Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3528c_(-)_3964658_3965371
DateFri Aug 9 18:20:20 BST 2019
Unique Job ID7f183a30f8d98641
SequenceMMLDRLRQGG ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:29.602 Y:32.751 Z:29.334
Model (left) based on template c3tkaA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase h;
PDBTitle: crystal structure and solution saxs of methyltransferase rsmh from2 e.coli
Confidence and coverage
Confidence: 39.5% Coverage: 26%
61 residues ( 26% of your sequence) have been modelled with 39.5% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3tkaA_



39.5 20
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase h;
PDBTitle: crystal structure and solution saxs of methyltransferase rsmh from2 e.coli
2c4er3A_



29.3 20
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-79 specific;
PDBTitle: crystal structure of human dot1l in complex with inhibitor epz004777
3c1nw3A_



28.7 20
PDB header:transferase
Chain: A: PDB Molecule:histone methyltransferase dot1l;
PDBTitle: structure of the catalytic domain of human dot1l, a non-set domain2 nucleosomal histone methyltransferase
4d1nw3a_



28.7 20
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Catalytic, N-terminal domain of histone methyltransferase Dot1l
5c2bg5C_



28.6 25
PDB header:transferase
Chain: C: PDB Molecule:phosphoenolpyruvate-protein kinase;
PDBTitle: crystal structure of the phosphoenolpyruvate-binding enzyme i-domain2 from the thermoanaerobacter tengcongensis pep: sugar3 phosphotransferase system (pts)
6c3u21B_



28.3 38
PDB header:transcription regulation, dna binding
Chain: B: PDB Molecule:nuclear factor related to kappa-b-binding protein;
PDBTitle: crystal structure of a fragment of nuclear factor related to kappa-b-2 binding protein (residues 370-495) (nfrkb) from homo sapiens at 2.183 a resolution
7c1fpqA_



27.1 22
PDB header:transferase
Chain: A: PDB Molecule:isoliquiritigenin 2'-o-methyltransferase;
PDBTitle: crystal structure analysis of selenomethionine substituted chalcone o-2 methyltransferase
8c1m6yA_



25.1 12
PDB header:transferase
Chain: A: PDB Molecule:s-adenosyl-methyltransferase mraw;
PDBTitle: crystal structure analysis of tm0872, a putative sam-dependent2 methyltransferase, complexed with sah
9d1fp1d2



24.0 21
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Plant O-methyltransferase, C-terminal domain
10c4qdkB_



22.7 16
PDB header:transferase
Chain: B: PDB Molecule:magnesium-protoporphyrin o-methyltransferase;
PDBTitle: crystal structure of magnesium protoporphyrin ix methyltransferase2 (chlm) from synechocystis pcc 6803 with bound sah
11c4p7cB_



22.6 15
PDB header:transferase
Chain: B: PDB Molecule:trna (mo5u34)-methyltransferase;
PDBTitle: crystal structure of putative methyltransferase from pseudomonas2 syringae pv. tomato
12c1fp2A_



22.6 24
PDB header:transferase
Chain: A: PDB Molecule:isoflavone o-methyltransferase;
PDBTitle: crystal structure analysis of isoflavone o-methyltransferase
13c6ecvB_



20.4 10
PDB header:transferase
Chain: B: PDB Molecule:stid protein;
PDBTitle: stid o-mt residues 976-1266
14d2fpwa1



20.2 14
Fold:HAD-like
Superfamily:HAD-like
Family:Histidinol phosphatase-like
15c3lw6A_



19.3 20
PDB header:transferase
Chain: A: PDB Molecule:beta-4-galactosyltransferase 7;
PDBTitle: crystal structure of drosophila beta1,4-galactosyltransferase-7
16c4a6dA_



18.6 18
PDB header:transferase
Chain: A: PDB Molecule:hydroxyindole o-methyltransferase;
PDBTitle: crystal structure of human n-acetylserotonin2 methyltransferase (asmt) in complex with sam
17c6i5zA_



18.5 20
PDB header:transferase
Chain: A: PDB Molecule:o-methyltransferase 1;
PDBTitle: papaver somniferum o-methyltransferase
18c6gkvB_



18.2 15
PDB header:transferase
Chain: B: PDB Molecule:coclaurine n-methyltransferase;
PDBTitle: crystal structure of coclaurine n-methyltransferase (cnmt) bound to n-2 methylheliamine and sah
19c3udsA_



17.9 22
PDB header:transferase
Chain: A: PDB Molecule:inositol-pentakisphosphate 2-kinase;
PDBTitle: inositol 1,3,4,5,6-pentakisphosphate 2-kinase from a. thaliana in2 complex with adp.
20c3f1iH_



17.6 38
PDB header:protein binding
Chain: H: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase
PDBTitle: human escrt-0 core complex
21c3p2kA_



not modelled 17.5 14
PDB header:transferase
Chain: A: PDB Molecule:16s rrna methylase;
PDBTitle: structure of an antibiotic related methyltransferase
22c3mq2A_



not modelled 17.5 17
PDB header:transferase
Chain: A: PDB Molecule:16s rrna methyltransferase;
PDBTitle: crystal structure of 16s rrna methyltranferase kamb
23d2bo4a1



not modelled 17.2 29
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:MGS-like
24d1vmda_



not modelled 16.3 29
Fold:Methylglyoxal synthase-like
Superfamily:Methylglyoxal synthase-like
Family:Methylglyoxal synthase, MgsA
25c6ec3C_



not modelled 16.2 21
PDB header:transferase, oxidoreductase
Chain: C: PDB Molecule:methyltransferase domain-containing protein;
PDBTitle: crystal structure of evdmo1
26c2zufA_



not modelled 15.7 24
PDB header:ligase/rna
Chain: A: PDB Molecule:arginyl-trna synthetase;
PDBTitle: crystal structure of pyrococcus horikoshii arginyl-trna2 synthetase complexed with trna(arg)
27c3gqqD_



not modelled 15.7 26
PDB header:splicing
Chain: D: PDB Molecule:protein unc-119 homolog a;
PDBTitle: crystal structure of the human retinal protein 4 (unc-1192 homolog a). northeast structural genomics consortium3 target hr3066a
28c5wp5A_



not modelled 15.4 14
PDB header:transferase
Chain: A: PDB Molecule:phosphomethylethanolamine n-methyltransferase 2;
PDBTitle: arabidopsis thaliana phosphoethanolamine n-methyltransferase 22 (atpmt2) in complex with sah
29c1f7uA_



not modelled 15.2 26
PDB header:ligase/rna
Chain: A: PDB Molecule:arginyl-trna synthetase;
PDBTitle: crystal structure of the arginyl-trna synthetase complexed with the2 trna(arg) and l-arg
30d1gg3a3



not modelled 13.1 25
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:First domain of FERM
31d1fp2a2



not modelled 13.1 19
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Plant O-methyltransferase, C-terminal domain
32c4m8nB_



not modelled 11.6 25
PDB header:signaling protein
Chain: B: PDB Molecule:plexinc1 intracellular region;
PDBTitle: crystal structure of plexinc1/rap1b complex
33c3d9oB_



not modelled 10.3 15
PDB header:transcription
Chain: B: PDB Molecule:rna-binding protein 16;
PDBTitle: snapshots of the rna processing factor scaf8 bound to different2 phosphorylated forms of the carboxy-terminal domain of rna-polymerase3 ii
34d1ef1a3



not modelled 10.3 31
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:First domain of FERM
35d2p7ja1



not modelled 9.9 12
Fold:Profilin-like
Superfamily:Sensory domain-like
Family:YkuI C-terminal domain-like
36c4kdcA_



not modelled 9.8 17
PDB header:transferase
Chain: A: PDB Molecule:3-demethylubiquinone-9 3-methyltransferase;
PDBTitle: crystal structure of ubig
37c2zkqb_



not modelled 9.7 12
PDB header:ribosomal protein/rna
Chain: B: PDB Molecule:rna expansion segment es3;
PDBTitle: structure of a mammalian ribosomal 40s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
38c1x1aA_



not modelled 9.6 15
PDB header:transferase
Chain: A: PDB Molecule:crtf-related protein;
PDBTitle: crystal structure of bchu complexed with s-adenosyl-l-methionine
39c1kyzC_



not modelled 9.5 23
PDB header:transferase
Chain: C: PDB Molecule:caffeic acid 3-o-methyltransferase;
PDBTitle: crystal structure analysis of caffeic acid/5-hydroxyferulic2 acid 3/5-o-methyltransferase ferulic acid complex
40d2ge7a1



not modelled 9.5 50
Fold:Nucleocapsid protein dimerization domain
Superfamily:Nucleocapsid protein dimerization domain
Family:Coronavirus nucleocapsid protein
41d1skyb1



not modelled 9.4 10
Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
42c4xcxA_



not modelled 9.4 10
PDB header:transferase
Chain: A: PDB Molecule:small rna 2'-o-methyltransferase;
PDBTitle: methyltransferase domain of small rna 2'-o-methyltransferase
43d1f7ua2



not modelled 9.4 26
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
44d2nefa_



not modelled 9.3 16
Fold:Regulatory factor Nef
Superfamily:Regulatory factor Nef
Family:Regulatory factor Nef
45c4uw2D_



not modelled 9.2 24
PDB header:immune system
Chain: D: PDB Molecule:csm1;
PDBTitle: crystal structure of csm1 in t.onnurineus
46c5kn4B_



not modelled 9.1 16
PDB header:transferase
Chain: B: PDB Molecule:pavine n-methyltransferase;
PDBTitle: pavine n-methyltransferase apoenzyme ph 6.0
47c4gokG_



not modelled 9.0 26
PDB header:signaling protein
Chain: G: PDB Molecule:protein unc-119 homolog a;
PDBTitle: the crystal structure of arl2gppnhp in complex with unc119a
48c3lwgB_



not modelled 9.0 17
PDB header:unknown function
Chain: B: PDB Molecule:hp0420 homologue;
PDBTitle: crystal structure of hp0420-homologue c46a from helicobacter felis
49c2ifsA_



not modelled 9.0 25
PDB header:signaling protein
Chain: A: PDB Molecule:wiskott-aldrich syndrome protien interacting protein and
PDBTitle: structure of the n-wasp evh1 domain in complex with an extended wip2 peptide
50d1b93a_



not modelled 8.8 29
Fold:Methylglyoxal synthase-like
Superfamily:Methylglyoxal synthase-like
Family:Methylglyoxal synthase, MgsA
51d2uubb1



not modelled 8.8 32
Fold:Flavodoxin-like
Superfamily:Ribosomal protein S2
Family:Ribosomal protein S2
52d2zpya3



not modelled 8.8 31
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:First domain of FERM
53d1f6va_



not modelled 8.7 17
Fold:C-terminal domain of B transposition protein
Superfamily:C-terminal domain of B transposition protein
Family:C-terminal domain of B transposition protein
54c3h2bB_



not modelled 8.6 16
PDB header:transferase
Chain: B: PDB Molecule:sam-dependent methyltransferase;
PDBTitle: crystal structure of the sam-dependent methyltransferase cg3271 from2 corynebacterium glutamicum in complex with s-adenosyl-l-homocysteine3 and pyrophosphate. northeast structural genomics consortium target4 cgr113a
55d2cjra1



not modelled 8.5 50
Fold:Nucleocapsid protein dimerization domain
Superfamily:Nucleocapsid protein dimerization domain
Family:Coronavirus nucleocapsid protein
56d2f43a1



not modelled 8.4 18
Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
57d3b5ha2



not modelled 8.2 28
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
58d1ni2a3



not modelled 8.1 31
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:First domain of FERM
59c5v75E_



not modelled 8.0 25
PDB header:structural protein
Chain: E: PDB Molecule:microcompartments protein;
PDBTitle: structure of haliangium ochraceum bmc-t ho-5816
60d2bcgg2



not modelled 7.8 27
Fold:FAD/NAD(P)-binding domain
Superfamily:FAD/NAD(P)-binding domain
Family:GDI-like N domain
61c6g13B_



not modelled 7.7 42
PDB header:viral protein
Chain: B: PDB Molecule:nucleoprotein;
PDBTitle: c-terminal domain of mers-cov nucleocapsid
62d1xzpa3



not modelled 7.6 29
Fold:Folate-binding domain
Superfamily:Folate-binding domain
Family:TrmE formyl-THF-binding domain
63c1xzqB_



not modelled 7.6 29
PDB header:hydrolase
Chain: B: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf
64d2ca1a1



not modelled 7.6 50
Fold:Nucleocapsid protein dimerization domain
Superfamily:Nucleocapsid protein dimerization domain
Family:Coronavirus nucleocapsid protein
65c1s1hB_



not modelled 7.5 10
PDB header:ribosome
Chain: B: PDB Molecule:40s ribosomal protein s0-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s4 ribosomal subunit is in file 1s1i.
66c4krhB_



not modelled 7.4 14
PDB header:transferase
Chain: B: PDB Molecule:phosphoethanolamine n-methyltransferase 2;
PDBTitle: semet haemonchus contortus phosphoethanolamine n-methyltransferase 22 in complex with s-adenosyl-l-methionine
67c3p9kD_



not modelled 7.4 20
PDB header:transferase
Chain: D: PDB Molecule:caffeic acid o-methyltransferase;
PDBTitle: crystal structure of perennial ryegrass lpomt1 complexed with s-2 adenosyl-l-homocysteine and coniferaldehyde
68c1s4pA_



not modelled 7.3 35
PDB header:transferase
Chain: A: PDB Molecule:glycolipid 2-alpha-mannosyltransferase;
PDBTitle: crystal structure of yeast alpha1,2-mannosyltransferase kre2p/mnt1p:2 ternary complex with gdp/mn and methyl-alpha-mannoside acceptor
69c5a08A_



not modelled 7.3 27
PDB header:transferase
Chain: A: PDB Molecule:probable mannosyltransferase ktr4;
PDBTitle: x-ray structure of the mannosyltransferase ktr4p from s. cerevisiae
70d1s4na_



not modelled 7.3 35
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:Glycolipid 2-alpha-mannosyltransferase
71c4irqB_



not modelled 7.2 18
PDB header:transferase
Chain: B: PDB Molecule:beta-1,4-galactosyltransferase 7;
PDBTitle: crystal structure of catalytic domain of human beta1,2 4galactosyltransferase 7 in closed conformation in complex with3 manganese and udp
72d2giba1



not modelled 7.2 50
Fold:Nucleocapsid protein dimerization domain
Superfamily:Nucleocapsid protein dimerization domain
Family:Coronavirus nucleocapsid protein
73c5v76A_



not modelled 7.1 21
PDB header:structural protein
Chain: A: PDB Molecule:microcompartments protein;
PDBTitle: structure of haliangium ochraceum bmc-t ho-3341
74c2vxdA_



not modelled 7.1 71
PDB header:nuclear protein
Chain: A: PDB Molecule:nucleophosmin;
PDBTitle: the structure of the c-terminal domain of nucleophosmin
75c6em5w_



not modelled 7.1 20
PDB header:ribosome
Chain: W: PDB Molecule:ribosome assembly factor mrt4;
PDBTitle: state d architectural model (nsa1-tap flag-ytm1) - visualizing the2 assembly pathway of nucleolar pre-60s ribosomes
76c3f56F_



not modelled 7.0 25
PDB header:structural protein
Chain: F: PDB Molecule:csos1d;
PDBTitle: the structure of a previously undetected carboxysome shell protein:2 csos1d from prochlorococcus marinus med4
77d1h4ra3



not modelled 7.0 33
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:First domain of FERM
78c3k1lA_



not modelled 6.9 23
PDB header:ligase
Chain: A: PDB Molecule:fancl;
PDBTitle: crystal structure of fancl
79d2k0bx1



not modelled 6.8 33
Fold:RuvA C-terminal domain-like
Superfamily:UBA-like
Family:UBA domain
80c3bbnB_



not modelled 6.6 24
PDB header:ribosome
Chain: B: PDB Molecule:ribosomal protein s2;
PDBTitle: homology model for the spinach chloroplast 30s subunit fitted to 9.4a2 cryo-em map of the 70s chlororibosome.
81c4ineB_



not modelled 6.6 18
PDB header:transferase
Chain: B: PDB Molecule:protein pmt-2;
PDBTitle: crystal structure of n-methyl transferase (pmt-2) from caenorhabditis2 elegant complexed with s-adenosyl homocysteine and3 phosphoethanolamine
82c5epwB_



not modelled 6.6 25
PDB header:viral protein
Chain: B: PDB Molecule:nucleoprotein;
PDBTitle: c-terminal domain of human coronavirus nl63 nucleocapsid protein
83c3j6vB_



not modelled 6.6 10
PDB header:ribosome
Chain: B: PDB Molecule:28s ribosomal protein s2, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
84c5o5jV_



not modelled 6.6 28
PDB header:ribosome
Chain: V: PDB Molecule:30s ribosomal protein s2;
PDBTitle: structure of the 30s small ribosomal subunit from mycobacterium2 smegmatis
85d1pzta_



not modelled 6.3 22
Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:beta 1,4 galactosyltransferase (b4GalT1)
86c3dh0B_



not modelled 6.3 13
PDB header:transferase
Chain: B: PDB Molecule:sam dependent methyltransferase;
PDBTitle: crystal structure of a sam dependent methyltransferase from2 aquifex aeolicus
87c1zgaA_



not modelled 6.2 21
PDB header:plant protein, transferase
Chain: A: PDB Molecule:isoflavanone 4'-o-methyltransferase';
PDBTitle: crystal structure of isoflavanone 4'-o-methyltransferase complexed2 with (+)-6a-hydroxymaackiain
88c3noyA_



not modelled 6.2 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;
PDBTitle: crystal structure of ispg (gcpe)
89c2llhA_



not modelled 6.2 71
PDB header:dna binding protein, chaperone
Chain: A: PDB Molecule:nucleophosmin;
PDBTitle: nmr structure of npm1_c70
90c3vjfA_



not modelled 6.2 18
PDB header:de novo protein
Chain: A: PDB Molecule:wa20;
PDBTitle: crystal structure of de novo 4-helix bundle protein wa20
91d1yuba_



not modelled 6.2 9
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:rRNA adenine dimethylase-like
92d1fx0a1



not modelled 6.1 13
Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
93c2v6yA_



not modelled 6.1 22
PDB header:hydrolase
Chain: A: PDB Molecule:aaa family atpase, p60 katanin;
PDBTitle: structure of the mit domain from a s. solfataricus vps4-2 like atpase
94c4ht7G_



not modelled 6.0 25
PDB header:protein binding
Chain: G: PDB Molecule:co2 concentrating mechanism protein p;
PDBTitle: co2 concentrating mechanism protein p, ccmp form 2
95c3egbA_



not modelled 6.0 50
PDB header:protein binding
Chain: A: PDB Molecule:protein pellino homolog 2;
PDBTitle: structure of pellino2 fha domain at 3.3 angstroms resolution.
96d2dk8a1



not modelled 5.8 29
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RPO3F domain-like
97d1lj8a4



not modelled 5.7 30
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
98c5l39D_



not modelled 5.7 25
PDB header:structural protein
Chain: D: PDB Molecule:rmm microcompartment shell protein msm0275;
PDBTitle: the structure of the fused permuted hexameric shell protein msm02752 from the rmm microcompartment
99c6n2oB_



not modelled 5.6 21
PDB header:oxidoreductase
Chain: B: PDB Molecule:pyruvate ferredoxin/flavodoxin oxidoreductase, beta
PDBTitle: 2-oxoglutarate:ferredoxin oxidoreductase from magnetococcus marinus2 with 2-oxoglutarate, coenzyme a and succinyl-coa bound

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