Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3531c_(-)_3967996_3969123
DateFri Aug 9 18:20:21 BST 2019
Unique Job ID8be996c891aefc3b
SequenceVYSDPLREAI ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:43.758 Y:69.660 Z:57.255
Model (left) based on template c6ansD_
Top template information
PDB header:unknown function
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 burkholderia cenocepacia
Confidence and coverage
Confidence:100.0% Coverage: 89%
332 residues ( 89% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ansD_
100.0 27
PDB header:unknown function
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 burkholderia cenocepacia
2c3u07A_
98.3 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein vpa0106;
PDBTitle: crystal structure of the vpa0106 protein from vibrio parahaemolyticus.2 northeast structural genomics consortium target vpr106.
3d2p3ya1
97.6 16
Fold:VPA0735-like
Superfamily:VPA0735-like
Family:VPA0735-like
4c2p3yA_
97.6 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein vpa0735;
PDBTitle: crystal structure of vpa0735 from vibrio parahaemolyticus. northeast2 structural genomics target vpr109
5c4tq2A_
70.9 10
PDB header:lyase
Chain: A: PDB Molecule:putative phycoerythrin lyase;
PDBTitle: structure of s-type phycobiliprotein lyase cpes from guillardia theta
6c3bdrA_
52.1 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ycf58 protein;
PDBTitle: crystal structure of fatty acid-binding protein-like ycf58 from2 thermosynecoccus elongatus. northeast structural genomics consortium3 target ter13.
7c3h3iA_
49.4 30
PDB header:lipid binding protein
Chain: A: PDB Molecule:putative lipid binding protein;
PDBTitle: crystal structure of a putative lipid binding protein (bt_2261) from2 bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution
8c1n10A_
44.1 14
PDB header:allergen
Chain: A: PDB Molecule:pollen allergen phl p 1;
PDBTitle: crystal structure of phl p 1, a major timothy grass pollen allergen
9d1rp1a1
38.7 14
Fold:Lipase/lipooxygenase domain (PLAT/LH2 domain)
Superfamily:Lipase/lipooxygenase domain (PLAT/LH2 domain)
Family:Colipase-binding domain
10d2proc1
31.8 29
Fold:Alpha-lytic protease prodomain-like
Superfamily:Alpha-lytic protease prodomain
Family:Alpha-lytic protease prodomain
11c3j38V_
30.3 14
PDB header:ribosome
Chain: V: PDB Molecule:40s ribosomal protein s21;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
12c3iswA_
28.7 13
PDB header:structural protein
Chain: A: PDB Molecule:filamin-a;
PDBTitle: crystal structure of filamin-a immunoglobulin-like repeat 21 bound to2 an n-terminal peptide of cftr
13c4dy5A_
26.8 14
PDB header:hydrolase inhibitor
Chain: A: PDB Molecule:gifsy-1 prophage protein;
PDBTitle: crystal structure of salmonella typhimurium plig, a periplasmic2 lysozyme inhibitor of g-type lysozyme
14c5xtdo_
26.5 21
PDB header:oxidoreductase/electron transport
Chain: O: PDB Molecule:nadh dehydrogenase [ubiquinone] flavoprotein 2,
PDBTitle: cryo-em structure of human respiratory complex i
15c4pbdA_
24.7 19
PDB header:protein binding
Chain: A: PDB Molecule:protein shq1 homolog;
PDBTitle: crystal structure of the n-terminal cs domain of human shq1
16d1ddwa_
23.7 7
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Enabled/VASP homology 1 domain (EVH1 domain)
17c2glwA_
22.7 19
PDB header:transcription
Chain: A: PDB Molecule:92aa long hypothetical protein;
PDBTitle: the solution structure of phs018 from pyrococcus horikoshii
18d2nysa1
22.3 17
Fold:SspB-like
Superfamily:SspB-like
Family:AGR C 3712p-like
19c2nysA_
22.3 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:agr_c_3712p;
PDBTitle: x-ray crystal structure of protein agr_c_3712 from agrobacterium2 tumefaciens. northeast structural genomics consortium target atr88.
20c2qasA_
21.4 13
PDB header:hydrolase activator
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of caulobacter crescentus sspb ortholog
21d2q1ma1
not modelled 19.9 23
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
22c5jsdB_
not modelled 19.6 12
PDB header:viral protein
Chain: B: PDB Molecule:phiab6 tailspike;
PDBTitle: crystal structure of phiab6 tailspike in complex with five-repeated2 oligosaccharides of acinetobacter baumannii surface polysaccharide
23d1r0ah1
not modelled 19.2 16
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
24d1xu1a_
not modelled 19.1 31
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
25c4nreA_
not modelled 19.0 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:arachidonate 15-lipoxygenase b;
PDBTitle: the structure of human 15-lipoxygenase-2 with a substrate mimic
26c5npxS_
not modelled 18.9 18
PDB header:virus
Chain: S: PDB Molecule:polyprotein;
PDBTitle: atomic structure of the broad bean stain virus (bbsv) by cryo-em
27d1mvfa_
not modelled 18.9 11
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
28d2fhzb1
not modelled 18.8 19
Fold:Colicin D/E5 nuclease domain
Superfamily:Colicin D/E5 nuclease domain
Family:Colicin E5 nuclease domain
29c3o8yA_
not modelled 18.6 30
PDB header:oxidoreductase
Chain: A: PDB Molecule:arachidonate 5-lipoxygenase;
PDBTitle: stable-5-lipoxygenase
30c4k3eI_
not modelled 18.3 20
PDB header:immune system
Chain: I: PDB Molecule:bovine antibody with ultralong cdr h3, heavy chain;
PDBTitle: crystal structure of bovine antibody blv5b8 with ultralong cdr h3
31c2ds4A_
not modelled 18.0 21
PDB header:protein binding
Chain: A: PDB Molecule:tripartite motif protein 45;
PDBTitle: solution structure of the filamin domain from human2 tripartite motif protein 45
32c5yvuA_
not modelled 17.9 42
PDB header:viral protein
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: crystal structures of unlinked full length ns3 from dengue virus2 provide insights into dynamics of protease domain
33c5nwmA_
not modelled 17.4 24
PDB header:signaling protein
Chain: A: PDB Molecule:nuclear receptor coactivator 1;
PDBTitle: insight into the molecular recognition mechanism of the coactivator2 ncoa1 by stat6
34c4g4fA_
not modelled 17.1 25
PDB header:immune system
Chain: A: PDB Molecule:tumor necrosis factor ligand superfamily member 18;
PDBTitle: crystal structure of gitrl from bushbaby
35c1rj8B_
not modelled 16.8 21
PDB header:hormone/growth factor
Chain: B: PDB Molecule:ectodysplasin-a isoform eda-a2;
PDBTitle: the crystal structure of tnf family member eda-a2
36d1rj8a_
not modelled 16.8 21
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
37d1dg6a_
not modelled 16.6 24
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
38c1dg6A_
not modelled 16.6 24
PDB header:apoptosis
Chain: A: PDB Molecule:apo2l/tnf-related apopotis inducing ligand (trail);
PDBTitle: crystal structure of apo2l/trail
39d1qfha1
not modelled 16.5 8
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
40c4chmB_
not modelled 16.4 31
PDB header:cell cycle
Chain: B: PDB Molecule:imc sub-compartment protein isp1;
PDBTitle: structure of inner membrane complex (imc) sub-compartment protein 12 (isp1) from toxoplasma gondii
41c2hczX_
not modelled 15.8 9
PDB header:allergen
Chain: X: PDB Molecule:beta-expansin 1a;
PDBTitle: crystal structure of expb1 (zea m 1), a beta-expansin and group-12 pollen allergen from maize
42d2bp3a1
not modelled 15.5 23
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)
43d1unaa_
not modelled 15.3 18
Fold:RNA bacteriophage capsid protein
Superfamily:RNA bacteriophage capsid protein
Family:RNA bacteriophage capsid protein
44c5gkkA_
not modelled 15.1 13
PDB header:hydrolase
Chain: A: PDB Molecule:putative homing endonuclease;
PDBTitle: crystal structure of a homing endonuclease, i-tnai
45d1pgl11
not modelled 15.0 16
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Comoviridae-like VP
46d1af5a_
not modelled 14.9 27
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Group I mobile intron endonuclease
47c1osgC_
not modelled 14.7 31
PDB header:immune system
Chain: C: PDB Molecule:tumor necrosis factor ligand superfamily member
PDBTitle: complex between baff and a br3 derived peptide presented in2 a beta-hairpin scaffold
48d1kxga_
not modelled 14.7 31
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
49c2h1xB_
not modelled 14.6 14
PDB header:hydrolase
Chain: B: PDB Molecule:5-hydroxyisourate hydrolase (formerly known as
PDBTitle: crystal structure of 5-hydroxyisourate hydrolase (formerly2 known as trp, transthyretin related protein)
50d1s55a1
not modelled 14.2 38
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
51d2q8oa1
not modelled 14.1 23
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
52c2bsdC_
not modelled 14.0 19
PDB header:receptor
Chain: C: PDB Molecule:receptor binding protein;
PDBTitle: structure of lactococcal bacteriophage p2 receptor binding protein
53c3zeyR_
not modelled 14.0 21
PDB header:ribosome
Chain: R: PDB Molecule:40s ribosomal protein s21, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
54c2ee6A_
not modelled 13.9 14
PDB header:structural protein
Chain: A: PDB Molecule:filamin-b;
PDBTitle: solution structure of the 21th filamin domain from human2 filamin-b
55c1pyuD_
not modelled 13.5 30
PDB header:lyase
Chain: D: PDB Molecule:aspartate 1-decarboxylase alfa chain;
PDBTitle: processed aspartate decarboxylase mutant with ser25 mutated to cys
56c3eudE_
not modelled 13.4 21
PDB header:nuclear protein
Chain: E: PDB Molecule:protein shq1;
PDBTitle: structure of the cs domain of the essential h/aca rnp assembly protein2 shq1p
57c2npbA_
not modelled 13.3 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:selenoprotein w;
PDBTitle: nmr solution structure of mouse selw
58c3i2dA_
not modelled 13.2 29
PDB header:ligase
Chain: A: PDB Molecule:e3 sumo-protein ligase siz1;
PDBTitle: crystal structure of s. cerevisiae sumo e3 ligase siz1
59c5f4zB_
not modelled 13.2 16
PDB header:hydrolase
Chain: B: PDB Molecule:epoxide hydrolase;
PDBTitle: the crystal structure of an epoxide hydrolase from streptomyces2 carzinostaticus subsp. neocarzinostaticus
60d1pxva_
not modelled 13.1 17
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:Papain-like
61c4chjA_
not modelled 12.9 38
PDB header:cell cycle
Chain: A: PDB Molecule:imc sub-compartment protein isp3;
PDBTitle: structure of inner membrane complex (imc) sub-compartment2 protein 3 (isp3) from toxoplasma gondii
62d1t9ia_
not modelled 12.9 20
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Group I mobile intron endonuclease
63d1m5xa_
not modelled 12.9 33
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Group I mobile intron endonuclease
64c5a72B_
not modelled 12.8 20
PDB header:hydrolase/dna
Chain: B: PDB Molecule:dna endonuclease i-cvui;
PDBTitle: crystal structure of the homing endonuclease i-cvui in complex2 with its target (sro1.3) in the presence of 2 mm ca
65c3oq0D_
not modelled 12.7 25
PDB header:cell cycle
Chain: D: PDB Molecule:dbf4;
PDBTitle: crystal structure of motif n of saccharomyces cerevisiae dbf4
66c3b8eB_
not modelled 12.5 22
PDB header:hydrolase/transport protein
Chain: B: PDB Molecule:sodium/potassium-transporting atpase subunit
PDBTitle: crystal structure of the sodium-potassium pump
67c3rghA_
not modelled 12.4 23
PDB header:cell adhesion
Chain: A: PDB Molecule:filamin-a;
PDBTitle: structure of filamin a immunoglobulin-like repeat 10 from homo sapiens
68c4ht1T_
not modelled 12.4 30
PDB header:immune system
Chain: T: PDB Molecule:tumor necrosis factor ligand superfamily member 12;
PDBTitle: human tweak in complex with the fab fragment of a neutralizing2 antibody
69c4i19A_
not modelled 12.3 19
PDB header:hydrolase
Chain: A: PDB Molecule:epoxide hydrolase;
PDBTitle: the crystal structure of an epoxide hydrolase from streptomyces2 carzinostaticus subsp. neocarzinostaticus.
70c4o7jB_
not modelled 12.2 31
PDB header:antibiotic resistance
Chain: B: PDB Molecule:carg;
PDBTitle: crystal structure of carg
71c4m4xA_
not modelled 12.2 22
PDB header:transcription
Chain: A: PDB Molecule:aryl hydrocarbon receptor;
PDBTitle: structure and dimerization properties of the aryl hydrocarbon receptor2 (ahr) pas-a domain
72c1vc3B_
not modelled 12.0 40
PDB header:lyase
Chain: B: PDB Molecule:l-aspartate-alpha-decarboxylase heavy chain;
PDBTitle: crystal structure of l-aspartate-alpha-decarboxylase
73d2zgwa1
not modelled 12.0 43
Fold:SH3-like barrel
Superfamily:C-terminal domain of transcriptional repressors
Family:Biotin repressor (BirA)
74d1bu8a1
not modelled 11.9 14
Fold:Lipase/lipooxygenase domain (PLAT/LH2 domain)
Superfamily:Lipase/lipooxygenase domain (PLAT/LH2 domain)
Family:Colipase-binding domain
75c4msvA_
not modelled 11.9 21
PDB header:immune system
Chain: A: PDB Molecule:tumor necrosis factor ligand superfamily member 6;
PDBTitle: crystal structure of fasl and dcr3 complex
76d1mowa1
not modelled 11.7 27
Fold:Homing endonuclease-like
Superfamily:Homing endonucleases
Family:Group I mobile intron endonuclease
77d1rbli_
not modelled 11.7 13
Fold:RuBisCO, small subunit
Superfamily:RuBisCO, small subunit
Family:RuBisCO, small subunit
78c2brqB_
not modelled 11.6 11
PDB header:structural protein
Chain: B: PDB Molecule:filamin a;
PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta7 cytoplasmic tail peptide
79c5d55A_
not modelled 11.6 19
PDB header:cell adhesion
Chain: A: PDB Molecule:hdab,hdaa (adhesin), hus-associated diffuse adherence;
PDBTitle: crystal structure of the e. coli hda pilus minor tip subunit, hdab
80d1tnra_
not modelled 11.5 21
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
81d1kdga2
not modelled 11.5 18
Fold:FAD-linked reductases, C-terminal domain
Superfamily:FAD-linked reductases, C-terminal domain
Family:GMC oxidoreductases
82d1aoya_
not modelled 11.5 10
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:Arginine repressor (ArgR), N-terminal DNA-binding domain
83c3u1iA_
not modelled 11.4 36
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:serine protease subunit ns2b;
PDBTitle: dengue virus protease covalently bound to a peptide
84d1npia_
not modelled 10.8 50
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Long-chain scorpion toxins
85c3e54A_
not modelled 10.7 33
PDB header:hydrolase/dna
Chain: A: PDB Molecule:rrna intron-encoded endonuclease;
PDBTitle: archaeal intron-encoded homing endonuclease i-vdi141i complexed with2 dna
86d2f1da2
not modelled 10.7 36
Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:Imidazole glycerol phosphate dehydratase
87c5xyiV_
not modelled 10.4 15
PDB header:ribosome
Chain: V: PDB Molecule:40s ribosomal protein s21;
PDBTitle: small subunit of trichomonas vaginalis ribosome
88c6d7yA_
not modelled 10.3 8
PDB header:toxin
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: 1.75 angstrom resolution crystal structure of the toxic c-terminal tip2 of cdia from pseudomonas aeruginosa in complex with immune protein
89c4wmaA_
not modelled 10.2 33
PDB header:transferase/protein binding
Chain: A: PDB Molecule:xyloside xylosyltransferase 1;
PDBTitle: crystal structure of mouse xyloside xylosyltransferase 1 complexed2 with manganese,acceptor ligand and udp-glucose
90c3d00A_
not modelled 10.2 21
PDB header:metal binding protein
Chain: A: PDB Molecule:tungsten formylmethanofuran dehydrogenase subunit e;
PDBTitle: crystal structure of a tungsten formylmethanofuran dehydrogenase2 subunit e (fmde)-like protein (syn_00638) from syntrophus3 aciditrophicus at 1.90 a resolution
91d1mexh1
not modelled 10.2 5
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
92c5j57B_
not modelled 10.0 14
PDB header:hydrolase/immune system
Chain: B: PDB Molecule:vhh single chain antibody v5e1;
PDBTitle: v5e1-rta complex
93c2obkE_
not modelled 10.0 19
PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:selt/selw/selh selenoprotein domain;
PDBTitle: x-ray structure of the putative se binding protein from pseudomonas2 fluorescens. northeast structural genomics consortium target plr6.
94d2pf5a1
not modelled 9.9 16
Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:Link domain
95c1skoA_
not modelled 9.9 40
PDB header:signaling protein
Chain: A: PDB Molecule:mitogen-activated protein kinase kinase 1
PDBTitle: mp1-p14 complex
96c2lw3A_
not modelled 9.6 38
PDB header:membrane protein
Chain: A: PDB Molecule:putative membrane protein mmps4;
PDBTitle: solution structure of the soluble domain of mmps4 from mycobacterium2 tuberculosis
97c2p0mB_
not modelled 9.5 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:arachidonate 15-lipoxygenase;
PDBTitle: revised structure of rabbit reticulocyte 15s-lipoxygenase
98c2rnqA_
not modelled 9.4 24
PDB header:transcription
Chain: A: PDB Molecule:transcription initiation factor iie subunit
PDBTitle: solution structure of the c-terminal acidic domain of tfiie2 alpha
99d1v05a_
not modelled 9.4 12
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Filamin repeat (rod domain)

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