Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3517_(-)_3953610_3954449
DateFri Aug 9 18:20:19 BST 2019
Unique Job ID45b0a52329944cce
SequenceVIEPFLGSEA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.990 Y:43.926 Z:38.192
Model (left) based on template c3r3pB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:mobile intron protein;
PDBTitle: homing endonuclease i-bth0305i catalytic domain
Confidence and coverage
Confidence: 99.7% Coverage: 33%
93 residues ( 33% of your sequence) have been modelled with 99.7% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3r3pB_



99.7 15
PDB header:hydrolase
Chain: B: PDB Molecule:mobile intron protein;
PDBTitle: homing endonuclease i-bth0305i catalytic domain
2c3hrlA_



99.4 19
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:endonuclease-like protein;
PDBTitle: crystal structure of a putative endonuclease-like protein (ngo0050)2 from neisseria gonorrhoeae
3d1cw0a_



99.3 18
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Very short patch repair (VSR) endonuclease
4d1vsra_



98.1 18
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Very short patch repair (VSR) endonuclease
5c4oq2A_



96.5 12
PDB header:hydrolase
Chain: A: PDB Molecule:restriction endonuclease pvurts1 i;
PDBTitle: 5hmc specific restriction endonuclease pvurts1i
6c4parC_



96.1 22
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:uncharacterized protein abasi;
PDBTitle: the 5-hydroxymethylcytosine-specific restriction enzyme abasi in a2 complex with product-like dna
7c6rdu2_



95.7 12
PDB header:proton transport
Chain: 2: PDB Molecule:asa-2: polytomella f-atp synthase associated subunit 2;
PDBTitle: cryo-em structure of polytomella f-atp synthase, rotary substate 1e,2 monomer-masked refinement
8c1zelA_



81.7 20
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein rv2827c;
PDBTitle: crystal structure of rv2827c protein from mycobacterium tuberculosis
9d1zela2



74.9 19
Fold:Rv2827c C-terminal domain-like
Superfamily:Rv2827c C-terminal domain-like
Family:Rv2827c C-terminal domain-like
10d1m0da_



59.9 17
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Endonuclease I (Holliday junction resolvase)
11d2fcla1



25.0 15
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:TM1012-like
12c4ytkA_



11.6 27
PDB header:transcription
Chain: A: PDB Molecule:transcription elongation factor spt5;
PDBTitle: structure of the kow1-linker1 domain of transcription elongation2 factor spt5
13d2fuka1



11.2 21
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Atu1826-like
14d1tfea_



10.7 10
Fold:EF-Ts domain-like
Superfamily:Elongation factor Ts (EF-Ts), dimerisation domain
Family:Elongation factor Ts (EF-Ts), dimerisation domain
15c2hw2A_



10.6 8
PDB header:transferase
Chain: A: PDB Molecule:rifampin adp-ribosyl transferase;
PDBTitle: crystal structure of rifampin adp-ribosyl transferase in complex with2 rifampin
16c4gqzB_



9.5 22
PDB header:metal binding protein
Chain: B: PDB Molecule:putative periplasmic or exported protein;
PDBTitle: crystal structure of s.cuep
17d1jg5a_



9.0 21
Fold:GTP cyclohydrolase I feedback regulatory protein, GFRP
Superfamily:GTP cyclohydrolase I feedback regulatory protein, GFRP
Family:GTP cyclohydrolase I feedback regulatory protein, GFRP
18d2ieaa2



7.0 12
Fold:Thiamin diphosphate-binding fold (THDP-binding)
Superfamily:Thiamin diphosphate-binding fold (THDP-binding)
Family:TK-like PP module
19d1ccwa_



6.9 21
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
20c5vrvA_



6.4 13
PDB header:hydrolase,oxidoreductase
Chain: A: PDB Molecule:protein regulated by acid ph;
PDBTitle: 2.05 angstrom resolution crystal structure of c-terminal domain2 (duf2156) of putative lysylphosphatidylglycerol synthetase from3 agrobacterium fabrum.
21d7reqa2



not modelled 5.7 17
Fold:Flavodoxin-like
Superfamily:Cobalamin (vitamin B12)-binding domain
Family:Cobalamin (vitamin B12)-binding domain
22c2qqdG_



not modelled 5.5 14
PDB header:lyase
Chain: G: PDB Molecule:pyruvoyl-dependent arginine decarboxylase (ec
PDBTitle: n47a mutant of pyruvoyl-dependent arginine decarboxylase2 from methanococcus jannashii
23c3n53B_



not modelled 5.5 11
PDB header:transcription
Chain: B: PDB Molecule:response regulator receiver modulated diguanylate cyclase;
PDBTitle: crystal structure of a response regulator receiver modulated2 diguanylate cyclase from pelobacter carbinolicus
24c5xoxD_



not modelled 5.3 16
PDB header:transferase
Chain: D: PDB Molecule:trna(his) guanylyltransferase;
PDBTitle: crystal structure of trna(his) guanylyltranserase from saccharomyces2 cerevisiae

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite