Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3551_(-)_3990075_3990953
DateFri Aug 9 18:20:23 BST 2019
Unique Job ID392ad940b5efb1e6
SequenceVPDKRTALDD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:55.968 Y:43.741 Z:61.809
Model (left) based on template c6co9A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:probable coa-transferase alpha subunit;
PDBTitle: crystal structure of rhodococcus jostii rha1 ipdab cochea-coa complex
Confidence and coverage
Confidence:100.0% Coverage:100%
291 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6co9A_



100.0 76
PDB header:hydrolase
Chain: A: PDB Molecule:probable coa-transferase alpha subunit;
PDBTitle: crystal structure of rhodococcus jostii rha1 ipdab cochea-coa complex
2d1poia_



100.0 27
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
3c5mzyA_



100.0 29
PDB header:lyase
Chain: A: PDB Molecule:glutaconate coa-transferase family, subunit a;
PDBTitle: crystal structure of the decarboxylase aiba/aibb in complex with a2 possible transition state analog
4d2ahua2



100.0 21
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
5d1ooya2



100.0 23
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
6c3rrlC_



100.0 25
PDB header:transferase
Chain: C: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase subunit a;
PDBTitle: complex structure of 3-oxoadipate coa-transferase subunit a and b from2 helicobacter pylori 26695
7c3cdkA_



100.0 23
PDB header:transferase
Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase
PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis
8c2ahvC_



100.0 22
PDB header:transferase
Chain: C: PDB Molecule:putative enzyme ydif;
PDBTitle: crystal structure of acyl-coa transferase from e. coli o157:h7 (ydif)-2 thioester complex with coa- 1
9d1k6da_



100.0 25
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
10c4kgbB_



100.0 20
PDB header:transferase
Chain: B: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase;
PDBTitle: structure of succinyl-coa: 3-ketoacid coa transferase from drosophila2 melanogaster
11c1ooyA_



100.0 23
PDB header:transferase
Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase,
PDBTitle: succinyl-coa:3-ketoacid coa transferase from pig heart
12c2hj0A_



100.0 18
PDB header:lyase
Chain: A: PDB Molecule:putative citrate lyase, alfa subunit;
PDBTitle: crystal structure of the putative alfa subunit of citrate lyase in2 complex with citrate from streptococcus mutans, northeast structural3 genomics target smr12 .
13c3qlkB_



100.0 22
PDB header:transferase
Chain: B: PDB Molecule:coenzyme a transferase;
PDBTitle: crystal structure of ripa from yersinia pestis
14c1xr4B_



99.9 23
PDB header:hydrolase/transferase
Chain: B: PDB Molecule:putative citrate lyase alpha chain/citrate-acp transferase;
PDBTitle: x-ray crystal structure of putative citrate lyase alpha chain/citrate-2 acp transferase [salmonella typhimurium]
15c4eu4A_



99.9 15
PDB header:transferase
Chain: A: PDB Molecule:succinyl-coa:acetate coenzyme a transferase;
PDBTitle: succinyl-coa: acetate coa-transferase (aarch6) in complex with coa2 (hexagonal lattice)
16c3gk7A_



99.9 21
PDB header:transferase
Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase;
PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase from2 clostridium aminobutyricum
17c5vitP_



99.9 18
PDB header:transferase
Chain: P: PDB Molecule:mdca;
PDBTitle: crystal structure of a pseudomonas malonate decarboxylase hetero-2 tetramer in complex with malonate
18c2g39A_



99.9 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:acetyl-coa hydrolase;
PDBTitle: crystal structure of coenzyme a transferase from pseudomonas2 aeruginosa
19c2oasA_



99.9 15
PDB header:transferase
Chain: A: PDB Molecule:4-hydroxybutyrate coenzyme a transferase;
PDBTitle: crystal structure of 4-hydroxybutyrate coenzyme a transferase (atoa)2 in complex with coa from shewanella oneidensis, northeast structural3 genomics target sor119.
20c2nvvF_



99.9 14
PDB header:hydrolase
Chain: F: PDB Molecule:acetyl-coa hydrolase/transferase family protein;
PDBTitle: crystal structure of the putative acetyl-coa hydrolase/transferase2 pg1013 from porphyromonas gingivalis, northeast structural genomics3 target pgr16.
21c3d3uA_



not modelled 99.8 16
PDB header:transferase
Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase;
PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase (abft-2) from2 porphyromonas gingivalis. northeast structural genomics consortium3 target pgr26
22c3eh7A_



not modelled 99.8 17
PDB header:transferase
Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase;
PDBTitle: the structure of a putative 4-hydroxybutyrate coa-transferase from2 porphyromonas gingivalis w83
23d2g39a1



not modelled 99.7 16
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
24d1xr4a1



not modelled 99.7 22
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
25c6eepA_



not modelled 97.9 20
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase from legionella2 pneumophila
26c5uf2A_



not modelled 97.6 21
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose 5 phosphate isomerase a from neisseria2 gonorrhoeae
27c1m0sA_



not modelled 97.6 16
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: northeast structural genomics consortium (nesg id ir21)
28c3l7oB_



not modelled 97.6 23
PDB header:isomerase
Chain: B: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from streptococcus2 mutans ua159
29d1m0sa1



not modelled 97.5 18
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
30c5dbnD_



not modelled 97.5 23
PDB header:transferase
Chain: D: PDB Molecule:acetate coa-transferase subunit beta;
PDBTitle: crystal structure of atoda complex
31c2f8mB_



not modelled 97.5 17
PDB header:isomerase
Chain: B: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: ribose 5-phosphate isomerase from plasmodium falciparum
32c6j1kA_



not modelled 97.5 23
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from ochrobactrum2 sp. csl1
33c4gmkB_



not modelled 97.4 15
PDB header:isomerase
Chain: B: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose 5-phosphate isomerase from the probiotic2 bacterium lactobacillus salivarius ucc118
34c3kwmC_



not modelled 97.3 25
PDB header:isomerase
Chain: C: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-isomerase a
35c1lk5C_



not modelled 97.3 23
PDB header:isomerase
Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase;
PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii
36c3hheA_



not modelled 97.3 16
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from bartonella2 henselae
37c1lkzB_



not modelled 97.2 21
PDB header:isomerase
Chain: B: PDB Molecule:ribose 5-phosphate isomerase a;
PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia) from2 escherichia coli.
38d2g39a2



not modelled 96.9 16
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
39c1uj6A_



not modelled 96.7 23
PDB header:isomerase
Chain: A: PDB Molecule:ribose 5-phosphate isomerase;
PDBTitle: crystal structure of thermus thermophilus ribose-5-phosphate isomerase2 complexed with arabinose-5-phosphate
40d1xr4a2



not modelled 96.2 19
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
41c2pjmA_



not modelled 96.0 17
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii
42d1uj4a1



not modelled 95.9 18
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
43d1lk5a1



not modelled 95.0 18
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
44c4nmlA_



not modelled 95.0 19
PDB header:isomerase
Chain: A: PDB Molecule:ribulose 5-phosphate isomerase;
PDBTitle: 2.60 angstrom resolution crystal structure of putative ribose 5-2 phosphate isomerase from toxoplasma gondii me49 in complex with dl-3 malic acid
45c5n02B_



not modelled 94.9 18
PDB header:lyase
Chain: B: PDB Molecule:glutaconate coa-transferase family, subunit b;
PDBTitle: crystal structure of the decarboxylase aiba/aibb c56s variant
46c3cdkD_



not modelled 93.8 18
PDB header:transferase
Chain: D: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase
PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis
47c4x84C_



not modelled 93.7 24
PDB header:isomerase
Chain: C: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from pseudomonas2 aeruginosa
48c3u7jA_



not modelled 92.7 22
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase a;
PDBTitle: crystal structure of ribose-5-phosphate isomerase a from burkholderia2 thailandensis
49c1xtzA_



not modelled 88.5 18
PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase;
PDBTitle: crystal structure of the s. cerevisiae d-ribose-5-phosphate isomerase:2 comparison with the archeal and bacterial enzymes
50d1ooya1



not modelled 63.2 20
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase beta subunit-like
51d1o8bb1



not modelled 62.5 20
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
52c3rrlD_



not modelled 59.3 13
PDB header:transferase
Chain: D: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase subunit b;
PDBTitle: complex structure of 3-oxoadipate coa-transferase subunit a and b from2 helicobacter pylori 26695
53c6conF_



not modelled 53.4 12
PDB header:hydrolase
Chain: F: PDB Molecule:coa-transferase subunit beta;
PDBTitle: crystal structure of mycobacterium tuberculosis ipdab
54c4oqqA_



not modelled 49.8 14
PDB header:transcription
Chain: A: PDB Molecule:deoxyribonucleoside regulator;
PDBTitle: structure of the effector-binding domain of deoxyribonucleoside2 regulator deor from bacillus subtilis
55d1poib_



not modelled 47.1 19
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase beta subunit-like
56c3nzeB_



not modelled 43.8 27
PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator, sugar-binding family;
PDBTitle: the crystal structure of a domain of a possible sugar-binding2 transcriptional regulator from arthrobacter aurescens tc1.
57d2r5fa1



not modelled 41.0 24
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:SorC sugar-binding domain-like
58c3n2zB_



not modelled 41.0 12
PDB header:hydrolase
Chain: B: PDB Molecule:lysosomal pro-x carboxypeptidase;
PDBTitle: the structure of human prolylcarboxypeptidase at 2.80 angstroms2 resolution
59d2ahua1



not modelled 39.2 15
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase beta subunit-like
60c6co6B_



not modelled 38.7 12
PDB header:hydrolase
Chain: B: PDB Molecule:probable coa-transferase beta subunit;
PDBTitle: crystal structure of rhodococcus jostii rha1 ipdab
61d1gdha2



not modelled 37.6 10
Fold:Flavodoxin-like
Superfamily:Formate/glycerate dehydrogenase catalytic domain-like
Family:Formate/glycerate dehydrogenases, substrate-binding domain
62c4r9nA_



not modelled 37.2 18
PDB header:transcription
Chain: A: PDB Molecule:lmo0547 protein;
PDBTitle: deor family transcriptional regulator from listeria monocytogenes.
63d2gnpa1



not modelled 37.0 14
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:SorC sugar-binding domain-like
64c1dbgA_



not modelled 35.8 24
PDB header:lyase
Chain: A: PDB Molecule:chondroitinase b;
PDBTitle: crystal structure of chondroitinase b
65d1ofla_



not modelled 29.2 24
Fold:Single-stranded right-handed beta-helix
Superfamily:Pectin lyase-like
Family:Chondroitinase B
66d1t5oa_



not modelled 28.4 14
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:IF2B-like
67c5mvrA_



not modelled 27.3 15
PDB header:transferase
Chain: A: PDB Molecule:trna threonylcarbamoyladenosine biosynthesis protein tsae;
PDBTitle: crystal structure of bacillus subtilus ydib
68d1udxa3



not modelled 25.8 26
Fold:Obg GTP-binding protein C-terminal domain
Superfamily:Obg GTP-binding protein C-terminal domain
Family:Obg GTP-binding protein C-terminal domain
69d3efba1



not modelled 23.7 22
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:SorC sugar-binding domain-like
70d1t9ka_



not modelled 21.0 17
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:IF2B-like
71d1o8ba1



not modelled 20.9 11
Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain
72c2yvkA_



not modelled 18.8 15
PDB header:isomerase
Chain: A: PDB Molecule:methylthioribose-1-phosphate isomerase;
PDBTitle: crystal structure of 5-methylthioribose 1-phosphate2 isomerase product complex from bacillus subtilis
73c5dboA_



not modelled 18.7 19
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b-like protein;
PDBTitle: crystal structure of the tetrameric eif2b-beta2-delta2 complex from c.2 thermophilum
74c6qg0G_



not modelled 18.2 20
PDB header:translation
Chain: G: PDB Molecule:translation initiation factor eif-2b subunit delta;
PDBTitle: structure of eif2b-eif2 (phosphorylated at ser51) complex (model 1)
75c4rhjE_



not modelled 18.1 24
PDB header:unknown function
Chain: E: PDB Molecule:arginase;
PDBTitle: crystal structure of wild-type t. brucei arginase-like protein in a2 reduced form
76c6i3mF_



not modelled 18.1 10
PDB header:translation
Chain: F: PDB Molecule:translation initiation factor eif-2b subunit beta;
PDBTitle: eif2b:eif2 complex, phosphorylated on eif2 alpha serine 52.
77d1p32a_



not modelled 16.6 7
Fold:Mitochondrial glycoprotein MAM33-like
Superfamily:Mitochondrial glycoprotein MAM33-like
Family:Mitochondrial glycoprotein MAM33-like
78c3kv1A_



not modelled 16.3 11
PDB header:transcription
Chain: A: PDB Molecule:transcriptional repressor;
PDBTitle: crystal structure of putative sugar-binding domain of transcriptional2 repressor from vibrio fischeri
79c5z9tB_



not modelled 15.7 29
PDB header:lyase
Chain: B: PDB Molecule:alginate lyase alyf-ou02;
PDBTitle: a new pl6 alginate lyase complex with trisaccharide
80c5b04B_



not modelled 15.4 25
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor eif-2b subunit alpha;
PDBTitle: crystal structure of the eukaryotic translation initiation factor 2b2 from schizosaccharomyces pombe
81c3gucB_



not modelled 14.9 16
PDB header:transferase
Chain: B: PDB Molecule:ubiquitin-like modifier-activating enzyme 5;
PDBTitle: human ubiquitin-activating enzyme 5 in complex with amppnp
82c2w48D_



not modelled 13.8 24
PDB header:transcription
Chain: D: PDB Molecule:sorbitol operon regulator;
PDBTitle: crystal structure of the full-length sorbitol operon2 regulator sorc from klebsiella pneumoniae
83d1iq8a1



not modelled 13.7 4
Fold:TIM beta/alpha-barrel
Superfamily:tRNA-guanine transglycosylase
Family:tRNA-guanine transglycosylase
84c4zeoH_



not modelled 13.2 19
PDB header:translation
Chain: H: PDB Molecule:translation initiation factor eif-2b-like protein;
PDBTitle: crystal structure of eif2b delta from chaetomium thermophilum
85c4zemB_



not modelled 13.0 9
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor eif2b-like protein,
PDBTitle: crystal structure of eif2b beta from chaetomium thermophilum
86d1ru4a_



not modelled 13.0 21
Fold:Single-stranded right-handed beta-helix
Superfamily:Pectin lyase-like
Family:Pectate transeliminase
87c3dhiA_



not modelled 12.6 11
PDB header:oxidoreductase
Chain: A: PDB Molecule:toluene 4-monooxygenase hydroxylase alpha subunit;
PDBTitle: crystal structure of reduced toluene 4-monoxygenase hydroxylase2 complexed with effector protein
88d1jw9b_



not modelled 12.5 23
Fold:Activating enzymes of the ubiquitin-like proteins
Superfamily:Activating enzymes of the ubiquitin-like proteins
Family:Molybdenum cofactor biosynthesis protein MoeB
89c6fpeE_



not modelled 12.4 21
PDB header:rna binding protein
Chain: E: PDB Molecule:atpase yjee, predicted to have essential role in cell wall
PDBTitle: bacterial protein complex
90c1vjtA_



not modelled 12.2 13
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-glucosidase;
PDBTitle: crystal structure of alpha-glucosidase (tm0752) from thermotoga2 maritima at 2.50 a resolution
91d2a0ma1



not modelled 12.0 18
Fold:Arginase/deacetylase
Superfamily:Arginase/deacetylase
Family:Arginase-like amidino hydrolases
92c4ljkA_



not modelled 11.8 14
PDB header:dna binding protein
Chain: A: PDB Molecule:dna processing chain a (dpra);
PDBTitle: structural insights into the unique single-stranded dna binding mode2 of dna processing protein a from helicobacter pylori
93c6i3mD_



not modelled 11.7 22
PDB header:translation
Chain: D: PDB Molecule:translation initiation factor eif-2b subunit delta;
PDBTitle: eif2b:eif2 complex, phosphorylated on eif2 alpha serine 52.
94d1kqfa1



not modelled 11.4 17
Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Formate dehydrogenase/DMSO reductase, C-terminal domain
95c6i7tB_



not modelled 11.3 14
PDB header:translation
Chain: B: PDB Molecule:translation initiation factor eif-2b subunit alpha;
PDBTitle: eif2b:eif2 complex
96c2ri0B_



not modelled 11.3 20
PDB header:hydrolase
Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase;
PDBTitle: crystal structure of glucosamine 6-phosphate deaminase (nagb) from s.2 mutans
97c3n7uD_



not modelled 11.2 7
PDB header:oxidoreductase
Chain: D: PDB Molecule:formate dehydrogenase;
PDBTitle: nad-dependent formate dehydrogenase from higher-plant arabidopsis2 thaliana in complex with nad and azide
98c4go1A_



not modelled 10.9 13
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator lsrr;
PDBTitle: crystal structure of full length transcription repressor lsrr from e.2 coli.
99c3a11D_



not modelled 10.8 10
PDB header:isomerase
Chain: D: PDB Molecule:translation initiation factor eif-2b, delta subunit;
PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1

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