitle: structure of the transmembrane domain of the death receptor 5 - dimer2 of trimer
85c6oegY_
not modelled 7.3 13
PDB header:translocase
Chain: Y: PDB Molecule:type iv secretion system apparatus protein cagx;
PDBTitle: structure of cagx from a cryo-em reconstruction of a t4ss
86c2n6uA_
not modelled 7.1 29
PDB header:unknown function
Chain: A: PDB Molecule:astexin2-dc4;
PDBTitle: solution study of astexin2-dc4
87d2iafa1
not modelled 7.0 23
Fold:FwdE/GAPDH domain-like
Superfamily:Serine metabolism enzymes domain
Family:Serine dehydratase beta chain-like
88c2lcnA_
not modelled 6.8 41
PDB header:membrane protein
Chain: A: PDB Molecule:walp19-p10 peptide;
PDBTitle: 1h and 15n assignments of walp19-p10 peptide in sds micelles
89d3ejva1
not modelled 6.7 17
Fold:Cystatin-like
Superfamily:NTF2-like
Family:BaiE/LinA-like
90d2h1ta1
not modelled 6.1 13
Fold:Spiral beta-roll
Superfamily:PA1994-like
Family:PA1994-like
91c1xt5A_
not modelled 6.0 19
PDB header:immune system
Chain: A: PDB Molecule:variable region-containing chitin-binding
PDBTitle: crystal structure of vcbp3, domain 1, from branchiostoma2 floridae
92c2lcoA_
not modelled 5.9 47
PDB header:membrane protein
Chain: A: PDB Molecule:walp19-p8 peptide;
PDBTitle: 1h and 15n assignments of walp19-p8 peptide in sds micelles
93d1omha_
not modelled 5.9 3
Fold:Origin of replication-binding domain, RBD-like
Superfamily:Origin of replication-binding domain, RBD-like
Family:Relaxase domain
94d2nqra1
not modelled 5.8 9
Fold:beta-clip
Superfamily:MoeA C-terminal domain-like
Family:MoeA C-terminal domain-like
95c3dukD_
not modelled 5.6 16
PDB header:unknown function
Chain: D: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of a ntf2-like protein of unknown function2 (mfla_0564) from methylobacillus flagellatus kt at 2.200 a resolution
96c1cwxA_
not modelled 5.4 56
PDB header:viral protein
Chain: A: PDB Molecule:hepatitis c virus capsid protein;
PDBTitle: solution structure of the hepatitis c virus n-terminal2 capsid protein 2-45 [c-hcv(2-45)]
97c2k9yB_
not modelled 5.4 19
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
98c2k9yA_
not modelled 5.4 19
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
99d2pila_
not modelled 5.3 16
Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin

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Transmembrane helix prediction 

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