Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3579c_(-)_4021604_4022572
DateFri Aug 9 18:20:26 BST 2019
Unique Job IDea97a962df9d7cf5
SequenceMPGNSRRRGA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.976 Y:64.016 Z:61.065
Model (left) based on template c1gz0H_
Top template information
PDB header:transferase
Chain: H: PDB Molecule:hypothetical trna/rrna methyltransferase yjfh;
PDBTitle: 23s ribosomal rna g2251 2'o-methyltransferase rlmb
Confidence and coverage
Confidence:100.0% Coverage: 77%
247 residues ( 77% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1gz0H_



100.0 33
PDB header:transferase
Chain: H: PDB Molecule:hypothetical trna/rrna methyltransferase yjfh;
PDBTitle: 23s ribosomal rna g2251 2'o-methyltransferase rlmb
2c3gyqB_



100.0 25
PDB header:transferase
Chain: B: PDB Molecule:rrna (adenosine-2'-o-)-methyltransferase;
PDBTitle: structure of the thiostrepton-resistance methyltransferase2 s-adenosyl-l-methionine complex
3c1ipaA_



100.0 23
PDB header:transferase
Chain: A: PDB Molecule:rna 2'-o-ribose methyltransferase;
PDBTitle: crystal structure of rna 2'-o ribose methyltransferase
4c4x3mB_



100.0 25
PDB header:transferase
Chain: B: PDB Molecule:rna 2'-o ribose methyltransferase;
PDBTitle: crystal structure of ttha0275 from thermus thermophilus (hb8) in2 complex with adenosine in space group p212121
5c5kzkA_



100.0 24
PDB header:rna binding protein
Chain: A: PDB Molecule:probable rna methyltransferase, trmh family;
PDBTitle: crystal structure of rrna methyltransferase from sinorhizobium2 meliloti
6c1x7pB_



100.0 27
PDB header:transferase
Chain: B: PDB Molecule:rrna methyltransferase;
PDBTitle: crystal structure of the spou methyltransferase avirb from2 streptomyces viridochromogenes in complex with the cofactor adomet
7c2i6dA_



100.0 24
PDB header:transferase
Chain: A: PDB Molecule:rna methyltransferase, trmh family;
PDBTitle: the structure of a putative rna methyltransferase of the trmh family2 from porphyromonas gingivalis.
8d1gz0a1



100.0 41
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:SpoU-like RNA 2'-O ribose methyltransferase
9c1gz0G_



100.0 41
PDB header:transferase
Chain: G: PDB Molecule:hypothetical trna/rrna methyltransferase yjfh;
PDBTitle: 23s ribosomal rna g2251 2'o-methyltransferase rlmb
10c1zjrA_



100.0 27
PDB header:transferase
Chain: A: PDB Molecule:trna (guanosine-2'-o-)-methyltransferase;
PDBTitle: crystal structure of a. aeolicus trmh/spou trna modifying enzyme
11c5co4A_



100.0 26
PDB header:transferase
Chain: A: PDB Molecule:putative trna (cytidine(34)-2'-o)-methyltransferase;
PDBTitle: structural insights into the 2-oh methylation of c/u34 on trna
12d1v2xa_



100.0 27
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:SpoU-like RNA 2'-O ribose methyltransferase
13d1ipaa1



100.0 27
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:SpoU-like RNA 2'-O ribose methyltransferase
14c2ha8A_



100.0 21
PDB header:rna binding protein
Chain: A: PDB Molecule:tar (hiv-1) rna loop binding protein;
PDBTitle: methyltransferase domain of human tar (hiv-1) rna binding2 protein 1
15c4pzkA_



100.0 25
PDB header:transferase
Chain: A: PDB Molecule:trna (cytidine(34)-2'-o)-methyltransferase;
PDBTitle: crystal strucrure of putative rna methyltransferase from bacillus2 anthracis.
16d1mxia_



100.0 20
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:SpoU-like RNA 2'-O ribose methyltransferase
17c3onpA_



100.0 17
PDB header:transferase
Chain: A: PDB Molecule:trna/rrna methyltransferase (spou);
PDBTitle: crystal structure of trna/rrna methyltransferase spou from rhodobacter2 sphaeroides
18c3ic6A_



100.0 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative methylase family protein;
PDBTitle: crystal structure of putative methylase family protein from neisseria2 gonorrhoeae
19c5gm8A_



100.0 23
PDB header:transferase
Chain: A: PDB Molecule:trna (cytidine/uridine-2'-o-)-methyltransferase trmj;
PDBTitle: methylation at position 32 of trna catalyzed by trmj alters oxidative2 stress response in pseudomonas aeruiginosa
20c3e5yB_



100.0 21
PDB header:transferase
Chain: B: PDB Molecule:trmh family rna methyltransferase;
PDBTitle: crystal structure of trmh family rna methyltransferase from2 burkholderia pseudomallei
21c3l8uA_



not modelled 100.0 21
PDB header:transferase
Chain: A: PDB Molecule:putative rrna methylase;
PDBTitle: crystal structure of smu.1707c, a putative rrna methyltransferase from2 streptococcus mutans ua159
22c4cngB_



not modelled 100.0 20
PDB header:transferase
Chain: B: PDB Molecule:spou rrna methylase;
PDBTitle: crystal structure of sulfolobus acidocaldarius trmj in2 complex with s-adenosyl-l-homocysteine
23c5graA_



not modelled 100.0 17
PDB header:transferase
Chain: A: PDB Molecule:trna (cytidine/uridine-2'-o-)-methyltransferase trmj;
PDBTitle: crystal structure of trmj from z. mobilis zm4
24c4cndB_



not modelled 100.0 19
PDB header:transferase
Chain: B: PDB Molecule:trna (cytidine/uridine-2'-o-)-methyltransferase trmj;
PDBTitle: crystal structure of e.coli trmj
25c3ktyA_



not modelled 100.0 22
PDB header:transferase
Chain: A: PDB Molecule:probable methyltransferase;
PDBTitle: crystal structure of probable methyltransferase from bordetella2 pertussis tohama i
26c4xboA_



not modelled 100.0 20
PDB header:transferase
Chain: A: PDB Molecule:trna (cytidine/uridine-2'-o-)-methyltransferase trmj;
PDBTitle: crystal structure of full length e.coli trmj in complex with sah
27c3ilkB_



not modelled 100.0 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized trna/rrna methyltransferase hi0380;
PDBTitle: the structure of a probable methylase family protein from haemophilus2 influenzae rd kw20
28c3dcmX_



not modelled 99.9 17
PDB header:transferase
Chain: X: PDB Molecule:uncharacterized protein tm_1570;
PDBTitle: crystal structure of the thermotoga maritima spout family rna-2 methyltransferase protein tm1570 in complex with s-adenosyl-l-3 methionine
29c6ahwB_



not modelled 99.8 25
PDB header:transferase
Chain: B: PDB Molecule:circular-permutated trna (cytidine(34)-2'-o)-
PDBTitle: crystal structure of circular-permutated yibk methyltransferase from2 haemophilus influenzae
30d1gz0f2



not modelled 99.7 23
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:RNA 2'-O ribose methyltransferase substrate binding domain
31d1gz0a2



not modelled 99.6 25
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:RNA 2'-O ribose methyltransferase substrate binding domain
32d1ipaa2



not modelled 99.1 17
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:RNA 2'-O ribose methyltransferase substrate binding domain
33c2yy8B_



not modelled 97.6 21
PDB header:transferase
Chain: B: PDB Molecule:upf0106 protein ph0461;
PDBTitle: crystal structure of archaeal trna-methylase for position2 56 (atrm56) from pyrococcus horikoshii, complexed with s-3 adenosyl-l-methionine
34c1vhkA_



not modelled 97.1 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein yqeu;
PDBTitle: crystal structure of an hypothetical protein
35d1vhka2



not modelled 96.8 14
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YggJ C-terminal domain-like
36d2o3aa1



not modelled 96.7 26
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:AF0751-like
37c5o96F_



not modelled 96.3 16
PDB header:transferase
Chain: F: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: structure of the putative methyltransferase lpg2936 from legionella2 pneumophila in complex with the bound cofactor sam
38c3ai9X_



not modelled 95.7 15
PDB header:transferase
Chain: X: PDB Molecule:upf0217 protein mj1640;
PDBTitle: crystal structure of duf358 protein reveals a putative spout-class2 rrna methyltransferase
39c4a1dG_



not modelled 95.7 15
PDB header:ribosome
Chain: G: PDB Molecule:rpl30;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of3 molecule 4.
40d2bo1a1



not modelled 95.3 17
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
41c4j3cB_



not modelled 95.2 20
PDB header:transferase
Chain: B: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: crystal structure of 16s ribosomal rna methyltransferase rsme
42c1vhyB_



not modelled 95.1 16
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein hi0303;
PDBTitle: crystal structure of haemophilus influenzae protein hi0303, pfam2 duf558
43d1vqof1



not modelled 95.1 17
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
44c3zf7g_



not modelled 95.0 20
PDB header:ribosome
Chain: G: PDB Molecule:
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
45d1nxza2



not modelled 94.9 12
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YggJ C-terminal domain-like
46d1w41a1



not modelled 94.8 20
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
47d1rlga_



not modelled 94.7 15
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
48c3cpqB_



not modelled 94.6 12
PDB header:ribosomal protein
Chain: B: PDB Molecule:50s ribosomal protein l30e;
PDBTitle: crystal structure of l30e a ribosomal protein from2 methanocaldococcus jannaschii dsm2661 (mj1044)
49d1jj2f_



not modelled 94.3 17
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
50d2fc3a1



not modelled 94.2 14
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
51c2zkr6_



not modelled 94.2 18
PDB header:ribosomal protein/rna
Chain: 6: PDB Molecule:60s ribosomal protein l30e;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
52c2lbwA_



not modelled 94.2 17
PDB header:rna binding protein
Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 2;
PDBTitle: solution structure of the s. cerevisiae h/aca rnp protein nhp2p-s82w2 mutant
53c3j21Z_



not modelled 94.1 20
PDB header:ribosome
Chain: Z: PDB Molecule:50s ribosomal protein l30e;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
54d1xbia1



not modelled 94.0 14
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
55c5vm8A_



not modelled 94.0 11
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: crystal structure of a ribosomal rna small subunit methyltransferase e2 from neisseria gonorrhoeae bound to s-adenosyl methionine
56c3kw2A_



not modelled 94.0 10
PDB header:transferase
Chain: A: PDB Molecule:probable r-rna methyltransferase;
PDBTitle: crystal structure of probable rrna-methyltransferase from2 porphyromonas gingivalis
57d1t0kb_



not modelled 93.9 17
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
58d2czwa1



not modelled 93.4 13
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
59c3o85A_



not modelled 93.3 18
PDB header:ribosomal protein
Chain: A: PDB Molecule:ribosomal protein l7ae;
PDBTitle: giardia lamblia 15.5kd rna binding protein
60c4l69A_



not modelled 93.2 16
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: rv2372c of mycobacterium tuberculosis is rsme like methyltransferse
61d2aifa1



not modelled 93.0 17
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
62c5ewrA_



not modelled 92.9 20
PDB header:rna binding protein
Chain: A: PDB Molecule:box c/d snornp and u4 snrnp component snu13p;
PDBTitle: c merolae u4 snrnp protein snu13
63c3v7qB_



not modelled 92.6 14
PDB header:rna binding protein
Chain: B: PDB Molecule:probable ribosomal protein ylxq;
PDBTitle: crystal structure of b. subtilis ylxq at 1.55 a resolution
64d2qi2a3



not modelled 92.2 20
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:ERF1/Dom34 C-terminal domain-like
65d2qwva1



not modelled 92.2 16
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:AF1056-like
66c3zeyF_



not modelled 92.1 22
PDB header:ribosome
Chain: F: PDB Molecule:40s ribosomal protein s12;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
67c5xyiM_



not modelled 91.6 11
PDB header:ribosome
Chain: M: PDB Molecule:ribosomal protein l7ae, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
68d2ozba1



not modelled 91.3 13
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
69c2xznU_



not modelled 89.2 24
PDB header:ribosome
Chain: U: PDB Molecule:ribosomal protein l7ae containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
70c2ktvA_



not modelled 89.2 21
PDB header:translation
Chain: A: PDB Molecule:eukaryotic peptide chain release factor subunit 1;
PDBTitle: human erf1 c-domain, "open" conformer
71c2cx8A_



not modelled 88.1 17
PDB header:transferase
Chain: A: PDB Molecule:methyl transferase;
PDBTitle: crystal structure of methyltransferase with ligand(sah)
72c3on1A_



not modelled 88.0 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:bh2414 protein;
PDBTitle: the structure of a protein with unknown function from bacillus2 halodurans c
73c2qi2A_



not modelled 87.9 17
PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein pelota related protein;
PDBTitle: crystal structure of the thermoplasma acidophilum pelota2 protein
74d1dt9a2



not modelled 87.7 17
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:ERF1/Dom34 C-terminal domain-like
75c3j3aM_



not modelled 87.6 14
PDB header:ribosome
Chain: M: PDB Molecule:40s ribosomal protein s12;
PDBTitle: structure of the human 40s ribosomal proteins
76d1x52a1



not modelled 87.3 12
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:ERF1/Dom34 C-terminal domain-like
77c2egwB_



not modelled 87.1 17
PDB header:rna methyltransferase
Chain: B: PDB Molecule:upf0088 protein aq_165;
PDBTitle: crystal structure of rrna methyltransferase with sah ligand
78c4af1A_



not modelled 86.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:peptide chain release factor subunit 1;
PDBTitle: archeal release factor arf1
79d2vgna3



not modelled 86.9 21
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:ERF1/Dom34 C-terminal domain-like
80d2alea1



not modelled 86.6 19
Fold:Bacillus chorismate mutase-like
Superfamily:L30e-like
Family:L30e/L7ae ribosomal proteins
81d1v6za2



not modelled 86.3 17
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:YggJ C-terminal domain-like
82c1dt9A_



not modelled 85.6 17
PDB header:translation
Chain: A: PDB Molecule:protein (eukaryotic peptide chain release factor
PDBTitle: the crystal structure of human eukaryotic release factor2 erf1-mechanism of stop codon recognition and peptidyl-trna3 hydrolysis
83c2cx8B_



not modelled 85.0 18
PDB header:transferase
Chain: B: PDB Molecule:methyl transferase;
PDBTitle: crystal structure of methyltransferase with ligand(sah)
84c3agjD_



not modelled 85.0 14
PDB header:translation/hydrolase
Chain: D: PDB Molecule:protein pelota homolog;
PDBTitle: crystal structure of archaeal pelota and gtp-bound ef1 alpha complex
85c3agkA_



not modelled 84.9 26
PDB header:translation
Chain: A: PDB Molecule:peptide chain release factor subunit 1;
PDBTitle: crystal structure of archaeal translation termination factor, arf1
86c3agjB_



not modelled 84.7 14
PDB header:translation/hydrolase
Chain: B: PDB Molecule:protein pelota homolog;
PDBTitle: crystal structure of archaeal pelota and gtp-bound ef1 alpha complex
87c2vgmA_



not modelled 83.7 21
PDB header:cell cycle
Chain: A: PDB Molecule:dom34;
PDBTitle: structure of yeast dom34 : a protein related to translation2 termination factor erf1 and involved in no-go decay.
88c1z85B_



not modelled 83.7 23
PDB header:transferase
Chain: B: PDB Molecule:hypothetical protein tm1380;
PDBTitle: crystal structure of a predicted rna methyltransferase (tm1380) from2 thermotoga maritima msb8 at 2.12 a resolution
89c3obwA_



not modelled 83.1 14
PDB header:hydrolase
Chain: A: PDB Molecule:protein pelota homolog;
PDBTitle: crystal structure of two archaeal pelotas reveal inter-domain2 structural plasticity
90c2zkrf_



not modelled 81.9 17
PDB header:ribosomal protein/rna
Chain: F: PDB Molecule:rna expansion segment es7 part iii;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
91c4a1eF_



not modelled 77.5 16
PDB header:ribosome
Chain: F: PDB Molecule:rpl7a;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1
92c5xxuM_



not modelled 77.3 16
PDB header:ribosome
Chain: M: PDB Molecule:ribosomal protein es12;
PDBTitle: small subunit of toxoplasma gondii ribosome
93c2ekcA_



not modelled 76.7 17
PDB header:lyase
Chain: A: PDB Molecule:tryptophan synthase alpha chain;
PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5
94c3j15A_



not modelled 76.4 22
PDB header:translation/transport protein
Chain: A: PDB Molecule:protein pelota;
PDBTitle: model of ribosome-bound archaeal pelota and abce1
95c3mcaB_



not modelled 75.2 14
PDB header:translation regulation/hydrolase
Chain: B: PDB Molecule:protein dom34;
PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay
96c3j38M_



not modelled 74.8 14
PDB header:ribosome
Chain: M: PDB Molecule:40s ribosomal protein s12;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
97c3obyB_



not modelled 73.0 21
PDB header:hydrolase
Chain: B: PDB Molecule:protein pelota homolog;
PDBTitle: crystal structure of archaeoglobus fulgidus pelota reveals inter-2 domain structural plasticity
98d2qmma1



not modelled 72.5 20
Fold:alpha/beta knot
Superfamily:alpha/beta knot
Family:AF1056-like
99c3j61G_



not modelled 70.8 19
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l8e;
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
100c3v7eB_



not modelled 67.1 17
PDB header:ribosomal protein/rna
Chain: B: PDB Molecule:ribosome-associated protein l7ae-like;
PDBTitle: crystal structure of ybxf bound to the sam-i riboswitch aptamer
101c3e20C_



not modelled 66.0 16
PDB header:translation
Chain: C: PDB Molecule:eukaryotic peptide chain release factor subunit 1;
PDBTitle: crystal structure of s.pombe erf1/erf3 complex
102c3iz5H_



not modelled 65.2 14
PDB header:ribosome
Chain: H: PDB Molecule:60s ribosomal protein l7a (l7ae);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
103c3j3bG_



not modelled 64.4 19
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l7a;
PDBTitle: structure of the human 60s ribosomal proteins
104c3gndC_



not modelled 62.8 17
PDB header:lyase
Chain: C: PDB Molecule:aldolase lsrf;
PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate
105c2csuB_



not modelled 61.6 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:457aa long hypothetical protein;
PDBTitle: crystal structure of ph0766 from pyrococcus horikoshii ot3
106c3izcH_



not modelled 60.6 18
PDB header:ribosome
Chain: H: PDB Molecule:60s ribosomal protein rpl8 (l7ae);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
107c3ir9A_



not modelled 60.2 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:peptide chain release factor subunit 1;
PDBTitle: c-terminal domain of peptide chain release factor from methanosarcina2 mazei.
108c3e20H_



not modelled 59.5 12
PDB header:translation
Chain: H: PDB Molecule:eukaryotic peptide chain release factor subunit 1;
PDBTitle: crystal structure of s.pombe erf1/erf3 complex
109c3l07B_



not modelled 56.5 17
PDB header:oxidoreductase,hydrolase
Chain: B: PDB Molecule:bifunctional protein fold;
PDBTitle: methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate2 cyclohydrolase, putative bifunctional protein fold from francisella3 tularensis.
110c3cg6A_



not modelled 56.2 20
PDB header:cell cycle
Chain: A: PDB Molecule:growth arrest and dna-damage-inducible 45 gamma;
PDBTitle: crystal structure of gadd45 gamma
111c3ib6B_



not modelled 55.1 11
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of an uncharacterized protein from listeria2 monocytogenes serotype 4b
112c2gqnB_



not modelled 53.3 12
PDB header:lyase
Chain: B: PDB Molecule:cystathionine beta-lyase;
PDBTitle: cystathionine beta-lyase (cbl) from escherichia coli in complex with2 n-hydrazinocarbonylmethyl-2-nitro-benzamide
113c3u5cM_



not modelled 52.0 10
PDB header:ribosome
Chain: M: PDB Molecule:40s ribosomal protein s12;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome a
114d1jvna2



not modelled 43.7 9
Fold:Flavodoxin-like
Superfamily:Class I glutamine amidotransferase-like
Family:Class I glutamine amidotransferases (GAT)
115d1cs1a_



not modelled 43.7 12
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
116c2c3zA_



not modelled 42.8 14
PDB header:lyase
Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase;
PDBTitle: crystal structure of a truncated variant of indole-3-2 glycerol phosphate synthase from sulfolobus solfataricus
117c4e8bA_



not modelled 42.8 9
PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna small subunit methyltransferase e;
PDBTitle: crystal structure of 16s rrna methyltransferase rsme from e.coli
118d1xcfa_



not modelled 41.5 17
Fold:TIM beta/alpha-barrel
Superfamily:Ribulose-phoshate binding barrel
Family:Tryptophan biosynthesis enzymes
119d1cl1a_



not modelled 41.5 12
Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
120c1s1iG_



not modelled 40.6 12
PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l8-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite