Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3501c_(yrbE4A)_3920276_3921040
DateFri Aug 9 18:20:17 BST 2019
Unique Job ID7fb979e27e8a3e3a
SequenceLIQQLAVPAR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.135 Y:47.550 Z:70.378
Model (left) based on template c6ic4H_
Top template information
PDB header:protein transport
Chain: H: PDB Molecule:abc transporter permease;
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
Confidence and coverage
Confidence:100.0% Coverage: 98%
248 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

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Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ic4H_



100.0 24
PDB header:protein transport
Chain: H: PDB Molecule:abc transporter permease;
PDBTitle: cryo-em structure of the a. baumannii mla complex at 8.7 a resolution
2c5x5yG_



84.3 15
PDB header:membrane protein
Chain: G: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
3c5l75F_



69.1 15
PDB header:transport protein
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: a protein structure
4c5l75G_



68.1 27
PDB header:transport protein
Chain: G: PDB Molecule:fig000906: predicted permease;
PDBTitle: a protein structure
5c6mjpG_



54.9 11
PDB header:lipid transport
Chain: G: PDB Molecule:lps export abc transporter permease lptg;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
6c5x5yF_



30.8 15
PDB header:membrane protein
Chain: F: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
7c5xu1M_



27.2 15
PDB header:transport protein
Chain: M: PDB Molecule:abc transporter permeae;
PDBTitle: structure of a non-canonical abc transporter from streptococcus2 pneumoniae r6
8c6mjpF_



22.4 14
PDB header:lipid transport
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
9c2yvxD_



19.6 22
PDB header:transport protein
Chain: D: PDB Molecule:mg2+ transporter mgte;
PDBTitle: crystal structure of magnesium transporter mgte
10d2hafa1



18.5 50
Fold:VC0467-like
Superfamily:VC0467-like
Family:VC0467-like
11c1abzA_



17.9 25
PDB header:de novo design
Chain: A: PDB Molecule:alpha-t-alpha;
PDBTitle: alpha-t-alpha, a de novo designed peptide, nmr, 232 structures
12c2kn8A_



16.7 29
PDB header:protein binding, dna binding protein
Chain: A: PDB Molecule:dna cleavage and packaging protein large subunit, ul89;
PDBTitle: nmr structure of the c-terminal domain of pul89
13c5ghaF_



15.5 30
PDB header:transferase/transport protein
Chain: F: PDB Molecule:sulfur carrier ttub;
PDBTitle: sulfur transferase ttua in complex with sulfur carrier ttub
14c2aj2A_



13.4 50
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical upf0301 protein vc0467;
PDBTitle: x-ray crystal structure of protein vc0467 from vibrio2 cholerae. northeast structural genomics consortium target3 vcr8.
15c5nikK_



12.8 20
PDB header:transport protein
Chain: K: PDB Molecule:macrolide export atp-binding/permease protein macb;
PDBTitle: structure of the macab-tolc abc-type tripartite multidrug efflux pump
16d2ieaa3



12.6 21
Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Transketolase C-terminal domain-like
17c2hv8D_



12.3 14
PDB header:protein transport
Chain: D: PDB Molecule:rab11 family-interacting protein 3;
PDBTitle: crystal structure of gtp-bound rab11 in complex with fip3
18c6qvcB_



12.2 14
PDB header:membrane protein
Chain: B: PDB Molecule:chloride channel protein 1;
PDBTitle: cryoem structure of the human clc-1 chloride channel, cbs state 1
19c2m67A_



12.1 6
PDB header:transport protein
Chain: A: PDB Molecule:merf;
PDBTitle: full-length mercury transporter protein merf in lipid bilayer2 membranes
20d1z96a1



11.8 24
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
21d1rhzb_



not modelled 11.8 10
Fold:Single transmembrane helix
Superfamily:Preprotein translocase SecE subunit
Family:Preprotein translocase SecE subunit
22c4migC_



not modelled 11.3 29
PDB header:oxidoreductase
Chain: C: PDB Molecule:pyranose 2-oxidase;
PDBTitle: pyranose 2-oxidase from phanerochaete chrysosporium, recombinant wild2 type
23d2k0bx1



not modelled 9.7 20
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
24c2mfrA_



not modelled 9.6 21
PDB header:transferase
Chain: A: PDB Molecule:insulin receptor;
PDBTitle: solution structure of the transmembrane domain of the insulin receptor2 in micelles
25d1g7oa1



not modelled 9.2 15
Fold:GST C-terminal domain-like
Superfamily:GST C-terminal domain-like
Family:Glutathione S-transferase (GST), C-terminal domain
26c1cf3A_



not modelled 8.9 17
PDB header:oxidoreductase(flavoprotein)
Chain: A: PDB Molecule:protein (glucose oxidase);
PDBTitle: glucose oxidase from apergillus niger
27c2hg5D_



not modelled 8.6 7
PDB header:membrane protein
Chain: D: PDB Molecule:kcsa channel;
PDBTitle: cs+ complex of a k channel with an amide to ester substitution in the2 selectivity filter
28c3dfmA_



not modelled 8.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:teicoplanin pseudoaglycone deacetylase orf2;
PDBTitle: the crystal structure of the zinc inhibited form of2 teicoplanin deacetylase orf2
29c2jy8A_



not modelled 7.8 20
PDB header:protein binding
Chain: A: PDB Molecule:ubiquitin-binding protein p62;
PDBTitle: nmr structure of the ubiquitin associated (uba) domain of2 p62 (sqstm1) in complex with ubiquitin. rdc refined
30c2wwbB_



not modelled 7.4 11
PDB header:ribosome
Chain: B: PDB Molecule:protein transport protein sec61 subunit gamma;
PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the actively2 translating wheat germ 80s ribosome
31c3vvpA_



not modelled 7.0 18
PDB header:transport protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of mate in complex with br-nrf
32c1vmaA_



not modelled 6.8 25
PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
33c5mg3D_



not modelled 6.6 8
PDB header:chaperone
Chain: D: PDB Molecule:protein translocase subunit secd;
PDBTitle: em fitted model of bacterial holo-translocon
34d1q74a_



not modelled 6.5 36
Fold:LmbE-like
Superfamily:LmbE-like
Family:LmbE-like
35d2do8a1



not modelled 6.3 40
Fold:VC0467-like
Superfamily:VC0467-like
Family:VC0467-like
36c4ak9A_



not modelled 6.0 25
PDB header:protein transport
Chain: A: PDB Molecule:cpftsy;
PDBTitle: structure of chloroplast ftsy from physcomitrella patens
37c5l3sF_



not modelled 5.9 33
PDB header:protein transport
Chain: F: PDB Molecule:signal recognition particle receptor ftsy;
PDBTitle: structure of the gtpase heterodimer of crenarchaeal srp54 and ftsy
38c2j7pA_



not modelled 5.7 25
PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
39d2hjqa1



not modelled 5.5 20
Fold:LEM/SAP HeH motif
Superfamily:Rho N-terminal domain-like
Family:YqbF C-terminal domain-like
40c6cy1B_



not modelled 5.5 33
PDB header:signaling protein
Chain: B: PDB Molecule:signal recognition particle receptor ftsy;
PDBTitle: crystal structure of signal recognition particle receptor ftsy from2 elizabethkingia anophelis
41c3mk7F_



not modelled 5.3 11
PDB header:oxidoreductase
Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p;
PDBTitle: the structure of cbb3 cytochrome oxidase
42c3b9qA_



not modelled 5.2 25
PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
43d1i94m_



not modelled 5.2 75
Fold:S13-like H2TH domain
Superfamily:S13-like H2TH domain
Family:Ribosomal protein S13

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below