Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3558_(PPE64)_3998159_3999817
DateFri Aug 9 18:20:23 BST 2019
Unique Job IDaa55ee00dabec1a1
SequenceMAHFSVLPPE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:60.357 Y:71.054 Z:73.697
Model (left) based on template c5xfsB_
Top template information
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 31%
173 residues ( 31% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 70% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xfsB_
100.0 53
PDB header:protein transport
Chain: B: PDB Molecule:ppe family protein ppe15;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
2c2g38B_
100.0 31
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ppe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
3d2g38b1
100.0 31
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PPE
4c4xy3A_
100.0 17
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion-associated protein espb;
PDBTitle: structure of esx-1 secreted protein espb
5c4wj2A_
98.8 18
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
6c2vs0B_
98.1 8
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
7c3gvmA_
97.9 11
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
8c4iogD_
97.8 13
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
9c3zbhC_
97.8 13
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
10d1wa8a1
97.4 18
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
11c4lwsA_
96.7 19
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
12c4lwsB_
96.5 10
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
13d1wa8b1
96.3 19
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
14c4i0xA_
95.5 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein mab_3112;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
15c2kg7B_
93.6 19
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
16c4i0xJ_
77.4 17
PDB header:structural genomics, unknown function
Chain: J: PDB Molecule:esat-6-like protein mab_3113;
PDBTitle: crystal structure of the mycobacterum abscessus esxef (mab_3112-2 mab_3113) complex
17d1ui5a2
77.4 26
Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
18d1xkna_
51.6 17
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
19c3h6pB_
27.8 37
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:esat-6 like protein esxs;
PDBTitle: crystal structure of rv3019c-rv3020c from mycobacterium tuberculosis
20c3r5zB_
27.2 11
PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent reductase from nocardia2 farcinica, with co-factor f420
21c2kg7A_
not modelled 27.0 39
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein esxg (pe family protein);
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
22c2iu1A_
not modelled 26.6 22
PDB header:transcription
Chain: A: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: crystal structure of eif5 c-terminal domain
23c4y9iA_
not modelled 26.3 18
PDB header:oxidoreductase
Chain: A: PDB Molecule:mycobacterium tuberculosis paralogous family 11;
PDBTitle: structure of f420-h2 dependent reductase (fdr-a) msmeg_2027
24c4n91A_
not modelled 23.6 13
PDB header:transport protein
Chain: A: PDB Molecule:trap dicarboxylate transporter, dctp subunit;
PDBTitle: crystal structure of a trap periplasmic solute binding protein from2 anaerococcus prevotii dsm 20548 (apre_1383), target efi-510023, with3 bound alpha/beta d-glucuronate
25c5frgA_
not modelled 23.2 75
PDB header:protein binding
Chain: A: PDB Molecule:formin-binding protein 1-like;
PDBTitle: the nmr structure of the cdc42-interacting region of toca1
26c2lyyB_
not modelled 23.1 15
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of the protein nb7890a from shewanella sp
27c3r5wO_
not modelled 21.3 23
PDB header:oxidoreductase
Chain: O: PDB Molecule:deazaflavin-dependent nitroreductase;
PDBTitle: structure of ddn, the deazaflavin-dependent nitroreductase from2 mycobacterium tuberculosis involved in bioreductive activation of pa-3 824, with co-factor f420
28c3jywF_
not modelled 20.4 46
PDB header:ribosome
Chain: F: PDB Molecule:60s ribosomal protein l7(a);
PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution
29c3zfsA_
not modelled 20.0 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:f420-reducing hydrogenase, subunit alpha;
PDBTitle: cryo-em structure of the f420-reducing nife-hydrogenase from a2 methanogenic archaeon with bound substrate
30c1bkvA_
not modelled 20.0 38
PDB header:structural protein
Chain: A: PDB Molecule:t3-785;
PDBTitle: collagen
31c2fulE_
not modelled 19.9 39
PDB header:translation
Chain: E: PDB Molecule:eukaryotic translation initiation factor 5;
PDBTitle: crystal structure of the c-terminal domain of s. cerevisiae eif5
32c2ahmG_
not modelled 19.0 12
PDB header:viral protein, replication
Chain: G: PDB Molecule:replicase polyprotein 1ab, heavy chain;
PDBTitle: crystal structure of sars-cov super complex of non-structural2 proteins: the hexadecamer
33c1bkvC_
not modelled 18.7 38
PDB header:structural protein
Chain: C: PDB Molecule:t3-785;
PDBTitle: collagen
34c1bkvB_
not modelled 18.7 38
PDB header:structural protein
Chain: B: PDB Molecule:t3-785;
PDBTitle: collagen
35c3h96B_
not modelled 17.6 11
PDB header:flavoprotein
Chain: B: PDB Molecule:f420-h2 dependent reductase a;
PDBTitle: msmeg_3358 f420 reductase
36c2l5bA_
not modelled 17.5 41
PDB header:apoptosis
Chain: A: PDB Molecule:activator of apoptosis harakiri;
PDBTitle: solution structure of the transmembrane domain of bcl-2 member2 harakiri in micelles
37c2l5aA_
not modelled 17.2 22
PDB header:nuclear protein
Chain: A: PDB Molecule:histone h3-like centromeric protein cse4, protein scm3,
PDBTitle: structural basis for recognition of centromere specific histone h32 variant by nonhistone scm3
38c2ke4A_
not modelled 16.0 75
PDB header:membrane protein
Chain: A: PDB Molecule:cdc42-interacting protein 4;
PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4
39c1paqA_
not modelled 16.0 15
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b epsilon
PDBTitle: crystal structure of the catalytic fragment of eukaryotic2 initiation factor 2b epsilon
40d1paqa_
not modelled 16.0 15
Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:MIF4G domain-like
41c4mnpA_
not modelled 16.0 16
PDB header:sugar binding protein
Chain: A: PDB Molecule:n-acetylneuraminate-binding protein;
PDBTitle: structure of the sialic acid binding protein from fusobacterium2 nucleatum subsp. nucleatum atcc 25586
42c3r5yC_
not modelled 15.0 17
PDB header:unknown function
Chain: C: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a deazaflavin-dependent nitroreductase from nocardia2 farcinica, with co-factor f420
43c3ub0D_
not modelled 13.5 15
PDB header:replication
Chain: D: PDB Molecule:non-structural protein 6, nsp6,;
PDBTitle: crystal structure of the nonstructural protein 7 and 8 complex of2 feline coronavirus
44c2kp7A_
not modelled 13.4 20
PDB header:hydrolase
Chain: A: PDB Molecule:crossover junction endonuclease mus81;
PDBTitle: solution nmr structure of the mus81 n-terminal hhh.2 northeast structural genomics consortium target mmt1a
45c3juiA_
not modelled 13.3 15
PDB header:translation
Chain: A: PDB Molecule:translation initiation factor eif-2b subunit epsilon;
PDBTitle: crystal structure of the c-terminal domain of human translation2 initiation factor eif2b epsilon subunit
46c3trhI_
not modelled 13.2 19
PDB header:lyase
Chain: I: PDB Molecule:phosphoribosylaminoimidazole carboxylase
PDBTitle: structure of a phosphoribosylaminoimidazole carboxylase catalytic2 subunit (pure) from coxiella burnetii
47d2ewoa1
not modelled 12.6 24
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
48c5lzkB_
not modelled 12.2 4
PDB header:structural genomics
Chain: B: PDB Molecule:protein fam83b;
PDBTitle: structure of the domain of unknown function duf1669 from human fam83b
49c3qthA_
not modelled 11.6 9
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a dinb-like protein (cps_3021) from colwellia2 psychrerythraea 34h at 2.20 a resolution
50c2hzkB_
not modelled 11.1 15
PDB header:ligand binding, transport protein
Chain: B: PDB Molecule:trap-t family sorbitol/mannitol transporter, periplasmic
PDBTitle: crystal structures of a sodium-alpha-keto acid binding subunit from a2 trap transporter in its open form
51c2jerG_
not modelled 10.6 28
PDB header:hydrolase
Chain: G: PDB Molecule:agmatine deiminase;
PDBTitle: agmatine deiminase of enterococcus faecalis catalyzing its2 reaction.
52c4el8A_
not modelled 10.2 31
PDB header:hydrolase
Chain: A: PDB Molecule:glycoside hydrolase family 48;
PDBTitle: the unliganded structure of c.bescii cela gh48 module
53c2o01H_
not modelled 9.7 22
PDB header:photosynthesis
Chain: H: PDB Molecule:photosystem i reaction center subunit vi, chloroplast;
PDBTitle: the structure of a plant photosystem i supercomplex at 3.4 angstrom2 resolution
54c6b2wB_
not modelled 9.7 13
PDB header:hydrolase
Chain: B: PDB Molecule:putative peptidyl-arginine deiminase family protein;
PDBTitle: c. jejuni c315s agmatine deiminase with substrate bound
55d2jera1
not modelled 9.5 28
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
56d1vkpa_
not modelled 9.5 31
Fold:Pentein, beta/alpha-propeller
Superfamily:Pentein
Family:Porphyromonas-type peptidylarginine deiminase
57c3j3bF_
not modelled 9.1 31
PDB header:ribosome
Chain: F: PDB Molecule:60s ribosomal protein l7;
PDBTitle: structure of the human 60s ribosomal proteins
58c5ec0A_
not modelled 9.1 33
PDB header:structural protein
Chain: A: PDB Molecule:alp7a;
PDBTitle: crystal structure of actin-like protein alp7a
59c3n6xA_
not modelled 9.1 13
PDB header:ligase
Chain: A: PDB Molecule:putative glutathionylspermidine synthase;
PDBTitle: crystal structure of a putative glutathionylspermidine synthase2 (mfla_0391) from methylobacillus flagellatus kt at 2.35 a resolution
60c3j21Y_
not modelled 9.0 25
PDB header:ribosome
Chain: Y: PDB Molecule:50s ribosomal protein l30p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
61c5hl8B_
not modelled 9.0 18
PDB header:protein transport
Chain: B: PDB Molecule:type ii secretion system protein l;
PDBTitle: 1.93 angstrom resolution crystal structure of a pullulanase-specific2 type ii secretion system integral cytoplasmic membrane protein gspl3 (c-terminal fragment; residues 309-397) from klebsiella pneumoniae4 subsp. pneumoniae ntuh-k2044
62c4kkkA_
not modelled 8.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:exoglucanase s;
PDBTitle: complex structure of catalytic domain of clostridium cellulovorans2 exgs and cellotetraose
63c3b50A_
not modelled 8.7 14
PDB header:transport protein
Chain: A: PDB Molecule:sialic acid-binding periplasmic protein siap;
PDBTitle: structure of h. influenzae sialic acid binding protein2 bound to neu5ac.
64c5i4rA_
not modelled 8.6 43
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:contact-dependent inhibitor a;
PDBTitle: contact-dependent inhibition system from escherichia coli nc101 -2 ternary cdia/cdii/ef-tu complex (trypsin-modified)
65c1l2aD_
not modelled 8.5 19
PDB header:hydrolase
Chain: D: PDB Molecule:cellobiohydrolase;
PDBTitle: the crystal structure and catalytic mechanism of2 cellobiohydrolase cels, the major enzymatic component of3 the clostridium thermocellum cellulosome
66d1l1ya_
not modelled 8.5 19
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Cellulases catalytic domain
67c4fusA_
not modelled 8.2 31
PDB header:hydrolase
Chain: A: PDB Molecule:rtx toxins and related ca2+-binding protein;
PDBTitle: the x-ray structure of hahella chejuensis family 48 glycosyl hydrolase
68c2np3A_
not modelled 8.2 10
PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family regulator;
PDBTitle: crystal structure of tetr-family regulator (sco0857) from streptomyces2 coelicolor a3.
69d2apla1
not modelled 8.2 9
Fold:PG0816-like
Superfamily:PG0816-like
Family:PG0816-like
70c2nvjA_
not modelled 8.0 30
PDB header:hydrolase
Chain: A: PDB Molecule:25mer peptide from vacuolar atp synthase subunit
PDBTitle: nmr structures of transmembrane segment from subunit a from2 the yeast proton v-atpase
71c4i6jB_
not modelled 7.8 22
PDB header:transcription
Chain: B: PDB Molecule:f-box/lrr-repeat protein 3;
PDBTitle: a ubiquitin ligase-substrate complex
72c3j39F_
not modelled 7.7 31
PDB header:ribosome
Chain: F: PDB Molecule:60s ribosomal protein l7;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
73c4jjjA_
not modelled 7.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:cellulose 1,4-beta-cellobiosidase;
PDBTitle: the structure of t. fusca gh48 d224n mutant
74c2kwuA_
not modelled 7.7 38
PDB header:protein binding/signaling protein
Chain: A: PDB Molecule:dna polymerase iota;
PDBTitle: solution structure of ubm2 of murine polymerase iota in complex with2 ubiquitin
75c6o9l6_
not modelled 7.5 40
PDB header:transcription/dna
Chain: 6: PDB Molecule:general transcription factor iih subunit 2;
PDBTitle: human holo-pic in the closed state
76c3fy6A_
not modelled 7.5 25
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:integron cassette protein;
PDBTitle: structure from the mobile metagenome of v. cholerae. integron cassette2 protein vch_cass3
77c5vmoB_
not modelled 7.5 50
PDB header:viral protein/apoptosis
Chain: B: PDB Molecule:bcl-2 interacting mediator of cell death;
PDBTitle: crystal structure of grouper iridovirus giv66:bim complex
78d2fgga1
not modelled 7.2 40
Fold:dsRBD-like
Superfamily:Rv2632c-like
Family:Rv2632c-like
79c2jtwA_
not modelled 7.2 38
PDB header:membrane protein
Chain: A: PDB Molecule:transmembrane helix 7 of yeast vatpase;
PDBTitle: solution structure of tm7 bound to dpc micelles
80c1bzgA_
not modelled 7.2 0
PDB header:hormone
Chain: A: PDB Molecule:parathyroid hormone-related protein;
PDBTitle: the solution structure of human parathyroid hormone-related2 protein (1-34) in near-physiological solution, nmr, 303 structures
81c6epiC_
not modelled 7.2 20
PDB header:toxin
Chain: C: PDB Molecule:epsilon_1 antitoxin;
PDBTitle: structure of the epsilon_1 / zeta_1 antitoxin / toxin system from2 neisseria gonorrhoeae in complex with unam-4p.
82c3izce_
not modelled 7.1 19
PDB header:ribosome
Chain: E: PDB Molecule:60s ribosomal protein rpl11 (l5p);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
83c4c5eG_
not modelled 7.0 22
PDB header:transcription
Chain: G: PDB Molecule:polycomb protein pho;
PDBTitle: crystal structure of the minimal pho-sfmbt complex (p21 spacegroup)
84c4c5eH_
not modelled 7.0 22
PDB header:transcription
Chain: H: PDB Molecule:polycomb protein pho;
PDBTitle: crystal structure of the minimal pho-sfmbt complex (p21 spacegroup)
85c4xb6D_
not modelled 6.9 11
PDB header:transferase
Chain: D: PDB Molecule:alpha-d-ribose 1-methylphosphonate 5-phosphate c-p lyase;
PDBTitle: structure of the e. coli c-p lyase core complex
86c1d0rA_
not modelled 6.9 30
PDB header:hormone/growth factor
Chain: A: PDB Molecule:glucagon-like peptide-1-(7-36)-amide;
PDBTitle: solution structure of glucagon-like peptide-1-(7-36)-amide in2 trifluoroethanol/water
87c6igzH_
not modelled 6.9 12
PDB header:plant protein
Chain: H: PDB Molecule:psah;
PDBTitle: structure of psi-lhci
88d1kx5a_
not modelled 6.8 18
Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
89c2yfwC_
not modelled 6.7 22
PDB header:cell cycle
Chain: C: PDB Molecule:histone h3-like centromeric protein cse4;
PDBTitle: heterotetramer structure of kluyveromyces lactis cse4,h4
90c6hu9u_
not modelled 6.7 27
PDB header:oxidoreductase/electron transport
Chain: U: PDB Molecule:cytochrome b-c1 complex subunit 10;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
91c3a9rA_
not modelled 6.6 14
PDB header:isomerase
Chain: A: PDB Molecule:d-arabinose isomerase;
PDBTitle: x-ray structures of bacillus pallidus d-arabinose2 isomerasecomplex with (4r)-2-methylpentane-2,4-diol
92c4wpyA_
not modelled 6.5 20
PDB header:de novo protein
Chain: A: PDB Molecule:protein dl-rv1738;
PDBTitle: racemic crystal structure of rv1738 from mycobacterium tuberculosis2 (form-ii)
93c3zf7w_
not modelled 6.5 25
PDB header:ribosome
Chain: W: PDB Molecule:60s ribosomal protein l23, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
94c2zdjA_
not modelled 6.4 50
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ttma177;
PDBTitle: crystal structure of ttma177, a hypothetical protein from2 thermus thermophilus phage tma
95d1g9ga_
not modelled 6.3 21
Fold:alpha/alpha toroid
Superfamily:Six-hairpin glycosidases
Family:Cellulases catalytic domain
96c4u0zH_
not modelled 6.3 12
PDB header:transferase
Chain: H: PDB Molecule:adenosine monophosphate-protein transferase ficd;
PDBTitle: eukaryotic fic domain containing protein with bound apcpp
97d1vqow1
not modelled 6.3 25
Fold:Ribosomal protein L30p/L7e
Superfamily:Ribosomal protein L30p/L7e
Family:Ribosomal protein L30p/L7e
98c3gyyC_
not modelled 6.2 13
PDB header:transport protein
Chain: C: PDB Molecule:periplasmic substrate binding protein;
PDBTitle: the ectoine binding protein of the teaabc trap transporter teaa in the2 apo-state
99d1uadc_
not modelled 6.1 24
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Other IPT/TIG domains

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite