Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3498c_(mce4B)_3917125_3918177
DateFri Aug 9 18:20:17 BST 2019
Unique Job ID5d42bb844e85bd1f
SequenceMAGSGVPSHR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.172 Y:42.227 Z:68.181
Model (left) based on template c6ic4C_
Top template information
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
Confidence and coverage
Confidence: 99.9% Coverage: 37%
130 residues ( 37% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
290 residues ( 83%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ic4C_
99.9 28
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
2c5uw8C_
99.8 26
PDB header:transport protein
Chain: C: PDB Molecule:probable phospholipid abc transporter-binding protein mlad;
PDBTitle: structure of e. coli mce protein mlad, core mce domain
3c5uvnD_
99.5 21
PDB header:transport protein
Chain: D: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
4c5uvnE_
99.5 21
PDB header:transport protein
Chain: E: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
5c5uvnF_
99.5 21
PDB header:transport protein
Chain: F: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
6c5uvnA_
99.5 21
PDB header:transport protein
Chain: A: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
7c5uvnC_
99.5 21
PDB header:transport protein
Chain: C: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
8c5uvnB_
99.5 21
PDB header:transport protein
Chain: B: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
9c1qu7A_
93.5 10
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i;
PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor
10c3g67A_
93.3 12
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima
11c2ch7A_
85.5 9
PDB header:chemotaxis
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima
12c3zx6A_
85.2 8
PDB header:signaling
Chain: A: PDB Molecule:hamp, methyl-accepting chemotaxis protein i;
PDBTitle: structure of hamp(af1503)-tsr fusion - hamp (a291v) mutant
13c4tkoB_
81.9 12
PDB header:membrane protein
Chain: B: PDB Molecule:emra;
PDBTitle: structure of the periplasmic adaptor protein emra
14c3ojaB_
81.1 7
PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex
15c1deqO_
79.0 13
PDB header:blood clotting
Chain: O: PDB Molecule:fibrinogen (beta chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
16c2qf4A_
77.9 14
PDB header:structural protein
Chain: A: PDB Molecule:cell shape determining protein mrec;
PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form)
17d1st6a4
75.8 14
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
18c1ei3E_
75.0 12
PDB header:blood clotting
Chain: E: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
19c6ezvX_
73.4 16
PDB header:toxin
Chain: X: PDB Molecule:non-hemolytic enterotoxin lytic component l1;
PDBTitle: the cytotoxin maka from vibrio cholerae
20c2d4yA_
73.1 9
PDB header:structural protein
Chain: A: PDB Molecule:flagellar hook-associated protein 1;
PDBTitle: crystal structure of a 49k fragment of hap1 (flgk)
21c3lnrA_
not modelled 72.3 12
PDB header:signaling protein
Chain: A: PDB Molecule:aerotaxis transducer aer2;
PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2
22c3cwgA_
not modelled 67.2 10
PDB header:transcription
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: unphosphorylated mouse stat3 core fragment
23c6gajA_
not modelled 66.1 16
PDB header:viral protein
Chain: A: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus sigma1 coiled coil tail (iodide)
24c4rh7A_
not modelled 65.8 11
PDB header:motor protein
Chain: A: PDB Molecule:green fluorescent protein/cytoplasmic dynein 2 heavy chain
PDBTitle: crystal structure of human cytoplasmic dynein 2 motor domain in2 complex with adp.vi
25c1deqF_
not modelled 64.8 7
PDB header:blood clotting
Chain: F: PDB Molecule:fibrinogen (gamma chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
26c6b7nC_
not modelled 64.1 9
PDB header:viral protein
Chain: C: PDB Molecule:spike protein;
PDBTitle: cryo-electron microscopy structure of porcine delta coronavirus spike2 protein in the pre-fusion state
27c3vkhA_
not modelled 63.6 10
PDB header:motor protein
Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic;
PDBTitle: x-ray structure of a functional full-length dynein motor domain
28c2j5uB_
not modelled 61.6 11
PDB header:cell shape regulation
Chain: B: PDB Molecule:mrec protein;
PDBTitle: mrec lysteria monocytogenes
29c1kmiZ_
not modelled 58.8 8
PDB header:signaling protein
Chain: Z: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of an e.coli chemotaxis protein, chez
30c3j99M_
not modelled 58.6 12
PDB header:hydrolase
Chain: M: PDB Molecule:synaptosomal-associated protein 25;
PDBTitle: structure of 20s supercomplex determined by single particle2 cryoelectron microscopy (state iiib)
31c5xbjA_
not modelled 56.6 7
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar hook-associated protein flgk;
PDBTitle: the structure of the flagellar hook junction protein hap1 (flgk) from2 campylobacter jejuni
32c4ut1A_
not modelled 55.7 12
PDB header:motor protein
Chain: A: PDB Molecule:flagellar hook-associated protein;
PDBTitle: the structure of the flagellar hook junction protein flgk2 from burkholderia pseudomallei
33c4iogD_
not modelled 55.7 12
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
34d1eq1a_
not modelled 55.4 6
Fold:Apolipophorin-III
Superfamily:Apolipophorin-III
Family:Apolipophorin-III
35c2vs0B_
not modelled 53.1 8
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
36c6o7ua_
not modelled 51.5 9
PDB header:membrane protein
Chain: A: PDB Molecule:
PDBTitle: saccharomyces cerevisiae v-atpase stv1-vo
37c2qihA_
not modelled 51.3 10
PDB header:cell adhesion
Chain: A: PDB Molecule:protein uspa1;
PDBTitle: crystal structure of 527-665 fragment of uspa1 protein from moraxella2 catarrhalis
38c5zuvB_
not modelled 50.3 11
PDB header:viral protein, inhibitor
Chain: B: PDB Molecule:spike glycoprotein,spike glycoprotein,inhibitor ek1;
PDBTitle: crystal structure of the human coronavirus 229e hr1 motif in complex2 with pan-covs inhibitor ek1
39c5j65A_
not modelled 49.2 13
PDB header:toxin
Chain: A: PDB Molecule:pesticidal crystal protein cry6aa;
PDBTitle: crystal structure of trypsin activated cry6aa
40c2ieqC_
not modelled 49.1 10
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein
41c6f0kA_
not modelled 48.1 13
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
42c1ei3C_
not modelled 45.5 10
PDB header:blood clotting
Chain: C: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
43c2wpqA_
not modelled 44.5 11
PDB header:membrane protein
Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment;
PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (sadak3, in-2 register fusion)
44c2gl2B_
not modelled 37.5 9
PDB header:cell adhesion
Chain: B: PDB Molecule:adhesion a;
PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,y69g) of2 bacterial adhesin fada
45c5u0pU_
not modelled 36.1 9
PDB header:transcription
Chain: U: PDB Molecule:mediator complex subunit 21;
PDBTitle: cryo-em structure of the transcriptional mediator
46c2dq3A_
not modelled 35.2 14
PDB header:ligase
Chain: A: PDB Molecule:seryl-trna synthetase;
PDBTitle: crystal structure of aq_298
47c6gapB_
not modelled 34.9 14
PDB header:viral protein
Chain: B: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t3d reovirus sigma1 coiled coil tail and body
48c1bf5A_
not modelled 34.2 8
PDB header:gene regulation/dna
Chain: A: PDB Molecule:signal transducer and activator of transcription 1-
PDBTitle: tyrosine phosphorylated stat-1/dna complex
49c4abxB_
not modelled 31.6 18
PDB header:dna binding protein
Chain: B: PDB Molecule:dna repair protein recn;
PDBTitle: crystal structure of deinococcus radiodurans recn coiled-2 coil domain
50d1ykhb1
not modelled 30.5 10
Fold:Mediator hinge subcomplex-like
Superfamily:Mediator hinge subcomplex-like
Family:CSE2-like
51c5szsC_
not modelled 30.4 12
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: glycan shield and epitope masking of a coronavirus spike protein2 observed by cryo-electron microscopy
52d1v5va1
not modelled 30.3 18
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
53c4wy4B_
not modelled 27.9 11
PDB header:membrane protein
Chain: B: PDB Molecule:syntaxin-17;
PDBTitle: crystal structure of autophagic snare complex
54c6ewyA_
not modelled 27.6 12
PDB header:structural protein
Chain: A: PDB Molecule:peptidoglycan endopeptidase ripa;
PDBTitle: ripa peptidoglycan hydrolase (rv1477, mycobacterium tuberculosis) n-2 terminal domain
55c5b0oB_
not modelled 27.2 29
PDB header:hydrolase/motor protein
Chain: B: PDB Molecule:flagellum-specific atp synthase;
PDBTitle: structure of the flih-flii complex
56c5i08A_
not modelled 25.2 13
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, envelope glycoprotein chimera;
PDBTitle: prefusion structure of a human coronavirus spike protein
57d1h9ra2
not modelled 24.5 20
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
58c3jclC_
not modelled 24.4 15
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: cryo-electron microscopy structure of a coronavirus spike glycoprotein2 trimer
59c5e5wB_
not modelled 24.0 12
PDB header:hydrolase
Chain: B: PDB Molecule:hemagglutinin-esterase;
PDBTitle: hemagglutinin-esterase-fusion mutant structure of influenza d virus
60c6e6aB_
not modelled 23.7 13
PDB header:protein binding
Chain: B: PDB Molecule:inclusion membrane protein a;
PDBTitle: triclinic crystal form of inca g144a point mutant
61c6gaoC_
not modelled 23.4 7
PDB header:viral protein
Chain: C: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus sigma1 coiled coil tail and body
62c4njlA_
not modelled 23.1 9
PDB header:viral protein
Chain: A: PDB Molecule:s protein;
PDBTitle: crystal structure of middle east respiratory syndrome coronavirus s22 protein fusion core
63c5cwsJ_
not modelled 22.6 10
PDB header:protein transport
Chain: J: PDB Molecule:nucleoporin nup49;
PDBTitle: crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site
64c1cz5A_
not modelled 22.4 12
PDB header:hydrolase
Chain: A: PDB Molecule:vcp-like atpase;
PDBTitle: nmr structure of vat-n: the n-terminal domain of vat (vcp-2 like atpase of thermoplasma)
65c6gy8B_
not modelled 21.7 8
PDB header:toxin
Chain: B: PDB Molecule:xaxa;
PDBTitle: crystal structure of xaxa from xenorhabdus nematophila
66c3ghgK_
not modelled 21.5 9
PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen
67d1h9ma2
not modelled 20.9 26
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
68c5x5fC_
not modelled 20.8 12
PDB header:viral protein
Chain: C: PDB Molecule:s protein;
PDBTitle: prefusion structure of mers-cov spike glycoprotein, conformation 2
69c5wwlN_
not modelled 20.8 12
PDB header:cell cycle
Chain: N: PDB Molecule:kinetochore protein nnf1;
PDBTitle: crystal structure of the schizogenesis pombe kinetochore mis12c2 subcomplex
70c2q13A_
not modelled 20.6 8
PDB header:protein transport
Chain: A: PDB Molecule:dcc-interacting protein 13 alpha;
PDBTitle: crystal structure of bar-ph domain of appl1
71c3ipdB_
not modelled 19.8 8
PDB header:exocytosis
Chain: B: PDB Molecule:syntaxin-1a;
PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21
72c4qkvB_
not modelled 19.7 15
PDB header:transcription
Chain: B: PDB Molecule:polymerase i and transcript release factor;
PDBTitle: crystal structure of the mouse cavin1 hr1 domain
73c5wrgB_
not modelled 19.0 13
PDB header:virus like particle
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: sars-cov spike glycoprotein
74c3iv1F_
not modelled 18.9 10
PDB header:hydrolase
Chain: F: PDB Molecule:tumor susceptibility gene 101 protein;
PDBTitle: coiled-coil domain of tumor susceptibility gene 101
75c4modB_
not modelled 18.7 12
PDB header:viral protein
Chain: B: PDB Molecule:hr1 of s protein, linker, hr2 of s protein;
PDBTitle: structure of the mers-cov fusion core
76c6nzkB_
not modelled 18.5 15
PDB header:viral protein
Chain: B: PDB Molecule:spike surface glycoprotein;
PDBTitle: structural basis for human coronavirus attachment to sialic acid2 receptors
77c5zhyA_
not modelled 18.3 7
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, spike glycoprotein;
PDBTitle: structural characterization of the hcov-229e fusion core
78c6grjG_
not modelled 18.2 15
PDB header:toxin
Chain: G: PDB Molecule:ahlb;
PDBTitle: structure of the ahlb pore of the tripartite alpha-pore forming toxin,2 ahl, from aeromonas hydrophila.
79c4lwsA_
not modelled 17.9 6
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
80c4qkwB_
not modelled 17.8 15
PDB header:signaling protein
Chain: B: PDB Molecule:muscle-related coiled-coil protein;
PDBTitle: crystal structure of the zebrafish cavin4a hr1 domain
81c3gvmA_
not modelled 17.2 15
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
82c3j6vL_
not modelled 17.2 14
PDB header:ribosome
Chain: L: PDB Molecule:28s ribosomal protein s12, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
83c5x5bB_
not modelled 16.9 12
PDB header:viral protein
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: prefusion structure of sars-cov spike glycoprotein, conformation 2
84c3zbhC_
not modelled 16.3 9
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
85c5dmaA_
not modelled 16.2 27
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent dna helicase pcra;
PDBTitle: crystal structure of c-terminal tudor domain in pcra/uvrd helicase
86c3j9vC_
not modelled 16.1 17
PDB header:hydrolase
Chain: C: PDB Molecule:v-type proton atpase catalytic subunit a;
PDBTitle: yeast v-atpase state 3
87c3jszA_
not modelled 15.8 19
PDB header:transferase
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: legionella pneumophila glucosyltransferase lgt1 n293a with udp-glc
88d1guta_
not modelled 15.7 20
Fold:OB-fold
Superfamily:MOP-like
Family:Molybdate/tungstate binding protein MOP
89d1h9ma1
not modelled 15.6 18
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
90c4e40A_
not modelled 15.6 11
PDB header:transport protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: the haptoglobin-hemoglobin receptor of trypanosoma congolense
91c3dyjA_
not modelled 15.1 7
PDB header:structural protein
Chain: A: PDB Molecule:talin-1;
PDBTitle: crystal structure a talin rod fragment
92c5xlrC_
not modelled 15.1 12
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: structure of sars-cov spike glycoprotein
93d1xmec1
not modelled 14.6 32
Fold:Single transmembrane helix
Superfamily:Bacterial ba3 type cytochrome c oxidase subunit IIa
Family:Bacterial ba3 type cytochrome c oxidase subunit IIa
94c3bvdC_
not modelled 14.6 32
PDB header:oxidoreductase
Chain: C: PDB Molecule:cytochrome c oxidase polypeptide 2a;
PDBTitle: structure of surface-engineered cytochrome ba3 oxidase from thermus2 thermophilus under xenon pressure, 100psi 5min
95c3vr5C_
not modelled 14.5 19
PDB header:hydrolase
Chain: C: PDB Molecule:v-type sodium atpase catalytic subunit a;
PDBTitle: crystal structure of nucleotide-free enterococcus hirae v1-atpase2 [ev1(l)]
96c5n76C_
not modelled 14.3 15
PDB header:nickel-binding protein
Chain: C: PDB Molecule:coot;
PDBTitle: crystal structure of the apo-form of the co dehydrogenase accessory2 protein coot from rhodospirillum rubrum
97c1v5vA_
not modelled 14.2 17
PDB header:transferase
Chain: A: PDB Molecule:aminomethyltransferase;
PDBTitle: crystal structure of a component of glycine cleavage system: t-protein2 from pyrococcus horikoshii ot3 at 1.5 a resolution
98c3ghgI_
not modelled 14.1 8
PDB header:blood clotting
Chain: I: PDB Molecule:fibrinogen gamma chain;
PDBTitle: crystal structure of human fibrinogen
99d2uubl1
not modelled 13.7 25
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below