Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3499c_(mce4A)_3918177_3919379
DateFri Aug 9 18:20:17 BST 2019
Unique Job ID551d5c34483ec732
SequenceMSGGGSRRTS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.582 Y:39.000 Z:68.181
Model (left) based on template c6ic4C_
Top template information
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
Confidence and coverage
Confidence: 99.8% Coverage: 33%
132 residues ( 33% of your sequence) have been modelled with 99.8% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
278 residues ( 70%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ic4C_



99.8 17
PDB header:protein transport
Chain: C: PDB Molecule:toluene tolerance efflux transporter (abc superfamily,
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
2c5uw8C_



99.5 17
PDB header:transport protein
Chain: C: PDB Molecule:probable phospholipid abc transporter-binding protein mlad;
PDBTitle: structure of e. coli mce protein mlad, core mce domain
3c5uvnB_



99.2 19
PDB header:transport protein
Chain: B: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
4c5uvnF_



99.2 19
PDB header:transport protein
Chain: F: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
5c5uvnC_



99.2 19
PDB header:transport protein
Chain: C: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
6c5uvnA_



99.2 19
PDB header:transport protein
Chain: A: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
7c5uvnE_



99.2 19
PDB header:transport protein
Chain: E: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
8c5uvnD_



99.2 19
PDB header:transport protein
Chain: D: PDB Molecule:paraquat-inducible protein b;
PDBTitle: structure of e. coli mce protein pqib, periplasmic domain
9c1qu7A_



90.5 7
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i;
PDBTitle: four helical-bundle structure of the cytoplasmic domain of a serine2 chemotaxis receptor
10c3g67A_



88.3 11
PDB header:signaling protein
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of a soluble chemoreceptor from thermotoga2 maritima
11c6b7nC_



81.5 11
PDB header:viral protein
Chain: C: PDB Molecule:spike protein;
PDBTitle: cryo-electron microscopy structure of porcine delta coronavirus spike2 protein in the pre-fusion state
12c3lnrA_



81.1 14
PDB header:signaling protein
Chain: A: PDB Molecule:aerotaxis transducer aer2;
PDBTitle: crystal structure of poly-hamp domains from the p. aeruginosa soluble2 receptor aer2
13c2j5uB_



68.8 14
PDB header:cell shape regulation
Chain: B: PDB Molecule:mrec protein;
PDBTitle: mrec lysteria monocytogenes
14c2ch7A_



66.2 9
PDB header:chemotaxis
Chain: A: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: crystal structure of the cytoplasmic domain of a bacterial2 chemoreceptor from thermotoga maritima
15c5lp5F_



63.0 23
PDB header:hydrolase/antibiotic
Chain: F: PDB Molecule:rod shape-determining protein (mrec);
PDBTitle: complex between penicillin-binding protein (pbp2) and mrec from2 helicobacter pylori
16c3cwgA_



58.8 14
PDB header:transcription
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: unphosphorylated mouse stat3 core fragment
17c2qf4A_



57.8 16
PDB header:structural protein
Chain: A: PDB Molecule:cell shape determining protein mrec;
PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form)
18c5xbjA_



57.2 14
PDB header:biosynthetic protein
Chain: A: PDB Molecule:flagellar hook-associated protein flgk;
PDBTitle: the structure of the flagellar hook junction protein hap1 (flgk) from2 campylobacter jejuni
19d1st6a4



53.4 12
Fold:Four-helical up-and-down bundle
Superfamily:alpha-catenin/vinculin-like
Family:alpha-catenin/vinculin
20c6nb3B_



50.5 12
PDB header:virus
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: mers-cov complex with human neutralizing lca60 antibody fab fragment2 (state 1)
21c4abxB_



not modelled 46.3 12
PDB header:dna binding protein
Chain: B: PDB Molecule:dna repair protein recn;
PDBTitle: crystal structure of deinococcus radiodurans recn coiled-2 coil domain
22c5u0pU_



not modelled 46.0 11
PDB header:transcription
Chain: U: PDB Molecule:mediator complex subunit 21;
PDBTitle: cryo-em structure of the transcriptional mediator
23c1kmiZ_



not modelled 45.1 15
PDB header:signaling protein
Chain: Z: PDB Molecule:chemotaxis protein chez;
PDBTitle: crystal structure of an e.coli chemotaxis protein, chez
24c5zhyA_



not modelled 44.6 7
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, spike glycoprotein;
PDBTitle: structural characterization of the hcov-229e fusion core
25c5szsC_



not modelled 44.0 11
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: glycan shield and epitope masking of a coronavirus spike protein2 observed by cryo-electron microscopy
26c6nzkB_



not modelled 41.7 14
PDB header:viral protein
Chain: B: PDB Molecule:spike surface glycoprotein;
PDBTitle: structural basis for human coronavirus attachment to sialic acid2 receptors
27c1ei3E_



not modelled 41.1 6
PDB header:blood clotting
Chain: E: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
28c2d4yA_



not modelled 40.5 13
PDB header:structural protein
Chain: A: PDB Molecule:flagellar hook-associated protein 1;
PDBTitle: crystal structure of a 49k fragment of hap1 (flgk)
29c4tkoB_



not modelled 39.4 18
PDB header:membrane protein
Chain: B: PDB Molecule:emra;
PDBTitle: structure of the periplasmic adaptor protein emra
30c5x5bB_



not modelled 39.3 10
PDB header:viral protein
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: prefusion structure of sars-cov spike glycoprotein, conformation 2
31c6cv0C_



not modelled 37.5 9
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: cryo-electron microscopy structure of infectious bronchitis2 coronavirus spike protein
32c5dmaA_



not modelled 37.3 20
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent dna helicase pcra;
PDBTitle: crystal structure of c-terminal tudor domain in pcra/uvrd helicase
33c3zx6A_



not modelled 36.9 6
PDB header:signaling
Chain: A: PDB Molecule:hamp, methyl-accepting chemotaxis protein i;
PDBTitle: structure of hamp(af1503)-tsr fusion - hamp (a291v) mutant
34c5zuvB_



not modelled 36.7 16
PDB header:viral protein, inhibitor
Chain: B: PDB Molecule:spike glycoprotein,spike glycoprotein,inhibitor ek1;
PDBTitle: crystal structure of the human coronavirus 229e hr1 motif in complex2 with pan-covs inhibitor ek1
35c5i08A_



not modelled 35.7 12
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, envelope glycoprotein chimera;
PDBTitle: prefusion structure of a human coronavirus spike protein
36c3jclC_



not modelled 34.9 10
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: cryo-electron microscopy structure of a coronavirus spike glycoprotein2 trimer
37d1h9ma2



not modelled 34.2 29
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
38c5n77A_



not modelled 33.4 15
PDB header:transport protein
Chain: A: PDB Molecule:magnesium transport protein cora;
PDBTitle: crystal structure of the cytosolic domain of the cora magnesium2 channel from escherichia coli in complex with magnesium
39c3j6vL_



not modelled 33.2 18
PDB header:ribosome
Chain: L: PDB Molecule:28s ribosomal protein s12, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
40c2jo1A_



not modelled 32.4 26
PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
41c5n76C_



not modelled 32.1 21
PDB header:nickel-binding protein
Chain: C: PDB Molecule:coot;
PDBTitle: crystal structure of the apo-form of the co dehydrogenase accessory2 protein coot from rhodospirillum rubrum
42c2jp3A_



not modelled 31.9 22
PDB header:transcription
Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4;
PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles
43d1h9ra2



not modelled 31.4 20
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
44c6e6aB_



not modelled 31.4 16
PDB header:protein binding
Chain: B: PDB Molecule:inclusion membrane protein a;
PDBTitle: triclinic crystal form of inca g144a point mutant
45c1zn1L_



not modelled 31.1 26
PDB header:biosynthetic/structural protein/rna
Chain: L: PDB Molecule:30s ribosomal protein s12;
PDBTitle: coordinates of rrf fitted into cryo-em map of the 70s post-termination2 complex
46c3ok8A_



not modelled 30.8 13
PDB header:protein binding
Chain: A: PDB Molecule:brain-specific angiogenesis inhibitor 1-associated protein
PDBTitle: i-bar of pinkbar
47d2uubl1



not modelled 30.7 35
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
48c3gvmA_



not modelled 30.0 9
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
49c3ghgK_



not modelled 29.6 9
PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen
50c5x5fC_



not modelled 29.4 13
PDB header:viral protein
Chain: C: PDB Molecule:s protein;
PDBTitle: prefusion structure of mers-cov spike glycoprotein, conformation 2
51d1h9ma1



not modelled 28.9 12
Fold:OB-fold
Superfamily:MOP-like
Family:BiMOP, duplicated molybdate-binding domain
52c2mkvA_



not modelled 27.7 35
PDB header:transport protein
Chain: A: PDB Molecule:sodium/potassium-transporting atpase subunit gamma;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd2b in micelles
53c2ieqC_



not modelled 26.9 20
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: core structure of s2 from the human coronavirus nl63 spike2 glycoprotein
54c4lwsA_



not modelled 26.7 9
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
55c1ei3C_



not modelled 25.9 11
PDB header:blood clotting
Chain: C: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
56c4wsrA_



not modelled 25.3 8
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: the crystal structure of hemagglutinin form a/chicken/new york/14677-2 13/1998
57d2qall1



not modelled 25.3 26
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
58c4h8sA_



not modelled 25.2 13
PDB header:signaling protein
Chain: A: PDB Molecule:dcc-interacting protein 13-beta;
PDBTitle: crystal structure of human appl2barph domain
59c2wpqA_



not modelled 24.8 8
PDB header:membrane protein
Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment;
PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (sadak3, in-2 register fusion)
60c3ur1C_



not modelled 24.4 24
PDB header:immune system
Chain: C: PDB Molecule:methyl-accepting chemotaxis protein;
PDBTitle: the structure of a ternary complex between chea domains p4 and p5 with2 chew and with a truncated fragment of tm14, a chemoreceptor analog3 from thermotoga maritima.
61c6cs2A_



not modelled 23.5 10
PDB header:viral protein/hydrolase
Chain: A: PDB Molecule:spike glycoprotein,fibritin;
PDBTitle: sars spike glycoprotein - human ace2 complex, stabilized variant, all2 ace2-bound particles
62d2cu6a1



not modelled 23.4 14
Fold:Alpha-lytic protease prodomain-like
Superfamily:Fe-S cluster assembly (FSCA) domain-like
Family:PaaD-like
63d1guta_



not modelled 23.0 24
Fold:OB-fold
Superfamily:MOP-like
Family:Molybdate/tungstate binding protein MOP
64c4n21E_



not modelled 22.8 11
PDB header:viral protein
Chain: E: PDB Molecule:gp2 ectodomain;
PDBTitle: crystal structure of the gp2 core domain from the california academy2 of science virus
65d1g4us1



not modelled 22.6 17
Fold:Four-helical up-and-down bundle
Superfamily:Bacterial GAP domain
Family:Bacterial GAP domain
66c4c47B_



not modelled 22.2 17
PDB header:cell adhesion
Chain: B: PDB Molecule:inner membrane lipoprotein;
PDBTitle: salmonella enterica trimeric lipoprotein sadb
67d1i94l_



not modelled 21.8 35
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
68c2kg7B_



not modelled 21.8 16
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
69c2l8sA_



not modelled 21.3 18
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
70d1hcia4



not modelled 21.1 3
Fold:Spectrin repeat-like
Superfamily:Spectrin repeat
Family:Spectrin repeat
71c3bt6B_



not modelled 20.8 13
PDB header:viral protein
Chain: B: PDB Molecule:influenza b hemagglutinin (ha);
PDBTitle: crystal structure of influenza b virus hemagglutinin
72c4fiuC_



not modelled 20.3 12
PDB header:viral protein
Chain: C: PDB Molecule:hemagglutinin;
PDBTitle: the structure of hemagglutinin of h16 subtype influenza virus with2 v327g mutation
73c3qr8A_



not modelled 20.3 15
PDB header:viral protein
Chain: A: PDB Molecule:baseplate assembly protein v;
PDBTitle: crystal structure of the bacteriophage p2 membrane-piercing protein2 gpv
74c3zbhC_



not modelled 19.9 11
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
75c6g90Q_



not modelled 19.1 13
PDB header:splicing
Chain: Q: PDB Molecule:cold sensitive u2 snrna suppressor 1;
PDBTitle: prespliceosome structure provides insight into spliceosome assembly2 and regulation (map a2)
76d1fr3a_



not modelled 19.0 12
Fold:OB-fold
Superfamily:MOP-like
Family:Molybdate/tungstate binding protein MOP
77c1ha0A_



not modelled 18.6 11
PDB header:viral protein
Chain: A: PDB Molecule:protein (hemagglutinin precursor);
PDBTitle: hemagglutinin precursor ha0
78c2wrhI_



not modelled 18.5 10
PDB header:viral protein
Chain: I: PDB Molecule:hemagglutinin ha2 chain;
PDBTitle: structure of h1 duck albert hemagglutinin with human2 receptor
79c2wr2B_



not modelled 18.4 9
PDB header:viral protein
Chain: B: PDB Molecule:hemagglutinin;
PDBTitle: structure of influenza h2 avian hemagglutinin with avian2 receptor
80c2kbbA_



not modelled 18.2 16
PDB header:structural protein
Chain: A: PDB Molecule:talin-1;
PDBTitle: nmr structure of the talin rod domain, 1655-1822
81c6gajA_



not modelled 18.1 10
PDB header:viral protein
Chain: A: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t1l reovirus sigma1 coiled coil tail (iodide)
82c2jwyA_



not modelled 18.0 18
PDB header:lipoprotein
Chain: A: PDB Molecule:uncharacterized lipoprotein yaji;
PDBTitle: solution nmr structure of uncharacterized lipoprotein yaji from2 escherichia coli. northeast structural genomics target er540
83c4rh7A_



not modelled 17.8 12
PDB header:motor protein
Chain: A: PDB Molecule:green fluorescent protein/cytoplasmic dynein 2 heavy chain
PDBTitle: crystal structure of human cytoplasmic dynein 2 motor domain in2 complex with adp.vi
84d1wosa1



not modelled 17.7 24
Fold:Elongation factor/aminomethyltransferase common domain
Superfamily:Aminomethyltransferase beta-barrel domain
Family:Aminomethyltransferase beta-barrel domain
85c1mqlB_



not modelled 17.5 10
PDB header:viral protein
Chain: B: PDB Molecule:hemagglutinin ha2 chain;
PDBTitle: bha of ukr/63
86c6gapB_



not modelled 17.2 9
PDB header:viral protein
Chain: B: PDB Molecule:outer capsid protein sigma-1;
PDBTitle: crystal structure of the t3d reovirus sigma1 coiled coil tail and body
87c1jccC_



not modelled 17.2 27
PDB header:membrane protein
Chain: C: PDB Molecule:major outer membrane lipoprotein;
PDBTitle: crystal structure of a novel alanine-zipper trimer at 1.7 a2 resolution, v13a,l16a,v20a,l23a,v27a,m30a,v34a mutations
88d1wa8b1



not modelled 16.8 15
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
89c2p22A_



not modelled 16.8 8
PDB header:transport protein
Chain: A: PDB Molecule:suppressor protein stp22 of temperature-sensitive alpha-
PDBTitle: structure of the yeast escrt-i heterotetramer core
90c1deqO_



not modelled 16.7 10
PDB header:blood clotting
Chain: O: PDB Molecule:fibrinogen (beta chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
91c1hgeD_



not modelled 16.7 11
PDB header:viral protein
Chain: D: PDB Molecule:hemagglutinin, (g135r), ha1 chain;
PDBTitle: binding of influenza virus hemagglutinin to analogs of its cell-2 surface receptor, sialic acid: analysis by proton nuclear magnetic3 resonance spectroscopy and x-ray crystallography
92c1p84E_



not modelled 16.7 14
PDB header:oxidoreductase
Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit;
PDBTitle: hdbt inhibited yeast cytochrome bc1 complex
93c4h32L_



not modelled 16.7 11
PDB header:viral protein
Chain: L: PDB Molecule:hemagglutinin;
PDBTitle: the crystal structure of the hemagglutinin h17 derived the bat2 influenza a virus
94c2zxeG_



not modelled 16.5 16
PDB header:hydrolase/transport protein
Chain: G: PDB Molecule:phospholemman-like protein;
PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state
95c5c70B_



not modelled 16.2 14
PDB header:hydrolase
Chain: B: PDB Molecule:glucuronidase;
PDBTitle: the structure of aspergillus oryzae beta-glucuronidase
96c6iiuA_



not modelled 16.1 5
PDB header:signaling protein
Chain: A: PDB Molecule:soluble cytochrome b562,thromboxane a2 receptor,rubredoxin,
PDBTitle: crystal structure of the human thromboxane a2 receptor bound to2 ramatroban
97c5wrgB_



not modelled 16.1 19
PDB header:virus like particle
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: sars-cov spike glycoprotein
98c1ru7B_



not modelled 15.9 10
PDB header:viral protein
Chain: B: PDB Molecule:hemagglutinin;
PDBTitle: 1934 human h1 hemagglutinin
99c1hzeB_



not modelled 15.9 14
PDB header:transferase
Chain: B: PDB Molecule:riboflavin synthase alpha chain;
PDBTitle: solution structure of the n-terminal domain of riboflavin synthase2 from e. coli

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below