Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3536c_(-)_3974690_3975475
DateFri Aug 9 18:20:21 BST 2019
Unique Job ID0fd8ee3a70968cfd
SequenceMLRDATRDEL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:45.493 Y:50.023 Z:44.829
Model (left) based on template c5d2hA_
Top template information
PDB header:lyase
Chain: A: PDB Molecule:4-oxalocrotonate decarboxylase nahk;
PDBTitle: 4-oxalocrotonate decarboxylase from pseudomonas putida g7 - complexed2 with magnesium and alpha-ketoglutarate
Confidence and coverage
Confidence:100.0% Coverage: 99%
259 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5d2hA_



100.0 34
PDB header:lyase
Chain: A: PDB Molecule:4-oxalocrotonate decarboxylase nahk;
PDBTitle: 4-oxalocrotonate decarboxylase from pseudomonas putida g7 - complexed2 with magnesium and alpha-ketoglutarate
2d1sv6a_



100.0 42
Fold:FAH
Superfamily:FAH
Family:FAH
3c2eb5D_



100.0 43
PDB header:lyase
Chain: D: PDB Molecule:2-oxo-hept-3-ene-1,7-dioate hydratase;
PDBTitle: crystal structure of hpcg complexed with oxalate
4c3l53F_



100.0 16
PDB header:structural genomics, unknown function
Chain: F: PDB Molecule:putative fumarylacetoacetate isomerase/hydrolase;
PDBTitle: crystal structure of a putative fumarylacetoacetate2 isomerase/hydrolase from oleispira antarctica
5d1sawa_



100.0 19
Fold:FAH
Superfamily:FAH
Family:FAH
6c3qdfA_



100.0 17
PDB header:isomerase
Chain: A: PDB Molecule:2-hydroxyhepta-2,4-diene-1,7-dioate isomerase;
PDBTitle: crystal structure of 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase2 from mycobacterium marinum
7c3s52A_



100.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:putative fumarylacetoacetate hydrolase family protein;
PDBTitle: crystal structure of a putative fumarylacetoacetate hydrolase family2 protein from yersinia pestis co92
8c4maqB_



100.0 17
PDB header:hydrolase
Chain: B: PDB Molecule:putative fumarylpyruvate hydrolase;
PDBTitle: crystal structure of a putative fumarylpyruvate hydrolase from2 burkholderia cenocepacia
9d1nr9a_



100.0 21
Fold:FAH
Superfamily:FAH
Family:FAH
10d1gtta1



100.0 15
Fold:FAH
Superfamily:FAH
Family:FAH
11c1wzoC_



100.0 20
PDB header:isomerase
Chain: C: PDB Molecule:hpce;
PDBTitle: crystal structure of the hpce from thermus thermophilus hb8
12d1gtta2



100.0 15
Fold:FAH
Superfamily:FAH
Family:FAH
13c6iymB_



100.0 19
PDB header:hydrolase
Chain: B: PDB Molecule:5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase;
PDBTitle: fumarylacetoacetate hydrolase (eafah) from psychrophilic2 exiguobacterium antarcticum
14c1i7oC_



100.0 15
PDB header:isomerase, lyase
Chain: C: PDB Molecule:4-hydroxyphenylacetate degradation bifunctional
PDBTitle: crystal structure of hpce
15c2dfuB_



100.0 17
PDB header:isomerase
Chain: B: PDB Molecule:probable 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase;
PDBTitle: crystal structure of the 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase2 from thermus thermophilus hb8
16c3r6oA_



100.0 20
PDB header:isomerase
Chain: A: PDB Molecule:2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase;
PDBTitle: crystal structure of a probable 2-hydroxyhepta-2,4-diene-1, 7-2 dioateisomerase from mycobacterium abscessus
17c6jvwA_



100.0 15
PDB header:hydrolase
Chain: A: PDB Molecule:maleylpyruvate hydrolase;
PDBTitle: crystal structure of maleylpyruvate hydrolase from sphingobium sp.2 syk-6 in complex with manganese (ii) ion and pyruvate
18c4dbhA_



100.0 13
PDB header:isomerase
Chain: A: PDB Molecule:2-hydroxyhepta-2,4-diene-1,7-dioate isomerase;
PDBTitle: crystal structure of cg1458 with inhibitor
19d1nkqa_



100.0 16
Fold:FAH
Superfamily:FAH
Family:FAH
20c3lzkC_



100.0 16
PDB header:hydrolase
Chain: C: PDB Molecule:fumarylacetoacetate hydrolase family protein;
PDBTitle: the crystal structure of a probably aromatic amino acid2 degradation protein from sinorhizobium meliloti 1021
21c2q1dX_



not modelled 99.9 13
PDB header:lyase
Chain: X: PDB Molecule:2-keto-3-deoxy-d-arabinonate dehydratase;
PDBTitle: 2-keto-3-deoxy-d-arabinonate dehydratase complexed with magnesium and2 2,5-dioxopentanoate
22d1hyoa2



not modelled 99.9 18
Fold:FAH
Superfamily:FAH
Family:FAH
23c4qkuC_



not modelled 99.9 23
PDB header:hydrolase
Chain: C: PDB Molecule:hydrolase;
PDBTitle: crystal structure of a putative hydrolase from burkholderia2 cenocepacia
24c1hyoB_



not modelled 99.9 18
PDB header:hydrolase
Chain: B: PDB Molecule:fumarylacetoacetate hydrolase;
PDBTitle: crystal structure of fumarylacetoacetate hydrolase2 complexed with 4-(hydroxymethylphosphinoyl)-3-oxo-butanoic3 acid
25d1t8sa_



not modelled 65.7 20
Fold:Phosphorylase/hydrolase-like
Superfamily:Purine and uridine phosphorylases
Family:Purine and uridine phosphorylases
26d1ybfa_



not modelled 42.9 16
Fold:Phosphorylase/hydrolase-like
Superfamily:Purine and uridine phosphorylases
Family:Purine and uridine phosphorylases
27c3teeA_



not modelled 38.7 20
PDB header:chaperone
Chain: A: PDB Molecule:flagella basal body p-ring formation protein flga;
PDBTitle: crystal structure of salmonella flga in open form
28c3frnA_



not modelled 29.7 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:flagellar protein flga;
PDBTitle: crystal structure of flagellar protein flga from thermotoga maritima2 msb8
29c4kmaA_



not modelled 28.9 20
PDB header:protein binding
Chain: A: PDB Molecule:gm14141p;
PDBTitle: crystal structure of drosophila suppressor of fused
30d1m1la_



not modelled 25.8 30
Fold:Suppressor of Fused, N-terminal domain
Superfamily:Suppressor of Fused, N-terminal domain
Family:Suppressor of Fused, N-terminal domain
31c3mb8A_



not modelled 24.9 17
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of purine nucleoside phosphorylase from toxoplasma2 gondii in complex with immucillin-h
32c2zy3A_



not modelled 24.3 15
PDB header:lyase
Chain: A: PDB Molecule:l-aspartate beta-decarboxylase;
PDBTitle: dodecameric l-aspartate beta-decarboxylase
33d2f4la1



not modelled 24.2 21
Fold:CUB-like
Superfamily:Acetamidase/Formamidase-like
Family:Acetamidase/Formamidase-like
34c4z92A_



not modelled 22.5 28
PDB header:virus
Chain: A: PDB Molecule:capsid subunit vp1;
PDBTitle: crystal structure of parechovirus-1 virion
35c3qrqA_



not modelled 21.9 29
PDB header:rna binding protein/rna
Chain: A: PDB Molecule:putative uncharacterized protein tthb192;
PDBTitle: structure of thermus thermophilus cse3 bound to an rna representing a2 pre-cleavage complex
36d1q1ga_



not modelled 21.1 17
Fold:Phosphorylase/hydrolase-like
Superfamily:Purine and uridine phosphorylases
Family:Purine and uridine phosphorylases
37c1nw4C_



not modelled 21.1 17
PDB header:transferase
Chain: C: PDB Molecule:uridine phosphorylase, putative;
PDBTitle: crystal structure of plasmodium falciparum purine nucleoside2 phosphorylase in complex with immh and sulfate
38c3m9bK_



not modelled 21.0 23
PDB header:chaperone
Chain: K: PDB Molecule:proteasome-associated atpase;
PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa
39c3b9tD_



not modelled 19.9 38
PDB header:hydrolase
Chain: D: PDB Molecule:twin-arginine translocation pathway signal protein;
PDBTitle: crystal structure of predicted acetamidase/formamidase (yp_546212.1)2 from methylobacillus flagellatus kt at 1.58 a resolution
40c3f6tA_



not modelled 19.3 18
PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution
41c2zy4F_



not modelled 19.1 13
PDB header:lyase
Chain: F: PDB Molecule:l-aspartate beta-decarboxylase;
PDBTitle: dodecameric l-aspartate beta-decarboxylase
42c4r31A_



not modelled 18.2 17
PDB header:transferase
Chain: A: PDB Molecule:uridine phosphorylase;
PDBTitle: crystal structure of a putative uridine phosphorylase from2 actinobacillus succinogenes 130z (target nysgrc-029667 )
43d1g7sa1



not modelled 18.0 20
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Translation proteins
Family:Elongation factors
44c1yycA_



not modelled 16.6 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative late embryogenesis abundant protein;
PDBTitle: solution structure of a putative late embryogenesis2 abundant (lea) protein at2g46140.1
45c5l9wA_



not modelled 14.7 21
PDB header:ligase
Chain: A: PDB Molecule:acetophenone carboxylase delta subunit;
PDBTitle: crystal structure of the apc core complex
46c4ldnA_



not modelled 14.5 15
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase deod-type;
PDBTitle: crystal structure of a putative purine nucleoside phosphorylase from2 vibrio fischeri es114 (target nysgrc-029521)
47c3mjjD_



not modelled 12.7 28
PDB header:hydrolase
Chain: D: PDB Molecule:predicted acetamidase/formamidase;
PDBTitle: crystal structure analysis of a recombinant predicted2 acetamidase/formamidase from the thermophile thermoanaerobacter3 tengcongensis
48d2qamc2



not modelled 12.7 31
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
49c5svbD_



not modelled 12.5 12
PDB header:ligase
Chain: D: PDB Molecule:acetone carboxylase alpha subunit;
PDBTitle: mechanism of atp-dependent acetone carboxylation, acetone carboxylase2 amp bound structure
50d3pnpa_



not modelled 12.0 15
Fold:Phosphorylase/hydrolase-like
Superfamily:Purine and uridine phosphorylases
Family:Purine and uridine phosphorylases
51d1jroa2



not modelled 11.8 21
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
52d1rl2a2



not modelled 11.5 23
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
53c4lkrA_



not modelled 11.3 13
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase deod-type;
PDBTitle: crystal structure of deod-3 gene product from shewanella oneidensis2 mr-1, nysgrc target 029437
54d1k9sa_



not modelled 11.1 15
Fold:Phosphorylase/hydrolase-like
Superfamily:Purine and uridine phosphorylases
Family:Purine and uridine phosphorylases
55c3qpbB_



not modelled 11.1 22
PDB header:transferase
Chain: B: PDB Molecule:uridine phosphorylase;
PDBTitle: crystal structure of streptococcus pyogenes uridine phosphorylase2 reveals a subclass of the np-i superfamily
56c5n76C_



not modelled 11.1 26
PDB header:nickel-binding protein
Chain: C: PDB Molecule:coot;
PDBTitle: crystal structure of the apo-form of the co dehydrogenase accessory2 protein coot from rhodospirillum rubrum
57c1gr3A_



not modelled 11.1 16
PDB header:collagen
Chain: A: PDB Molecule:collagen x;
PDBTitle: structure of the human collagen x nc1 trimer
58d1gr3a_



not modelled 11.1 16
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
59c4kmhB_



not modelled 11.0 30
PDB header:protein binding
Chain: B: PDB Molecule:suppressor of fused homolog;
PDBTitle: crystal structure of suppressor of fused d20
60d2o8ra3



not modelled 10.8 18
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Polyphosphate kinase C-terminal domain
61d2affa1



not modelled 10.5 17
Fold:SMAD/FHA domain
Superfamily:SMAD/FHA domain
Family:FHA domain
62c4lnhA_



not modelled 10.4 14
PDB header:transferase
Chain: A: PDB Molecule:uridine phosphorylase;
PDBTitle: crystal structure of uridine phosphorylase from vibrio fischeri es114,2 nysgrc target 29520.
63c2nbgA_



not modelled 10.3 27
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if-2;
PDBTitle: structure of the geobacillus stearothermophilus if2 g3-subdomain
64c1z34A_



not modelled 10.0 13
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: crystal structure of trichomonas vaginalis purine nucleoside2 phosphorylase complexed with 2-fluoro-2'-deoxyadenosine
65c4xinB_



not modelled 9.9 15
PDB header:unknown function
Chain: B: PDB Molecule:lpqh orthologue;
PDBTitle: x-ray crystal structure of an lpqh orthologue from mycobacterium avium
66c3f5tA_



not modelled 9.7 28
PDB header:viral protein
Chain: A: PDB Molecule:nonstructural protein 1;
PDBTitle: x-ray structure of h5n1 ns1
67d1xo8a_



not modelled 9.6 10
Fold:Immunoglobulin-like beta-sandwich
Superfamily:LEA14-like
Family:LEA14-like
68c4m7wA_



not modelled 9.2 15
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase deod-type;
PDBTitle: crystal structure of purine nucleoside phosphorylase from leptotrichia2 buccalis c-1013-b, nysgrc target 029767.
69c3l4qA_



not modelled 9.2 28
PDB header:viral protein/protein binding
Chain: A: PDB Molecule:non-structural protein 1;
PDBTitle: structural insights into phosphoinositide 3-kinase activation by the2 influenza a virus ns1 protein
70c3pcoD_



not modelled 9.2 15
PDB header:ligase
Chain: D: PDB Molecule:phenylalanyl-trna synthetase, beta chain;
PDBTitle: crystal structure of e. coli phenylalanine-trna synthetase complexed2 with phenylalanine and amp
71d1ndsa2



not modelled 9.0 18
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
72d1clca2



not modelled 8.7 27
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
73c4l0mA_



not modelled 8.7 22
PDB header:hydrolase
Chain: A: PDB Molecule:putative 5'-methylthioadenosine/s-adenosylhomocysteine
PDBTitle: crystal structure of a putative 5'-methylthioadenosine/s-2 adenosylhomocysteine nucleosidase from borrelia burgdorferi b31 bound3 to adenine (target nysgrc-029268 )
74d2gx9a1



not modelled 8.3 28
Fold:Ns1 effector domain-like
Superfamily:Ns1 effector domain-like
Family:Ns1 effector domain-like
75c2m0nA_



not modelled 8.2 17
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution structure of a duf3349 annotated protein from mycobacterium2 abscessus, mab_3403c. seattle structural genomics center for3 infectious disease target myaba.17112.a.a2
76d1c3ha_



not modelled 8.1 22
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
77d1vhwa_



not modelled 8.0 17
Fold:Phosphorylase/hydrolase-like
Superfamily:Purine and uridine phosphorylases
Family:Purine and uridine phosphorylases
78d3bgsa1



not modelled 7.9 19
Fold:Phosphorylase/hydrolase-like
Superfamily:Purine and uridine phosphorylases
Family:Purine and uridine phosphorylases
79c3ggsA_



not modelled 7.8 19
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase;
PDBTitle: human purine nucleoside phosphorylase double mutant e201q,n243d2 complexed with 2-fluoro-2'-deoxyadenosine
80c3d6rA_



not modelled 7.5 29
PDB header:viral protein
Chain: A: PDB Molecule:non-structural protein 1;
PDBTitle: structure of an avian influenza a virus ns1 protein2 effector domain
81d2v4ja2



not modelled 6.9 34
Fold:Ferredoxin-like
Superfamily:Nitrite/Sulfite reductase N-terminal domain-like
Family:DsrA/DsrB N-terminal-domain-like
82c4d98A_



not modelled 6.9 17
PDB header:transferase
Chain: A: PDB Molecule:purine nucleoside phosphorylase deod-type;
PDBTitle: crystal structure of the hexameric purine nucleoside phosphorylase2 from bacillus subtilis in space group h32 at ph 7.5
83d2j5wa4



not modelled 6.9 25
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
84c2csdB_



not modelled 6.8 19
PDB header:isomerase
Chain: B: PDB Molecule:topoisomerase v;
PDBTitle: crystal structure of topoisomerase v (61 kda fragment)
85c2mpvA_



not modelled 6.6 26
PDB header:protein binding
Chain: A: PDB Molecule:major fimbrial subunit of aggregative adherence fimbria ii
PDBTitle: structural insight into host recognition and biofilm formation by2 aggregative adherence fimbriae of enteroaggregative esherichia coli
86d1pk6c_



not modelled 6.4 21
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
87c1r21A_



not modelled 6.4 17
PDB header:cell cycle
Chain: A: PDB Molecule:antigen ki-67;
PDBTitle: solution structure of human ki67 fha domain
88c3bsfB_



not modelled 6.3 13
PDB header:hydrolase
Chain: B: PDB Molecule:at4g34840;
PDBTitle: crystal structure of the mta/sah nucleosidase
89c4l8jA_



not modelled 6.3 17
PDB header:transport protein
Chain: A: PDB Molecule:putative efflux transporter;
PDBTitle: crystal structure of a putative efflux transporter (bacegg_01895) from2 bacteroides eggerthii dsm 20697 at 2.06 a resolution
90d2j5wa3



not modelled 6.3 25
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
91d1odka_



not modelled 6.2 24
Fold:Phosphorylase/hydrolase-like
Superfamily:Purine and uridine phosphorylases
Family:Purine and uridine phosphorylases
92c3pbiA_



not modelled 6.1 22
PDB header:hydrolase
Chain: A: PDB Molecule:invasion protein;
PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution
93d2f9ha1



not modelled 6.1 18
Fold:PTSIIA/GutA-like
Superfamily:PTSIIA/GutA-like
Family:PTSIIA/GutA-like
94c4kdwA_



not modelled 6.1 22
PDB header:cell adhesion
Chain: A: PDB Molecule:antifreeze protein;
PDBTitle: crystal structure of a bacterial immunoglobulin-like domain from the2 m. primoryensis ice-binding adhesin
95d2j5wa1



not modelled 6.1 20
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
96c4kn5A_



not modelled 6.0 19
PDB header:hydrolase
Chain: A: PDB Molecule:methylthioadenosine nucleosidase;
PDBTitle: crystal structure of a putative methylthioadenosine nucleosidase from2 weissella paramesenteroides atcc 33313 (target nysgrc-029342 )
97d1sdda1



not modelled 6.0 26
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Multidomain cupredoxins
98d2j01h2



not modelled 5.9 14
Fold:Ribosomal protein L6
Superfamily:Ribosomal protein L6
Family:Ribosomal protein L6
99c5mx6C_



not modelled 5.8 12
PDB header:transferase
Chain: C: PDB Molecule:purine nucleoside phosphorylase deod-type;
PDBTitle: crystal structure of h. pylori purine nucleoside phosphorylase from2 clinical isolate hppnp-2

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