Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3500c_(yrbE4B)_3919399_3920241
DateFri Aug 9 18:20:17 BST 2019
Unique Job ID75b7a54d299edf34
SequenceMSYDVTIRFR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.997 Y:48.483 Z:72.528
Model (left) based on template c6ic4H_
Top template information
PDB header:protein transport
Chain: H: PDB Molecule:abc transporter permease;
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
Confidence and coverage
Confidence:100.0% Coverage: 90%
253 residues ( 90% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ic4H_



100.0 21
PDB header:protein transport
Chain: H: PDB Molecule:abc transporter permease;
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
2c5x5yG_



83.0 17
PDB header:membrane protein
Chain: G: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
3c5l75F_



63.9 15
PDB header:transport protein
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: a protein structure
4c5l75G_



52.9 10
PDB header:transport protein
Chain: G: PDB Molecule:fig000906: predicted permease;
PDBTitle: a protein structure
5c6mjpG_



47.4 16
PDB header:lipid transport
Chain: G: PDB Molecule:lps export abc transporter permease lptg;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
6c6qvcB_



30.6 11
PDB header:membrane protein
Chain: B: PDB Molecule:chloride channel protein 1;
PDBTitle: cryoem structure of the human clc-1 chloride channel, cbs state 1
7c5x5yF_



23.4 13
PDB header:membrane protein
Chain: F: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
8c6mjpF_



16.3 12
PDB header:lipid transport
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
9c4migC_



14.6 24
PDB header:oxidoreductase
Chain: C: PDB Molecule:pyranose 2-oxidase;
PDBTitle: pyranose 2-oxidase from phanerochaete chrysosporium, recombinant wild2 type
10d2hafa1



14.6 10
Fold:VC0467-like
Superfamily:VC0467-like
Family:VC0467-like
11c6coyB_



13.9 13
PDB header:transport protein
Chain: B: PDB Molecule:chloride channel protein 1;
PDBTitle: human clc-1 chloride ion channel, transmembrane domain
12c5ghaF_



13.6 10
PDB header:transferase/transport protein
Chain: F: PDB Molecule:sulfur carrier ttub;
PDBTitle: sulfur transferase ttua in complex with sulfur carrier ttub
13c2hg5D_



13.2 27
PDB header:membrane protein
Chain: D: PDB Molecule:kcsa channel;
PDBTitle: cs+ complex of a k channel with an amide to ester substitution in the2 selectivity filter
14c2hv8D_



12.4 16
PDB header:protein transport
Chain: D: PDB Molecule:rab11 family-interacting protein 3;
PDBTitle: crystal structure of gtp-bound rab11 in complex with fip3
15c2mfrA_



12.0 12
PDB header:transferase
Chain: A: PDB Molecule:insulin receptor;
PDBTitle: solution structure of the transmembrane domain of the insulin receptor2 in micelles
16c2kn8A_



11.9 21
PDB header:protein binding, dna binding protein
Chain: A: PDB Molecule:dna cleavage and packaging protein large subunit, ul89;
PDBTitle: nmr structure of the c-terminal domain of pul89
17c1q7tA_



10.3 36
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical protein rv1170;
PDBTitle: rv1170 (mshb) from mycobacterium tuberculosis
18c2aj2A_



10.2 10
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical upf0301 protein vc0467;
PDBTitle: x-ray crystal structure of protein vc0467 from vibrio2 cholerae. northeast structural genomics consortium target3 vcr8.
19c1cf3A_



9.5 17
PDB header:oxidoreductase(flavoprotein)
Chain: A: PDB Molecule:protein (glucose oxidase);
PDBTitle: glucose oxidase from apergillus niger
20c5sv0C_



9.4 15
PDB header:transport protein
Chain: C: PDB Molecule:biopolymer transport protein exbb;
PDBTitle: structure of the exbb/exbd complex from e. coli at ph 7.0
21c2m67A_



not modelled 9.2 0
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: full-length mercury transporter protein merf in lipid bilayer2 membranes
22c1abzA_



not modelled 9.0 33
PDB header:de novo design
Chain: A: PDB Molecule:alpha-t-alpha;
PDBTitle: alpha-t-alpha, a de novo designed peptide, nmr, 232 structures
23d1q74a_



not modelled 7.8 36
Fold:LmbE-like
Superfamily:LmbE-like
Family:LmbE-like
24c5l1xH_



not modelled 7.4 47
PDB header:viral protein
Chain: H: PDB Molecule:hmpv f1 subunit;
PDBTitle: structure of the human metapneumovirus fusion protein in the2 postfusion conformation
25d1z96a1



not modelled 7.0 12
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
26c4dagA_



not modelled 6.8 47
PDB header:viral protein/immune system
Chain: A: PDB Molecule:fusion glycoprotein f0;
PDBTitle: structure of the human metapneumovirus fusion protein with2 neutralizing antibody identifies a pneumovirus antigenic site
27c5xu1M_



not modelled 6.7 8
PDB header:transport protein
Chain: M: PDB Molecule:abc transporter permeae;
PDBTitle: structure of a non-canonical abc transporter from streptococcus2 pneumoniae r6
28c5wb0F_



not modelled 6.5 47
PDB header:viral protein
Chain: F: PDB Molecule:fusion glycoprotein f0;
PDBTitle: crystal structure of human metapneumovirus fusion glycoprotein2 stabilized in the prefusion state
29c1vmaA_



not modelled 6.5 25
PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
30d2hjqa1



not modelled 6.5 12
Fold:LEM/SAP HeH motif
Superfamily:Rho N-terminal domain-like
Family:YqbF C-terminal domain-like
31c6bs7A_



not modelled 5.9 24
PDB header:ligase
Chain: A: PDB Molecule:adenylosuccinate synthetase;
PDBTitle: crystal structure of adenylosuccinate synthetase from legionella2 pneumophila philadelphia 1
32c5bmoB_



not modelled 5.8 38
PDB header:hydrolase
Chain: B: PDB Molecule:putative uncharacterized protein lnmx;
PDBTitle: lnmx protein, a putative glcnac-pi de-n-acetylase from streptomyces2 atroolivaceus
33c5l3sF_



not modelled 5.6 42
PDB header:protein transport
Chain: F: PDB Molecule:signal recognition particle receptor ftsy;
PDBTitle: structure of the gtpase heterodimer of crenarchaeal srp54 and ftsy
34c1gw4A_



not modelled 5.6 27
PDB header:high density lipoproteins
Chain: A: PDB Molecule:apoa-i;
PDBTitle: the helix-hinge-helix structural motif in human2 apolipoprotein a-i determined by nmr spectroscopy, 13 structure
35c3vvpA_



not modelled 5.6 12
PDB header:transport protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of mate in complex with br-nrf
36c2m7xA_



not modelled 5.5 14
PDB header:membrane protein
Chain: A: PDB Molecule:na(+)/h(+) antiporter;
PDBTitle: structural and functional analysis of transmembrane segment iv of the2 salt tolerance protein sod2
37c4ak9A_



not modelled 5.5 25
PDB header:protein transport
Chain: A: PDB Molecule:cpftsy;
PDBTitle: structure of chloroplast ftsy from physcomitrella patens
38d1g7oa1



not modelled 5.5 15
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
39c2j7pA_



not modelled 5.1 33
PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
40d2k0bx1



not modelled 5.0 20
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
41c2jy8A_



not modelled 5.0 20
PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin-binding protein p62;
PDBTitle: nmr structure of the ubiquitin associated (uba) domain of2 p62 (sqstm1) in complex with ubiquitin. rdc refined
42c1zaxU_



not modelled 5.0 36
PDB header:structural protein
Chain: U: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b
43c1zaxW_



not modelled 5.0 36
PDB header:structural protein
Chain: W: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b
44c1zaxV_



not modelled 5.0 36
PDB header:structural protein
Chain: V: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b
45c1zavW_



not modelled 5.0 36
PDB header:structural protein
Chain: W: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21
46c1zavV_



not modelled 5.0 36
PDB header:structural protein
Chain: V: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21
47c1zavU_



not modelled 5.0 36
PDB header:structural protein
Chain: U: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21
48d1zavu1



not modelled 5.0 36
Fold:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Superfamily:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
Family:Ribosomal protein L7/12, oligomerisation (N-terminal) domain
49c1zaxY_



not modelled 5.0 36
PDB header:structural protein
Chain: Y: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b
50c1zavX_



not modelled 5.0 36
PDB header:structural protein
Chain: X: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p21
51c1zaxX_



not modelled 5.0 36
PDB header:structural protein
Chain: X: PDB Molecule:50s ribosomal protein l7/l12;
PDBTitle: ribosomal protein l10-l12(ntd) complex, space group p212121,2 form b

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below