Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3527_(-)_3963784_3964233
DateFri Aug 9 18:20:20 BST 2019
Unique Job ID88923609b15355ab
SequenceMPDDQPAVPD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:18.774 Y:27.751 Z:24.699
Model (left) based on template c3h0gL_
Top template information
PDB header:transcription
Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii subunit rpabc4;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
Confidence and coverage
Confidence: 70.5% Coverage: 11%
17 residues ( 11% of your sequence) have been modelled with 70.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3h0gL_
70.5 29
PDB header:transcription
Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii subunit rpabc4;
PDBTitle: rna polymerase ii from schizosaccharomyces pombe
2c5x51X_
66.0 35
PDB header:transferase
Chain: X: PDB Molecule:rna polymerase subunit, found in rna polymerase complexes
PDBTitle: rna polymerase ii from komagataella pastoris (type-3 crystal)
3c5flmL_
65.8 29
PDB header:transcription
Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii subunit rpabc4;
PDBTitle: structure of transcribing mammalian rna polymerase ii
4c2ja6L_
59.9 24
PDB header:transferase
Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii 7.7 kda
PDBTitle: cpd lesion containing rna polymerase ii elongation complex b
5c2l6lA_
34.0 15
PDB header:chaperone
Chain: A: PDB Molecule:dnaj homolog subfamily c member 24;
PDBTitle: solution structure of human j-protein co-chaperone, dph4
6d1f2ka_
25.3 25
Fold:Profilin-like
Superfamily:Profilin (actin-binding protein)
Family:Profilin (actin-binding protein)
7d1ppja2
24.2 23
Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:MPP-like
8c3davA_
23.7 15
PDB header:protein binding
Chain: A: PDB Molecule:profilin;
PDBTitle: schizosaccharomyces pombe profilin crystallized from sodium formate
9c3nojA_
23.7 24
PDB header:lyase
Chain: A: PDB Molecule:4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate
PDBTitle: the structure of hmg/cha aldolase from the protocatechuate degradation2 pathway of pseudomonas putida
10c5wbuQ_
20.8 62
PDB header:transferase
Chain: Q: PDB Molecule:proline-rich akt1 substrate 1;
PDBTitle: crystal structure of mtor(deltan)-mlst8-pras40(alpha-helix & beta-2 strand) complex
11c5wbuR_
20.8 62
PDB header:transferase
Chain: R: PDB Molecule:proline-rich akt1 substrate 1;
PDBTitle: crystal structure of mtor(deltan)-mlst8-pras40(alpha-helix & beta-2 strand) complex
12d2csha2
20.7 20
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
13c3w0fA_
19.3 31
PDB header:hydrolase
Chain: A: PDB Molecule:endonuclease 8-like 3;
PDBTitle: crystal structure of mouse endonuclease viii-like 3 (mneil3)
14d1ypra_
17.9 13
Fold:Profilin-like
Superfamily:Profilin (actin-binding protein)
Family:Profilin (actin-binding protein)
15c5vhvB_
17.8 23
PDB header:hydrolase/dna
Chain: B: PDB Molecule:alkylpurine dna glycosylase alkc;
PDBTitle: pseudomonas fluorescens alkylpurine dna glycosylase alkc bound to dna2 containing an oxocarbenium-intermediate analog
16c2kvfA_
17.4 25
PDB header:transcription
Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32;
PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein
17d1g5ua_
17.3 23
Fold:Profilin-like
Superfamily:Profilin (actin-binding protein)
Family:Profilin (actin-binding protein)
18c2yewG_
16.5 33
PDB header:virus
Chain: G: PDB Molecule:capsid protein;
PDBTitle: modeling barmah forest virus structural proteins
19c2kj8A_
15.0 16
PDB header:dna binding protein
Chain: A: PDB Molecule:putative prophage cps-53 integrase;
PDBTitle: nmr structure of fragment 87-196 from the putative phage2 integrase ints of e. coli: northeast structural genomics3 consortium target er652a, psi-2
20d1wyka_
13.8 33
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
21c2l09A_
not modelled 13.6 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:asr4154 protein;
PDBTitle: solution nmr structure of protein asr4154 from nostoc sp. pcc71202 northeast structural genomics consortium target id nsr143
22d1acfa_
not modelled 13.6 21
Fold:Profilin-like
Superfamily:Profilin (actin-binding protein)
Family:Profilin (actin-binding protein)
23c1kxfA_
not modelled 13.2 33
PDB header:viral protein
Chain: A: PDB Molecule:sindbis virus capsid protein;
PDBTitle: sindbis virus capsid, (wild-type) residues 1-264, tetragonal crystal2 form (form ii)
24d1ep5a_
not modelled 13.1 33
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
25d1vcpa_
not modelled 12.9 33
Fold:Trypsin-like serine proteases
Superfamily:Trypsin-like serine proteases
Family:Viral proteases
26d1hxra_
not modelled 12.7 36
Fold:Mss4-like
Superfamily:Mss4-like
Family:RabGEF Mss4
27c3zeyV_
not modelled 12.5 31
PDB header:ribosome
Chain: V: PDB Molecule:ribosomal protein s26, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
28d3bkjh1
not modelled 12.5 29
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
29d1d1ja_
not modelled 12.3 13
Fold:Profilin-like
Superfamily:Profilin (actin-binding protein)
Family:Profilin (actin-binding protein)
30d2fu5a1
not modelled 12.3 36
Fold:Mss4-like
Superfamily:Mss4-like
Family:RabGEF Mss4
31d1vq0a2
not modelled 12.0 17
Fold:HSP33 redox switch-like
Superfamily:HSP33 redox switch-like
Family:HSP33 redox switch-like
32d1cqaa_
not modelled 11.9 21
Fold:Profilin-like
Superfamily:Profilin (actin-binding protein)
Family:Profilin (actin-binding protein)
33d1vzya2
not modelled 11.3 17
Fold:HSP33 redox switch-like
Superfamily:HSP33 redox switch-like
Family:HSP33 redox switch-like
34c6mx7C_
not modelled 11.2 33
PDB header:virus
Chain: C: PDB Molecule:capsid;
PDBTitle: cryoem structure of chimeric eastern equine encephalitis virus:2 genome-binding capsid n-terminal domain
35c2kaoA_
not modelled 11.1 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:methionine-r-sulfoxide reductase b1;
PDBTitle: structure of reduced mouse methionine sulfoxide reductase b12 (sec95cys mutant)
36d2gmga1
not modelled 10.7 40
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:PF0610-like
37c2i5oA_
not modelled 10.2 42
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase eta;
PDBTitle: solution structure of the ubiquitin-binding zinc finger2 (ubz) domain of the human dna y-polymerase eta
38c5xyia_
not modelled 9.7 25
PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein sa;
PDBTitle: small subunit of trichomonas vaginalis ribosome
39c3hcjB_
not modelled 9.6 25
PDB header:oxidoreductase
Chain: B: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: structure of msrb from xanthomonas campestris (oxidized2 form)
40c1vq0A_
not modelled 9.0 17
PDB header:chaperone
Chain: A: PDB Molecule:33 kda chaperonin;
PDBTitle: crystal structure of 33 kda chaperonin (heat shock protein 33 homolog)2 (hsp33) (tm1394) from thermotoga maritima at 2.20 a resolution
41d1nvpd1
not modelled 8.9 13
Fold:Transcription factor IIA (TFIIA), alpha-helical domain
Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain
Family:Transcription factor IIA (TFIIA), alpha-helical domain
42c4uj3B_
not modelled 8.6 18
PDB header:transport protein
Chain: B: PDB Molecule:rab-3a-interacting protein;
PDBTitle: crystal structure of human rab11-rabin8-fip3
43d1xjha_
not modelled 8.5 22
Fold:HSP33 redox switch-like
Superfamily:HSP33 redox switch-like
Family:HSP33 redox switch-like
44d1twfj_
not modelled 8.0 38
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:RNA polymerase subunit RPB10
Family:RNA polymerase subunit RPB10
45d1nh2d1
not modelled 7.9 25
Fold:Transcription factor IIA (TFIIA), alpha-helical domain
Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain
Family:Transcription factor IIA (TFIIA), alpha-helical domain
46c2eluA_
not modelled 7.9 50
PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 5th c2h2 zinc finger of human2 zinc finger protein 406
47d1ef4a_
not modelled 7.9 38
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:RNA polymerase subunit RPB10
Family:RNA polymerase subunit RPB10
48c3j38a_
not modelled 7.8 31
PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein sa;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
49d2cy3a_
not modelled 7.7 50
Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Cytochrome c3-like
50d2hfqa1
not modelled 7.7 71
Fold:NE1680-like
Superfamily:NE1680-like
Family:NE1680-like
51c2hfqA_
not modelled 7.7 71
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: nmr structure of protein ne1680 from nitrosomonas europaea:2 northeast structural genomics consortium target net5
52d1xm0a1
not modelled 7.4 25
Fold:Mss4-like
Superfamily:Mss4-like
Family:SelR domain
53c3u5ga_
not modelled 7.3 25
PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein s0-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome b
54c5xxua_
not modelled 7.2 19
PDB header:ribosome
Chain: A: PDB Molecule:ribosomal protein us2;
PDBTitle: small subunit of toxoplasma gondii ribosome
55c2xzn5_
not modelled 7.2 25
PDB header:ribosome
Chain: 5: PDB Molecule:ribosomal protein s26e containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
56d2fkla1
not modelled 7.0 35
Fold:Dodecin subunit-like
Superfamily:Amyloid beta a4 protein copper binding domain (domain 2)
Family:Amyloid beta a4 protein copper binding domain (domain 2)
57c3h34A_
not modelled 7.0 44
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c7;
PDBTitle: ppce, a cytochrome c7 from geobacter sulfurreducens
58c4qiwV_
not modelled 6.9 31
PDB header:transcription
Chain: V: PDB Molecule:dna-directed rna polymerase subunit n;
PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
59d1k81a_
not modelled 6.7 11
Fold:Zinc-binding domain of translation initiation factor 2 beta
Superfamily:Zinc-binding domain of translation initiation factor 2 beta
Family:Zinc-binding domain of translation initiation factor 2 beta
60c2n25A_
not modelled 6.5 57
PDB header:dna binding protein
Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 17;
PDBTitle: solution structure of miz-1 zinc finger 2
61c2kvhA_
not modelled 6.5 30
PDB header:transcription
Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 32;
PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein
62d1wfha_
not modelled 6.5 50
Fold:AN1-like Zinc finger
Superfamily:AN1-like Zinc finger
Family:AN1-like Zinc finger
63c3nctC_
not modelled 6.4 50
PDB header:dna binding protein, chaperone
Chain: C: PDB Molecule:protein psib;
PDBTitle: x-ray crystal structure of the bacterial conjugation factor psib, a2 negative regulator of reca
64c2pmzN_
not modelled 6.4 40
PDB header:translation, transferase
Chain: N: PDB Molecule:dna-directed rna polymerase subunit n;
PDBTitle: archaeal rna polymerase from sulfolobus solfataricus
65c1x5mA_
not modelled 6.3 20
PDB header:apoptosis, signaling protein
Chain: A: PDB Molecule:calcyclin-binding protein;
PDBTitle: solution structure of the core domain of calcyclin binding2 protein; siah-interacting protein (sip)
66c2vy8A_
not modelled 6.2 18
PDB header:transcription
Chain: A: PDB Molecule:polymerase basic protein 2;
PDBTitle: the 627-domain from influenza a virus polymerase pb22 subunit with glu-627
67c3tsuA_
not modelled 6.2 33
PDB header:transferase
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate
68c1zecA_
not modelled 6.1 71
PDB header:viral peptide
Chain: A: PDB Molecule:nef1-25;
PDBTitle: nmr solution structure of nef1-25, 20 structures
69d2ejna1
not modelled 6.1 22
Fold:Uteroglobin-like
Superfamily:Uteroglobin-like
Family:Uteroglobin-like
70c2m3kA_
not modelled 6.0 17
PDB header:motor protein
Chain: A: PDB Molecule:minor pilin comp;
PDBTitle: global fold of the type iv pilin comp from neisseria meningitidis
71c6driA_
not modelled 6.0 71
PDB header:immune system
Chain: A: PDB Molecule:acan1;
PDBTitle: nmr solution structure of acan1 from the ancylostoma caninum hookworm
72c6ehqM_
not modelled 5.9 23
PDB header:oxidoreductase
Chain: M: PDB Molecule:hydrogenase-2 large chain;
PDBTitle: e. coli hydrogenase-2 (as isolated form).
73c1o7dA_
not modelled 5.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:lysosomal alpha-mannosidase;
PDBTitle: the structure of the bovine lysosomal a-mannosidase suggests a novel2 mechanism for low ph activation
74c4qiwP_
not modelled 5.8 27
PDB header:transcription
Chain: P: PDB Molecule:dna-directed rna polymerase subunit p;
PDBTitle: crystal structure of euryarchaeal rna polymerase from thermococcus2 kodakarensis
75c2d0sA_
not modelled 5.7 27
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: crystal structure of the cytochrome c552 from moderate2 thermophilic bacterium, hydrogenophilus thermoluteolus
76d3caoa_
not modelled 5.6 60
Fold:Multiheme cytochromes
Superfamily:Multiheme cytochromes
Family:Cytochrome c3-like
77d1ycca_
not modelled 5.5 30
Fold:Cytochrome c
Superfamily:Cytochrome c
Family:monodomain cytochrome c
78d1uj8a1
not modelled 5.5 40
Fold:Another 3-helical bundle
Superfamily:IscX-like
Family:IscX-like
79c4v30A_
not modelled 5.4 27
PDB header:signaling protein
Chain: A: PDB Molecule:cereblon isoform 4;
PDBTitle: cereblon isoform 4 from magnetospirillum gryphiswaldense in2 complex with lenalidomide
80c2md0A_
not modelled 5.4 71
PDB header:immune system
Chain: A: PDB Molecule:ack1;
PDBTitle: solution structure of shk-like immunomodulatory peptide from2 ancylostoma caninum (hookworm)
81c2m0dA_
not modelled 5.3 30
PDB header:transcription
Chain: A: PDB Molecule:zinc finger and btb domain-containing protein 17;
PDBTitle: solution structure of miz-1 zinc finger 5
82c2jtxA_
not modelled 5.3 29
PDB header:transcription
Chain: A: PDB Molecule:transcription initiation factor iie subunit
PDBTitle: nmr structure of the tfiie-alpha carboxyl terminus
83c2dcuB_
not modelled 5.3 11
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor 2 beta subunit;
PDBTitle: crystal structure of translation initiation factor aif2betagamma2 heterodimer with gdp
84c4cv5A_
not modelled 5.3 29
PDB header:cell cycle
Chain: A: PDB Molecule:general negative regulator of transcription subunit 1;
PDBTitle: yeast not1 cn9bd-caf40 complex
85c2k8dA_
not modelled 5.3 33
PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase msrb;
PDBTitle: solution structure of a zinc-binding methionine sulfoxide reductase
86c2w9kA_
not modelled 5.3 15
PDB header:electron transport
Chain: A: PDB Molecule:cytochrome c;
PDBTitle: crithidia fasciculata cytochrome c
87d1rk8c_
not modelled 5.2 43
Fold:WW domain-like
Superfamily:Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
Family:Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
88c1rk8C_
not modelled 5.2 43
PDB header:translation
Chain: C: PDB Molecule:within the bgcn gene intron protein;
PDBTitle: structure of the cytosolic protein pym bound to the mago-2 y14 core of the exon junction complex
89c3h4nB_
not modelled 5.2 50
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c7;
PDBTitle: ppcd, a cytochrome c7 from geobacter sulfurreducens
90c2oxoA_
not modelled 5.1 19
PDB header:dna binding protein
Chain: A: PDB Molecule:integrase;
PDBTitle: crystallization and structure determination of the core-2 binding domain of bacteriophage lambda integrase

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