Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3497c_(mce4C)_3916062_3917135
DateFri Aug 9 18:20:17 BST 2019
Unique Job ID081a595261895b89
SequenceLLNRKPSSKH ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:41.038 Y:36.496 Z:68.417
Model (left) based on template c6ic4C_
Top template information
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
Confidence and coverage
Confidence: 99.9% Coverage: 35%
126 residues ( 35% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
283 residues ( 79%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ic4C_



99.9 30
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
2c5uw8C_



99.6 21
PDB header:transport protein
Chain: C: PDB Molecule:probable phospholipid abc transporter-binding protein mlad;
PDBTitle: structure of e. coli mce protein mlad, core mce domain
3c5uvnC_



99.4 16
PDB header:transport protein
Chain: C: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
4c5uvnF_



99.4 16
PDB header:transport protein
Chain: F: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
5c5uvnB_



99.4 16
PDB header:transport protein
Chain: B: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
6c5uvnD_



99.4 16
PDB header:transport protein
Chain: D: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
7c5uvnA_



99.4 16
PDB header:transport protein
Chain: A: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
8c5uvnE_



99.4 16
PDB header:transport protein
Chain: E: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
9c3g67A_



92.9 10
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima
10c1qu7A_



89.5 10
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i;
PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor
11c6b7nC_



85.9 15
PDB header:viral protein
Chain: C: PDB Molecule:spike protein;
PDBTitle: cryo-electron microscopy structure of porcine delta coronavirus spike2 protein in the pre-fusion state
12c6ezvX_



84.5 11
PDB header:toxin
Chain: X: PDB Molecule:non-hemolytic enterotoxin lytic component l1;
PDBTitle: the cytotoxin maka from vibrio cholerae
13c3lnrA_



83.6 12
PDB header:signaling protein
Chain: A: PDB Molecule:aerotaxis transducer aer2;
PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2
14c2ch7A_



83.4 13
PDB header:chemotaxis
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima
15c2j5uB_



80.6 12
PDB header:cell shape regulation
Chain: B: PDB Molecule:mrec protein;
PDBTitle: mrec lysteria monocytogenes
16c2ieqC_



80.0 14
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein
17c3zx6A_



77.7 13
PDB header:signaling
Chain: A: PDB Molecule:hamp, methyl-accepting chemotaxis protein i;
PDBTitle: structure of hamp(af1503)-tsr fusion - hamp (a291v) mutant
18c6e6aB_



76.9 16
PDB header:protein binding
Chain: B: PDB Molecule:inclusion membrane protein a;
PDBTitle: triclinic crystal form of inca g144a point mutant
19c2d4yA_



75.9 16
PDB header:structural protein
Chain: A: PDB Molecule:flagellar hook-associated protein 1;
PDBTitle: crystal structure of a 49k fragment of hap1 (flgk)
20c6gajA_



75.5 14
PDB header:viral protein
Chain: A: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus sigma1 coiled coil tail (iodide)
21c3ojaB_



not modelled 72.9 14
PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex
22c1kmiZ_



not modelled 71.7 16
PDB header:signaling protein
Chain: Z: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of an e.coli chemotaxis protein, chez
23c4tkoB_



not modelled 71.5 15
PDB header:membrane protein
Chain: B: PDB Molecule:emra;
PDBTitle: structure of the periplasmic adaptor protein emra
24c5xbjA_



not modelled 69.4 10
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar hook-associated protein flgk;
PDBTitle: the structure of the flagellar hook junction protein hap1 (flgk) from2 campylobacter jejuni
25c1deqO_



not modelled 68.6 8
PDB header:blood clotting
Chain: O: PDB Molecule:fibrinogen (beta chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
26c1deqF_



not modelled 68.1 12
PDB header:blood clotting
Chain: F: PDB Molecule:fibrinogen (gamma chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
27c1ei3C_



not modelled 67.9 7
PDB header:blood clotting
Chain: C: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
28d1st6a4



not modelled 66.8 13
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
29c5zuvB_



not modelled 65.7 16
PDB header:viral protein, inhibitor
Chain: B: PDB Molecule:spike glycoprotein,spike glycoprotein,inhibitor ek1;
PDBTitle: crystal structure of the human coronavirus 229e hr1 motif in complex2 with pan-covs inhibitor ek1
30c4ut1A_



not modelled 65.2 14
PDB header:motor protein
Chain: A: PDB Molecule:flagellar hook-associated protein;
PDBTitle: the structure of the flagellar hook junction protein flgk2 from burkholderia pseudomallei
31c5lp5F_



not modelled 62.0 13
PDB header:hydrolase/antibiotic
Chain: F: PDB Molecule:rod shape-determining protein (mrec);
PDBTitle: complex between penicillin-binding protein (pbp2) and mrec from2 helicobacter pylori
32c1ei3E_



not modelled 59.9 12
PDB header:blood clotting
Chain: E: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
33c2wpqA_



not modelled 59.2 5
PDB header:membrane protein
Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment;
PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (sadak3, in-2 register fusion)
34c6gapB_



not modelled 58.3 12
PDB header:viral protein
Chain: B: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t3d reovirus sigma1 coiled coil tail and body
35c5n76C_



not modelled 56.0 18
PDB header:nickel-binding protein
Chain: C: PDB Molecule:coot;
PDBTitle: crystal structure of the apo-form of the co dehydrogenase accessory2 protein coot from rhodospirillum rubrum
36c5szsC_



not modelled 55.7 13
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: glycan shield and epitope masking of a coronavirus spike protein2 observed by cryo-electron microscopy
37c2gl2B_



not modelled 54.9 13
PDB header:cell adhesion
Chain: B: PDB Molecule:adhesion a;
PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,y69g) of2 bacterial adhesin fada
38c2qihA_



not modelled 53.1 9
PDB header:cell adhesion
Chain: A: PDB Molecule:protein uspa1;
PDBTitle: crystal structure of 527-665 fragment of uspa1 protein from moraxella2 catarrhalis
39d1eq1a_



not modelled 52.5 17
Fold:Apolipophorin-III
Superfamily:Apolipophorin-III
Family:Apolipophorin-III
40d1rh5b_



not modelled 51.1 17
Fold:Single transmembrane helix
Superfamily:Preprotein translocase SecE subunit
Family:Preprotein translocase SecE subunit
41c3cwgA_



not modelled 50.9 11
PDB header:transcription
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: unphosphorylated mouse stat3 core fragment
42c5x5bB_



not modelled 48.0 10
PDB header:viral protein
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: prefusion structure of sars-cov spike glycoprotein, conformation 2
43c2vs0B_



not modelled 46.6 13
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
44c4iogD_



not modelled 46.5 11
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
45c3j99M_



not modelled 46.3 13
PDB header:hydrolase
Chain: M: PDB Molecule:synaptosomal-associated protein 25;
PDBTitle: structure of 20s supercomplex determined by single particle2 cryoelectron microscopy (state iiib)
46c4abxB_



not modelled 45.0 15
PDB header:dna binding protein
Chain: B: PDB Molecule:dna repair protein recn;
PDBTitle: crystal structure of deinococcus radiodurans recn coiled-2 coil domain
47d2cp6a1



not modelled 44.8 20
Fold:SH3-like barrel
Superfamily:Cap-Gly domain
Family:Cap-Gly domain
48c4qkvB_



not modelled 43.1 17
PDB header:transcription
Chain: B: PDB Molecule:polymerase i and transcript release factor;
PDBTitle: crystal structure of the mouse cavin1 hr1 domain
49c5xlrC_



not modelled 42.8 10
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: structure of sars-cov spike glycoprotein
50d1szia_



not modelled 42.4 17
Fold:Four-helical up-and-down bundle
Superfamily:Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
Family:Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
51c5zhyA_



not modelled 41.5 8
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, spike glycoprotein;
PDBTitle: structural characterization of the hcov-229e fusion core
52c6nzkB_



not modelled 41.2 15
PDB header:viral protein
Chain: B: PDB Molecule:spike surface glycoprotein;
PDBTitle: structural basis for human coronavirus attachment to sialic acid2 receptors
53c1cz5A_



not modelled 39.8 10
PDB header:hydrolase
Chain: A: PDB Molecule:vcp-like atpase;
PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma)
54c5u0pU_



not modelled 38.2 9
PDB header:transcription
Chain: U: PDB Molecule:mediator complex subunit 21;
PDBTitle: cryo-em structure of the transcriptional mediator
55c6cs2A_



not modelled 37.0 10
PDB header:viral protein/hydrolase
Chain: A: PDB Molecule:spike glycoprotein,fibritin;
PDBTitle: sars spike glycoprotein - human ace2 complex, stabilized variant, all2 ace2-bound particles
56c3vkhA_



not modelled 36.4 12
PDB header:motor protein
Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic;
PDBTitle: x-ray structure of a functional full-length dynein motor domain
57c1bf5A_



not modelled 34.4 6
PDB header:gene regulation/dna
Chain: A: PDB Molecule:signal transducer and activator of transcription 1-
PDBTitle: tyrosine phosphorylated stat-1/dna complex
58c3qr8A_



not modelled 33.1 15
PDB header:viral protein
Chain: A: PDB Molecule:baseplate assembly protein v;
PDBTitle: crystal structure of the bacteriophage p2 membrane-piercing protein2 gpv
59c5i08A_



not modelled 33.0 14
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, envelope glycoprotein chimera;
PDBTitle: prefusion structure of a human coronavirus spike protein
60d1st6a3



not modelled 32.2 10
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
61c3jclC_



not modelled 32.0 13
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: cryo-electron microscopy structure of a coronavirus spike glycoprotein2 trimer
62c6nb3B_



not modelled 31.7 14
PDB header:virus
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: mers-cov complex with human neutralizing lca60 antibody fab fragment2 (state 1)
63d1h9ra2



not modelled 30.5 12
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
64c6ewyA_



not modelled 30.2 10
PDB header:structural protein
Chain: A: PDB Molecule:peptidoglycan endopeptidase ripa;
PDBTitle: ripa peptidoglycan hydrolase (rv1477, mycobacterium tuberculosis) n-2 terminal domain
65c5wrgB_



not modelled 28.5 10
PDB header:virus like particle
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: sars-cov spike glycoprotein
66d1wa8a1



not modelled 28.1 13
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
67c1yvlB_



not modelled 27.9 9
PDB header:signaling protein
Chain: B: PDB Molecule:signal transducer and activator of transcription
PDBTitle: structure of unphosphorylated stat1
68d1h9ma2



not modelled 27.4 20
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
69c4xa3A_



not modelled 26.6 11
PDB header:motor protein
Chain: A: PDB Molecule:gp7-myh7(1361-1425)-eb1 chimera protein;
PDBTitle: crystal structure of the coiled-coil surrounding skip 2 of myh7
70c2qf4A_



not modelled 26.3 17
PDB header:structural protein
Chain: A: PDB Molecule:cell shape determining protein mrec;
PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form)
71d1guta_



not modelled 25.8 16
Fold:OB-fold
Superfamily:MOP-like
Family:Molybdate/tungstate binding protein MOP
72c3gvmA_



not modelled 25.4 13
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
73c5yfpG_



not modelled 25.3 9
PDB header:exocytosis
Chain: G: PDB Molecule:exocyst complex component exo70;
PDBTitle: cryo-em structure of the exocyst complex
74c5j9qH_



not modelled 24.2 10
PDB header:transferase
Chain: H: PDB Molecule:chromatin modification-related protein yng2;
PDBTitle: crystal structure of the nua4 core complex
75c4lwsA_



not modelled 24.0 6
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
76c3zrwB_



not modelled 23.8 11
PDB header:signaling protein
Chain: B: PDB Molecule:af1503 protein, osmolarity sensor protein envz;
PDBTitle: the structure of the dimeric hamp-dhp fusion a291v mutant
77c3pe0B_



not modelled 23.7 10
PDB header:structural protein
Chain: B: PDB Molecule:plectin;
PDBTitle: structure of the central region of the plakin domain of plectin
78d1h9ma1



not modelled 23.6 24
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
79c3iv1F_



not modelled 23.3 16
PDB header:hydrolase
Chain: F: PDB Molecule:tumor susceptibility gene 101 protein;
PDBTitle: coiled-coil domain of tumor susceptibility gene 101
80c5ew5C_



not modelled 22.8 11
PDB header:hydrolase
Chain: C: PDB Molecule:colicin-e9;
PDBTitle: crystal structure of colicin e9 in complex with its immunity protein2 im9
81c1wyyB_



not modelled 22.5 16
PDB header:viral protein
Chain: B: PDB Molecule:e2 glycoprotein;
PDBTitle: post-fusion hairpin conformation of the sars coronavirus spike2 glycoprotein
82c4rh7A_



not modelled 22.1 13
PDB header:motor protein
Chain: A: PDB Molecule:green fluorescent protein/cytoplasmic dynein 2 heavy chain
PDBTitle: crystal structure of human cytoplasmic dynein 2 motor domain in2 complex with adp.vi
83c4s37F_



not modelled 21.9 30
PDB header:metal binding protein
Chain: F: PDB Molecule:phage baseplate protein;
PDBTitle: crystal structure of r2 pyocin membrane-piercing spike
84c2dq3A_



not modelled 21.8 15
PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase;
PDBTitle: crystal structure of aq_298
85c4qkwB_



not modelled 21.0 16
PDB header:signaling protein
Chain: B: PDB Molecule:muscle-related coiled-coil protein;
PDBTitle: crystal structure of the zebrafish cavin4a hr1 domain
86c5j65A_



not modelled 20.4 11
PDB header:toxin
Chain: A: PDB Molecule:pesticidal crystal protein cry6aa;
PDBTitle: crystal structure of trypsin activated cry6aa
87d1hcia4



not modelled 20.2 9
Fold:Spectrin repeat-like
Superfamily:Spectrin repeat
Family:Spectrin repeat
88c4modB_



not modelled 20.1 13
PDB header:viral protein
Chain: B: PDB Molecule:hr1 of s protein, linker, hr2 of s protein;
PDBTitle: structure of the mers-cov fusion core
89c3ghgK_



not modelled 20.0 9
PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen
90c2l8sA_



not modelled 19.6 8
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
91c4lwsB_



not modelled 19.5 11
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
92c3pltB_



not modelled 19.2 11
PDB header:structural protein
Chain: B: PDB Molecule:sphingolipid long chain base-responsive protein lsp1;
PDBTitle: crystal structure of lsp1 from saccharomyces cerevisiae
93d2cu6a1



not modelled 18.6 13
Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:PaaD-like
94c3ur1C_



not modelled 17.8 9
PDB header:immune system
Chain: C: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: the structure of a ternary complex between chea domains p4 and p5 with2 chew and with a truncated fragment of tm14, a chemoreceptor analog3 from thermotoga maritima.
95c5dmaA_



not modelled 17.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent dna helicase pcra;
PDBTitle: crystal structure of c-terminal tudor domain in pcra/uvrd helicase
96c4njlA_



not modelled 17.6 14
PDB header:viral protein
Chain: A: PDB Molecule:s protein;
PDBTitle: crystal structure of middle east respiratory syndrome coronavirus s22 protein fusion core
97c5b0oB_



not modelled 17.3 39
PDB header:hydrolase/motor protein
Chain: B: PDB Molecule:flagellum-specific atp synthase;
PDBTitle: structure of the flih-flii complex
98c3zbhC_



not modelled 16.5 12
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
99c2nrjA_



not modelled 16.5 14
PDB header:toxin
Chain: A: PDB Molecule:hbl b protein;
PDBTitle: crystal structure of hemolysin binding component from2 bacillus cereus

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Transmembrane helix prediction 

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