Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3532_(PPE61)_3969522_3970742
DateFri Aug 9 18:20:21 BST 2019
Unique Job ID6499fcd1aaf6a5a5
SequenceMFMDFAMLPP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:60.074 Y:72.050 Z:76.418
Model (left) based on template c5xfsB_
Top template information
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 43%
173 residues ( 43% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 58% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xfsB_
100.0 54
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
2c2g38B_
100.0 33
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ppe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
3d2g38b1
100.0 33
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PPE
4c4xy3A_
100.0 18
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion-associated protein espb;
PDBTitle: structure of esx-1 secreted protein espb
5c4wj2A_
98.8 16
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
6c2vs0B_
97.7 11
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
7c4iogD_
97.5 19
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
8c3gvmA_
97.5 16
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
9c3zbhC_
97.4 18
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
10d1wa8a1
96.6 25
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
11c4lwsB_
95.7 12
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
12d1wa8b1
95.0 17
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
13c4lwsA_
94.9 14
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
14c4i0xA_
93.8 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein mab_3112;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
15c2kg7B_
89.4 13
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
16c4i0xJ_
82.2 18
PDB header:structural genomics, unknown function
Chain: J: PDB Molecule:esat-6-like protein mab_3113;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
17d1ui5a2
22.4 20
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
18c1bkvA_
13.4 38
PDB header:structural protein
Chain: A: PDB Molecule:t3-785;
PDBTitle: collagen
19c2knuA_
13.4 40
PDB header:membrane protein
Chain: A: PDB Molecule:genome polyprotein;
PDBTitle: solution structure of the transmembrane proximal region of2 the hepatis c virus e1 glycoprotein
20c5frgA_
13.1 75
PDB header:protein binding
Chain: A: PDB Molecule:formin-binding protein 1-like;
PDBTitle: the nmr structure of the cdc42-interacting region of toca1
21c1bkvC_
not modelled 12.8 38
PDB header:structural protein
Chain: C: PDB Molecule:t3-785;
PDBTitle: collagen
22c1bkvB_
not modelled 12.8 38
PDB header:structural protein
Chain: B: PDB Molecule:t3-785;
PDBTitle: collagen
23d1zeea1
not modelled 11.8 29
Fold:Indolic compounds 2,3-dioxygenase-like
Superfamily:Indolic compounds 2,3-dioxygenase-like
Family:Indoleamine 2,3-dioxygenase-like
24c2iu1A_
not modelled 9.3 17
PDB header:transcription
Chain: A: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: crystal structure of eif5 c-terminal domain
25c2fulE_
not modelled 8.6 33
PDB header:translation
Chain: E: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: crystal structure of the c-terminal domain of s. cerevisiae eif5
26c2nvjA_
not modelled 8.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:25mer peptide from vacuolar atp synthase subunit
PDBTitle: nmr structures of transmembrane segment from subunit a from2 the yeast proton v-atpase
27c4lzxB_
not modelled 7.6 41
PDB header:metal binding protein
Chain: B: PDB Molecule:iq domain-containing protein g;
PDBTitle: complex of iqcg and ca2+-free cam
28c2ke4A_
not modelled 7.0 75
PDB header:membrane protein
Chain: A: PDB Molecule:cdc42-interacting protein 4;
PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4
29d1fcda3
not modelled 6.8 38
Fold:CO dehydrogenase flavoprotein C-domain-like
Superfamily:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
Family:FAD/NAD-linked reductases, dimerisation (C-terminal) domain
30c4m1lB_
not modelled 6.8 50
PDB header:metal binding protein
Chain: B: PDB Molecule:iq domain-containing protein g;
PDBTitle: complex of iqcg and ca2+-bound cam
31c5kj3A_
not modelled 6.6 50
PDB header:transport protein
Chain: A: PDB Molecule:gap junction beta-2 protein;
PDBTitle: connexin 26 wt peptide nmr structure
32c4i6jB_
not modelled 6.4 22
PDB header:transcription
Chain: B: PDB Molecule:f-box/lrr-repeat protein 3;
PDBTitle: a ubiquitin ligase-substrate complex
33c2lkqA_
not modelled 6.2 44
PDB header:immune system
Chain: A: PDB Molecule:immunoglobulin lambda-like polypeptide 1;
PDBTitle: nmr structure of the lambda 5 22-45 peptide
34c3juiA_
not modelled 6.1 15
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b subunit epsilon;
PDBTitle: crystal structure of the c-terminal domain of human translation2 initiation factor eif2b epsilon subunit
35c1vytF_
not modelled 5.8 38
PDB header:transport protein
Chain: F: PDB Molecule:voltage-dependent l-type calcium channel
PDBTitle: beta3 subunit complexed with aid
36c6nbiP_
not modelled 5.7 80
PDB header:signaling protein
Chain: P: PDB Molecule:long-acting parathyroid hormone analog;
PDBTitle: cryo-em structure of parathyroid hormone receptor type 1 in complex2 with a long-acting parathyroid hormone analog and g protein
37c6q5lA_
not modelled 5.6 23
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hex*-l24h;
PDBTitle: crystal structure of a cc-hex mutant that forms an antiparallel four-2 helix coiled coil cc-hex*-l24h
38c6q5lB_
not modelled 5.6 23
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hex*-l24h;
PDBTitle: crystal structure of a cc-hex mutant that forms an antiparallel four-2 helix coiled coil cc-hex*-l24h
39c6q5hA_
not modelled 5.6 23
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hex*-l24d;
PDBTitle: crystal structure of a cc-hex mutant that forms an antiparallel four-2 helix coiled coil cc-hex*-l24d
40c6q5iB_
not modelled 5.5 23
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hex*-l24e;
PDBTitle: crystal structure of a cc-hex mutant that forms an antiparallel four-2 helix coiled coil cc-hex*-l24e
41c6q5mB_
not modelled 5.5 23
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hex*-l24dab;
PDBTitle: crystal structure of a cc-hex mutant that forms an antiparallel four-2 helix coiled coil cc-hex*-l24dab
42c6q5kA_
not modelled 5.5 23
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hex*-l24k;
PDBTitle: crystal structure of a cc-hex mutant that forms an antiparallel four-2 helix coiled coil cc-hex*-l24k
43c1paqA_
not modelled 5.5 24
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b epsilon
PDBTitle: crystal structure of the catalytic fragment of eukaryotic2 initiation factor 2b epsilon
44d1paqa_
not modelled 5.5 24
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:MIF4G domain-like
45d1vlfn1
not modelled 5.5 100
Fold:Prealbumin-like
Superfamily:Cna protein B-type domain
Family:Cna protein B-type domain
46c6q5mA_
not modelled 5.5 23
PDB header:de novo protein
Chain: A: PDB Molecule:cc-hex*-l24dab;
PDBTitle: crystal structure of a cc-hex mutant that forms an antiparallel four-2 helix coiled coil cc-hex*-l24dab
47c3sjrB_
not modelled 5.4 19
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of conserved unkown function protein cv_1783 from2 chromobacterium violaceum atcc 12472
48c1bzgA_
not modelled 5.4 0
PDB header:hormone
Chain: A: PDB Molecule:parathyroid hormone-related protein;
PDBTitle: the solution structure of human parathyroid hormone-related2 protein (1-34) in near-physiological solution, nmr, 303 structures
49c6aokA_
not modelled 5.4 50
PDB header:hydrolase
Chain: A: PDB Molecule:ceg4;
PDBTitle: crystal structure of legionella pneumophila effector ceg4 with n-2 terminal tev protease cleavage sequence
50c2jtwA_
not modelled 5.3 25
PDB header:membrane protein
Chain: A: PDB Molecule:transmembrane helix 7 of yeast vatpase;
PDBTitle: solution structure of tm7 bound to dpc micelles
51c3r47B_
not modelled 5.3 23
PDB header:de novo protein
Chain: B: PDB Molecule:coiled coil helix l24h;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24
52c3r47J_
not modelled 5.3 23
PDB header:de novo protein
Chain: J: PDB Molecule:coiled coil helix l24h;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24
53c3r47I_
not modelled 5.3 23
PDB header:de novo protein
Chain: I: PDB Molecule:coiled coil helix l24h;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24
54c6q5jE_
not modelled 5.3 23
PDB header:de novo protein
Chain: E: PDB Molecule:cc-hex*-l24e;
PDBTitle: crystal structure of a cc-hex mutant that forms a parallel six-helix2 coiled coil cc-hex*-l24e
55c6q5kB_
not modelled 5.2 23
PDB header:de novo protein
Chain: B: PDB Molecule:cc-hex*-l24k;
PDBTitle: crystal structure of a cc-hex mutant that forms an antiparallel four-2 helix coiled coil cc-hex*-l24k
56c6q5jF_
not modelled 5.2 23
PDB header:de novo protein
Chain: F: PDB Molecule:cc-hex*-l24e;
PDBTitle: crystal structure of a cc-hex mutant that forms a parallel six-helix2 coiled coil cc-hex*-l24e
57c6cgjA_
not modelled 5.2 38
PDB header:hydrolase
Chain: A: PDB Molecule:effector protein lem4 (lpg1101);
PDBTitle: structure of the had domain of effector protein lem4 (lpg1101) from2 legionella pneumophila
58c5i4rA_
not modelled 5.2 57
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:contact-dependent inhibitor a;
PDBTitle: contact-dependent inhibition system from escherichia coli nc101 -2 ternary cdia/cdii/ef-tu complex (trypsin-modified)
59c3r47L_
not modelled 5.1 23
PDB header:de novo protein
Chain: L: PDB Molecule:coiled coil helix l24h;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24
60c3r47F_
not modelled 5.1 23
PDB header:de novo protein
Chain: F: PDB Molecule:coiled coil helix l24h;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24
61c3r47C_
not modelled 5.1 23
PDB header:de novo protein
Chain: C: PDB Molecule:coiled coil helix l24h;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24
62c3r47M_
not modelled 5.1 23
PDB header:de novo protein
Chain: M: PDB Molecule:coiled coil helix l24h;
PDBTitle: crystal structure of a 6-helix coiled coil cc-hex-h24

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below