Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3572_(-)_4013690_4014220
DateFri Aug 9 18:20:25 BST 2019
Unique Job ID2d8cbc88fc27997a
SequenceMTRLIPGCTL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:24.577 Y:24.403 Z:21.959
Model (left) based on template d1h3ga1
Top template information
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
Confidence and coverage
Confidence: 37.9% Coverage: 20%
35 residues ( 20% of your sequence) have been modelled with 37.9% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1h3ga1



37.9 26
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
2c5a7yA_



37.9 12
PDB header:transferase
Chain: A: PDB Molecule:trna (adenine(9)-n1)-methyltransferase;
PDBTitle: crystal structure of sulfolobus acidocaldarius trm10 in2 complex with s-adenosylhomocysteine
3d1gtfa_



28.3 23
Fold:Double-stranded beta-helix
Superfamily:TRAP-like
Family:Trp RNA-binding attenuation protein (TRAP)
4c5oevB_



19.6 11
PDB header:transferase
Chain: B: PDB Molecule:glutathione synthetase-like effector 22 (gpa-gss22-apo);
PDBTitle: the structure of a glutathione synthetase like-effector (gss22) from2 globodera pallida in apoform.
5c2hu9B_



19.0 23
PDB header:metal transport
Chain: B: PDB Molecule:mercuric transport protein periplasmic component;
PDBTitle: x-ray structure of the archaeoglobus fulgidus copz n-2 terminal domain
6c1mzwB_



18.6 50
PDB header:isomerase
Chain: B: PDB Molecule:u4/u6 snrnp 60kda protein;
PDBTitle: crystal structure of a u4/u6 snrnp complex between human2 spliceosomal cyclophilin h and a u4/u6-60k peptide
7d1olta_



17.3 13
Fold:TIM beta/alpha-barrel
Superfamily:Radical SAM enzymes
Family:Oxygen-independent coproporphyrinogen III oxidase HemN
8c2bzwB_



15.6 75
PDB header:transcription
Chain: B: PDB Molecule:bcl2-antagonist of cell death;
PDBTitle: the crystal structure of bcl-xl in complex with full-length bad
9c5oevD_



14.9 14
PDB header:transferase
Chain: D: PDB Molecule:glutathione synthetase-like effector 22 (gpa-gss22-apo);
PDBTitle: the structure of a glutathione synthetase like-effector (gss22) from2 globodera pallida in apoform.
10c6a0cB_



14.3 47
PDB header:structural protein
Chain: B: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
11c4mitE_



13.9 50
PDB header:signaling protein
Chain: E: PDB Molecule:serine/threonine protein kinase pak, putative;
PDBTitle: crystal structure of e. histolytica racc bound to the ehpak4 pbd
12c4mitG_



13.8 50
PDB header:signaling protein
Chain: G: PDB Molecule:serine/threonine protein kinase pak, putative;
PDBTitle: crystal structure of e. histolytica racc bound to the ehpak4 pbd
13c6a0cA_



13.5 47
PDB header:structural protein
Chain: A: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
14c6a0cC_



13.5 47
PDB header:structural protein
Chain: C: PDB Molecule:collagen type iii peptide;
PDBTitle: structure of a triple-helix region of human collagen type iii
15c5ancC_



13.1 37
PDB header:translation
Chain: C: PDB Molecule:60s acidic ribosomal protein p0;
PDBTitle: mechanism of eif6 release from the nascent 60s ribosomal subunit
16c2jwyA_



13.1 10
PDB header:lipoprotein
Chain: A: PDB Molecule:uncharacterized lipoprotein yaji;
PDBTitle: solution nmr structure of uncharacterized lipoprotein yaji from2 escherichia coli. northeast structural genomics target er540
17d1gyva_



12.7 44
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Clathrin adaptor appendage domain
Family:gamma-adaptin C-terminal appendage domain-like
18c2mcaA_



12.1 24
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: nmr structure of the protein yp_002937094.1 from eubacterium rectale
19c2wyoC_



12.0 26
PDB header:ligase
Chain: C: PDB Molecule:glutathione synthetase;
PDBTitle: trypanosoma brucei glutathione synthetase
20c3iz5s_



11.9 37
PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein l18a (l18ae);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
21d1m0wa1



not modelled 11.4 23
Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:Eukaryotic glutathione synthetase, substrate-binding domain
22c3kvhA_



not modelled 11.4 60
PDB header:rna binding protein
Chain: A: PDB Molecule:protein syndesmos;
PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein)
23d1wapa_



not modelled 11.1 24
Fold:Double-stranded beta-helix
Superfamily:TRAP-like
Family:Trp RNA-binding attenuation protein (TRAP)
24c1zzaA_



not modelled 10.8 60
PDB header:membrane protein
Chain: A: PDB Molecule:stannin;
PDBTitle: solution nmr structure of the membrane protein stannin
25c3izcs_



not modelled 10.8 32
PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein rpl20 (l18ae);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
26c3j3bq_



not modelled 10.4 26
PDB header:ribosome
Chain: Q: PDB Molecule:60s ribosomal protein l18;
PDBTitle: structure of the human 60s ribosomal proteins
27d1d2sa_



not modelled 10.1 9
Fold:Concanavalin A-like lectins/glucanases
Superfamily:Concanavalin A-like lectins/glucanases
Family:Laminin G-like module
28d1gywb_



not modelled 9.7 44
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Clathrin adaptor appendage domain
Family:gamma-adaptin C-terminal appendage domain-like
29d1ng0a_



not modelled 9.0 19
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Tombusviridae-like VP
30c1ng0A_



not modelled 9.0 19
PDB header:virus
Chain: A: PDB Molecule:coat protein;
PDBTitle: the three-dimensional structure of cocksfoot mottle virus at 2.7a2 resolution
31c3couA_



not modelled 8.8 60
PDB header:hydrolase
Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16;
PDBTitle: crystal structure of human nudix motif 16 (nudt16)
32c3kp9A_



not modelled 8.7 43
PDB header:blood coagulation,oxidoreductase
Chain: A: PDB Molecule:vkorc1/thioredoxin domain protein;
PDBTitle: structure of a bacterial homolog of vitamin k epoxide reductase
33c4jwjA_



not modelled 8.5 33
PDB header:transferase
Chain: A: PDB Molecule:trna (guanine(9)-n1)-methyltransferase;
PDBTitle: crystal structure of sctrm10(84)-sah complex
34c2e9gA_



not modelled 8.3 10
PDB header:protein binding
Chain: A: PDB Molecule:ap-1 complex subunit gamma-2;
PDBTitle: solution structure of the alpha adaptinc2 domain from human2 adapter-related protein complex 1 gamma 2 subunit
35c4jwhB_



not modelled 8.1 23
PDB header:transferase
Chain: B: PDB Molecule:trna (guanine(9)-n1)-methyltransferase;
PDBTitle: crystal structure of sptrm10(full length)-sah complex
36c6emsA_



not modelled 8.1 16
PDB header:rna binding protein
Chain: A: PDB Molecule:trna (guanine(9)-/adenine(9)-n1)-methyltransferase;
PDBTitle: crystal structure of dual specific trm10 construct from thermococcus2 kodakaraensis.
37c1m0tB_



not modelled 8.1 23
PDB header:ligase
Chain: B: PDB Molecule:glutathione synthetase;
PDBTitle: yeast glutathione synthase
38c6emvA_



not modelled 8.0 16
PDB header:rna binding protein
Chain: A: PDB Molecule:trna (guanine(9)-/adenine(9)-n1)-methyltransferase;
PDBTitle: crystal structure of dual specific trm10 construct from thermococcus2 kodakaraensis.
39c3ej9D_



not modelled 7.6 32
PDB header:hydrolase
Chain: D: PDB Molecule:beta-subunit of trans-3-chloroacrylic acid dehalogenase;
PDBTitle: structural and mechanistic analysis of trans-3-chloroacrylic acid2 dehalogenase activity
40c4v19P_



not modelled 7.2 40
PDB header:ribosome
Chain: P: PDB Molecule:mitoribosomal protein ul15m, mrpl15;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
41c4hubG_



not modelled 7.1 42
PDB header:ribosome
Chain: G: PDB Molecule:50s ribosomal protein l10e;
PDBTitle: the re-refined crystal structure of the haloarcula marismortui large2 ribosomal subunit at 2.4 angstrom resolution: more complete structure3 of the l7/l12 and l1 stalk, l5 and lx proteins
42c1z45A_



not modelled 7.0 22
PDB header:isomerase
Chain: A: PDB Molecule:gal10 bifunctional protein;
PDBTitle: crystal structure of the gal10 fusion protein galactose2 mutarotase/udp-galactose 4-epimerase from saccharomyces cerevisiae3 complexed with nad, udp-glucose, and galactose
43c2k8jX_



not modelled 6.9 46
PDB header:viral protein
Chain: X: PDB Molecule:p7tm2;
PDBTitle: solution structure of hcv p7 tm2
44c5nfjA_



not modelled 6.9 26
PDB header:transferase
Chain: A: PDB Molecule:mitochondrial ribonuclease p protein 1;
PDBTitle: crystal structure of the methyltransferase subunit of human2 mitochondrial ribonuclease p (mrpp1) bound to s-adenosyl-methionine3 (sam)
45d1x6ha1



not modelled 6.7 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
46c4ebjB_



not modelled 6.6 42
PDB header:transferase
Chain: B: PDB Molecule:aminoglycoside nucleotidyltransferase;
PDBTitle: crystal structure of aminoglycoside 4'-o-adenylyltransferase ant(4')-2 iib, apo
47d1ii7a_



not modelled 6.5 11
Fold:Metallo-dependent phosphatases
Superfamily:Metallo-dependent phosphatases
Family:DNA double-strand break repair nuclease
48c1bqfA_



not modelled 6.5 83
PDB header:hormone/growth factor
Chain: A: PDB Molecule:protein (growth-blocking peptide);
PDBTitle: growth-blocking peptide (gbp) from pseudaletia separata
49d1o75a2



not modelled 6.3 33
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Tp47 lipoprotein, middle and C-terminal domains
Family:Tp47 lipoprotein, middle and C-terminal domains
50d2j7ja3



not modelled 6.3 50
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
51c4jcbD_



not modelled 6.2 31
PDB header:photosynthesis
Chain: D: PDB Molecule:light-harvesting protein b-875 alpha chain;
PDBTitle: rc-lh1-pufx dimer complex from rhodobacter sphaeroides
52c6focB_



not modelled 6.1 31
PDB header:hydrolase
Chain: B: PDB Molecule:atp synthase subunit alpha,atp synthase subunit alpha,atp
PDBTitle: f1-atpase from mycobacterium smegmatis
53d2hw4a1



not modelled 5.9 14
Fold:PHP14-like
Superfamily:PHP14-like
Family:Janus/Ocnus
54c1pdlC_



not modelled 5.9 67
PDB header:hydrolase
Chain: C: PDB Molecule:tail-associated lysozyme;
PDBTitle: fitting of gp5 in the cryoem reconstruction of the bacteriophage t42 baseplate
55c4fmwA_



not modelled 5.8 23
PDB header:transferase
Chain: A: PDB Molecule:rna (guanine-9-)-methyltransferase domain-containing
PDBTitle: crystal structure of methyltransferase domain of human rna (guanine-9-2 ) methyltransferase domain containing protein 2
56c6ht4A_



not modelled 5.7 78
PDB header:unknown function
Chain: A: PDB Molecule:ns5a;
PDBTitle: nmr structure of ns5a-d2 (jfh1) peptide (304-323)
57c2hw4A_



not modelled 5.5 14
PDB header:structural genomics, hydrolase
Chain: A: PDB Molecule:14 kda phosphohistidine phosphatase;
PDBTitle: crystal structure of human phosphohistidine phosphatase
58d1b78a_



not modelled 5.4 24
Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:ITPase (Ham1)
59c6nm9A_



not modelled 5.1 27
PDB header:unknown function/rna
Chain: A: PDB Molecule:acrva4;
PDBTitle: cryoem structure of the lbcas12a-crrna-acrva4 dimer
60c3djcA_



not modelled 5.1 12
PDB header:transferase
Chain: A: PDB Molecule:type iii pantothenate kinase;
PDBTitle: crystal structure of pantothenate kinase from legionella pneumophila
61c6dx5B_



not modelled 5.1 26
PDB header:hydrolase, protein binding
Chain: B: PDB Molecule:rna-dependent rna polymerase;
PDBTitle: crystal structure of the viral otu domain protease from farallon virus

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