Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3584_(lpqE)_4026009_4026557
DateFri Aug 9 18:20:26 BST 2019
Unique Job ID10535d4eaec81510
SequenceVNRCNIRLRL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:50.501 Y:39.342 Z:67.978
Model (left) based on template c6adqW_
Top template information
PDB header:electron transport
Chain: W: PDB Molecule:lpqe protein;
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
Confidence and coverage
Confidence:100.0% Coverage: 77%
140 residues ( 77% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6adqW_
100.0 55
PDB header:electron transport
Chain: W: PDB Molecule:lpqe protein;
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
2d1x9la_
99.9 17
Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily:DR1885-like metal-binding protein
Family:DR1885-like metal-binding protein
3c2k6zA_
99.9 14
PDB header:metal transport
Chain: A: PDB Molecule:putative uncharacterized protein ttha1943;
PDBTitle: solution structures of copper loaded form pcua (trans2 conformation of the peptide bond involving the nitrogen of3 p14)
4c3zk0A_
99.9 14
PDB header:chaperone
Chain: A: PDB Molecule:sco3965;
PDBTitle: the crystal structure of a cu(i) metallochaperone from2 streptomyces lividans in its apo form
5d1ibya_
63.9 26
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Nitrosocyanin
6d1qnia1
63.8 24
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Nitrosocyanin
7d1cuoa_
61.5 13
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
8c4f2fA_
59.0 14
PDB header:metal binding protein
Chain: A: PDB Molecule:cation-transporting atpase, e1-e2 family protein;
PDBTitle: crystal structure of the metal binding domain (mbd) of the2 streptococcus pneumoniae d39 cu(i) exporting p-type atpase copa with3 cu(i)
9c4f2eA_
57.0 21
PDB header:metal transport
Chain: A: PDB Molecule:cupa;
PDBTitle: crystal structure of the streptococcus pneumoniae d39 copper chaperone2 cupa with cu(i)
10d2cuab_
56.4 15
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Periplasmic domain of cytochrome c oxidase subunit II
11c5of1A_
52.9 22
PDB header:protein fibril
Chain: A: PDB Molecule:spore coat-associated protein n;
PDBTitle: the structural versatility of tasa in b. subtilis biofilm formation
12c2aanA_
51.6 21
PDB header:electron transport
Chain: A: PDB Molecule:auracyanin a;
PDBTitle: auracyanin a: a "blue" copper protein from the green thermophilic2 photosynthetic bacterium,chloroflexus aurantiacus
13d1jzga_
50.8 13
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
14d1fwxa1
49.2 19
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Nitrosocyanin
15d1o75a2
41.6 22
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Tp47 lipoprotein, middle and C-terminal domains
Family:Tp47 lipoprotein, middle and C-terminal domains
16d1cc3a_
38.1 29
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
17c4hcgA_
35.7 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:cupredoxin 1;
PDBTitle: uncharacterized cupredoxin-like domain protein cupredoxin_1 with zinc2 bound from bacillus anthracis
18c1xmeB_
33.4 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii;
PDBTitle: structure of recombinant cytochrome ba3 oxidase from thermus2 thermophilus
19c2gw4D_
33.3 17
PDB header:luminescent protein
Chain: D: PDB Molecule:kaede;
PDBTitle: crystal structure of stony coral fluorescent protein kaede, red form
20d2cuaa_
29.5 17
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Periplasmic domain of cytochrome c oxidase subunit II
21c3rwaE_
not modelled 28.4 17
PDB header:fluorescent protein
Chain: E: PDB Molecule:fluorescent protein fp480;
PDBTitle: crystal structure of circular-permutated mkate
22d2ccwa1
not modelled 27.1 25
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
23c4ohsB_
not modelled 25.4 23
PDB header:fluorescent protein
Chain: B: PDB Molecule:far-red fluorescent protein aq143;
PDBTitle: the structure of a far-red fluorescent protein, aq143
24c3evpA_
not modelled 25.2 13
PDB header:signaling protein
Chain: A: PDB Molecule:green fluorescent protein,green fluorescent protein;
PDBTitle: crystal structure of circular-permutated egfp
25d1xqma_
not modelled 25.0 20
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
26c2zmwC_
not modelled 23.8 30
PDB header:luminescent protein
Chain: C: PDB Molecule:fluorescent protein;
PDBTitle: crystal structure of monomeric kusabira-orange (mko), orange-emitting2 gfp-like protein, at ph 6.0
27d1wu2a1
not modelled 23.6 14
Fold:beta-clip
Superfamily:MoeA C-terminal domain-like
Family:MoeA C-terminal domain-like
28d2rh7a1
not modelled 23.3 23
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
29d1v54b1
not modelled 23.1 15
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Periplasmic domain of cytochrome c oxidase subunit II
30c2g3dB_
not modelled 22.9 13
PDB header:luminescent protein
Chain: B: PDB Molecule:green fluorescent protein;
PDBTitle: structure of s65g y66a gfp variant after spontaneous2 peptide hydrolysis
31c1yzwB_
not modelled 21.9 20
PDB header:luminescent protein
Chain: B: PDB Molecule:gfp-like non-fluorescent chromoprotein;
PDBTitle: the 2.1a crystal structure of the far-red fluorescent2 protein hcred: inherent conformational flexibility of the3 chromophore
32d3dtub1
not modelled 21.3 15
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Periplasmic domain of cytochrome c oxidase subunit II
33c3gb3B_
not modelled 21.3 20
PDB header:fluorescent protein
Chain: B: PDB Molecule:killerred;
PDBTitle: x-ray structure of genetically encoded photosensitizer killerred in2 native form
34c2c9jG_
not modelled 21.2 17
PDB header:luminescent protein
Chain: G: PDB Molecule:green fluorescent protein fp512;
PDBTitle: structure of the fluorescent protein cmfp512 at 1.35a from2 cerianthus membranaceus
35d1joia_
not modelled 20.7 25
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
36d1uisa_
not modelled 19.9 23
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
37d1jv2a2
not modelled 19.8 19
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Integrin domains
Family:Integrin domains
38c3ay2A_
not modelled 19.8 25
PDB header:antitumor protein, antiviral protein
Chain: A: PDB Molecule:lipid modified azurin protein;
PDBTitle: crystal structure of neisserial azurin
39d1nwpa_
not modelled 19.7 25
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
40d1mywa_
not modelled 19.0 13
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
41c3akoG_
not modelled 19.0 13
PDB header:fluorescent protein
Chain: G: PDB Molecule:venus;
PDBTitle: crystal structure of the reassembled venus
42c2h47C_
not modelled 19.0 25
PDB header:oxidoreductase/electron transport
Chain: C: PDB Molecule:azurin;
PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1)
43d1ggxa_
not modelled 19.0 20
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
44d1kp5a_
not modelled 18.8 13
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
45c4uznA_
not modelled 18.8 17
PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,4-glucanase (celulase b);
PDBTitle: the native structure of the family 46 carbohydrate-binding2 module (cbm46) of endo-beta-1,4-glucanase b (cel5b) from3 bacillus halodurans
46d1nkqa_
not modelled 18.6 13
Fold:FAH
Superfamily:FAH
Family:FAH
47d3ehbb1
not modelled 18.4 11
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Periplasmic domain of cytochrome c oxidase subunit II
48c2otbB_
not modelled 18.2 27
PDB header:fluorescent protein
Chain: B: PDB Molecule:gfp-like fluorescent chromoprotein cfp484;
PDBTitle: crystal structure of a monomeric cyan fluorescent protein in the2 fluorescent state
49d1qhqa_
not modelled 18.1 21
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
50c2ddcA_
not modelled 17.8 13
PDB header:luminescent protein
Chain: A: PDB Molecule:photoconvertible fluorescent protein;
PDBTitle: unique behavior of a histidine responsible for an engineered green-to-2 red photoconversion process
51c2m9lA_
not modelled 17.8 67
PDB header:toxin
Chain: A: PDB Molecule:beta-theraphotoxin-tp1a;
PDBTitle: solution structure of protoxin-1
52c3nezA_
not modelled 17.6 23
PDB header:fluorescent protein
Chain: A: PDB Molecule:mrojoa;
PDBTitle: mrojoa
53c2zo7A_
not modelled 17.5 23
PDB header:luminescent protein
Chain: A: PDB Molecule:cyan/green-emitting gfp-like protein, kusabira-cyan mutant
PDBTitle: crystal structure of a kusabira-cyan mutant (kcy-r1), a cyan/green-2 emitting gfp-like protein
54c4ndkA_
not modelled 17.5 13
PDB header:fluorescent protein, de novo protein
Chain: A: PDB Molecule:e23p-yfp, gfp-like fluorescent chromoprotein fp506,
PDBTitle: crystal structure of a computational designed engrailed homeodomain2 variant fused with yfp
55d1xi8a1
not modelled 17.4 10
Fold:beta-clip
Superfamily:MoeA C-terminal domain-like
Family:MoeA C-terminal domain-like
56d1h6ra_
not modelled 17.4 13
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
57c3ai4A_
not modelled 17.3 13
PDB header:fluorescent protein, replication
Chain: A: PDB Molecule:yeast enhanced green fluorescent protein,dna polymerase
PDBTitle: crystal structure of yeast enhanced green fluorescent protein - mouse2 polymerase iota ubiquitin binding motif fusion protein
58c3cglE_
not modelled 17.2 27
PDB header:fluorescent protein
Chain: E: PDB Molecule:gfp-like fluorescent chromoprotein dsfp483;
PDBTitle: crystal structure and raman studies of dsfp483, a cyan fluorescent2 protein from discosoma striata
59d1azca_
not modelled 17.1 29
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
60c3vhtB_
not modelled 17.0 13
PDB header:fluorescent protein/protein binding
Chain: B: PDB Molecule:green fluorescent protein,atpase wrnip1;
PDBTitle: crystal structure of gfp-wrnip1 ubz domain fusion protein in complex2 with ubiquitin
61d1oxda_
not modelled 16.9 13
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
62c4bduC_
not modelled 16.6 13
PDB header:apoptosis
Chain: C: PDB Molecule:green fluorescent protein, apoptosis regulator bax;
PDBTitle: bax bh3-in-groove dimer (gfp)
63d1ehxa_
not modelled 16.4 17
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Cellulosomal scaffoldin protein CipC, module x2.1
64c5y00A_
not modelled 16.3 17
PDB header:fluorescent protein
Chain: A: PDB Molecule:green fluorescent protein;
PDBTitle: acid-tolerant monomeric gfp, gamillus, fluorescence (on) state
65c2zo6A_
not modelled 16.2 23
PDB header:luminescent protein
Chain: A: PDB Molecule:cyan-emitting gfp-like protein, kusabira-cyan (kcy);
PDBTitle: crystal structure of kusabira-cyan (kcy), a cyan-emitting gfp-like2 protein
66c3u0kA_
not modelled 16.1 23
PDB header:fluorescent protein
Chain: A: PDB Molecule:rcamp;
PDBTitle: crystal structure of the genetically encoded calcium indicator rcamp
67c3nezB_
not modelled 15.8 23
PDB header:fluorescent protein
Chain: B: PDB Molecule:mrojoa;
PDBTitle: mrojoa
68c4xbiA_
not modelled 15.7 13
PDB header:chaperone
Chain: A: PDB Molecule:clpb protein, putative,green fluorescent protein;
PDBTitle: structure of a malarial protein involved in proteostasis
69c4pfeB_
not modelled 15.7 13
PDB header:fluorescent protein
Chain: B: PDB Molecule:green fluorescent protein;
PDBTitle: crystal structure of vsfgfp-0
70c3ai5A_
not modelled 15.6 13
PDB header:fluorescent protein, transcription
Chain: A: PDB Molecule:yeast enhanced green fluorescent protein,ubiquitin;
PDBTitle: crystal structure of yeast enhanced green fluorescent protein-2 ubiquitin fusion protein
71c2ib5H_
not modelled 15.4 13
PDB header:luminescent protein
Chain: H: PDB Molecule:chromo protein;
PDBTitle: structural characterization of a blue chromoprotein and its yellow2 mutant from the sea anemone cnidopus japonicus
72c6efrA_
not modelled 14.7 13
PDB header:choline-binding protein
Chain: A: PDB Molecule:inicsnfr 1.0, a genetically encoded nicotine biosensor,
PDBTitle: crystal structure of inicsnfr 1.0
73c4he4A_
not modelled 14.6 17
PDB header:fluorescent protein
Chain: A: PDB Molecule:yellow fluorescent protein;
PDBTitle: crystal structure of the yellow fluorescent protein phiyfp (phialidium2 sp.)
74c2zouB_
not modelled 14.4 12
PDB header:cell adhesion
Chain: B: PDB Molecule:spondin-1;
PDBTitle: crystal structure of human f-spondin reeler domain (fragment 2)
75c6f8sD_
not modelled 14.3 17
PDB header:toxin
Chain: D: PDB Molecule:putative killer protein;
PDBTitle: toxin-antitoxin complex grata
76c2jadA_
not modelled 14.0 13
PDB header:electron transport
Chain: A: PDB Molecule:yellow fluorescent protein glutaredoxin fusion protein;
PDBTitle: yellow fluorescent protein - glutaredoxin fusion protein
77c2bzvA_
not modelled 13.9 11
PDB header:viral protein
Chain: A: PDB Molecule:fiber protein 2;
PDBTitle: human enteric adenovirus serotype 41 short fiber head (ph8)
78c4txvB_
not modelled 13.6 19
PDB header:protein binding
Chain: B: PDB Molecule:cytochrome c oxidase subunit 2;
PDBTitle: crystal structure of the mixed disulfide intermediate between2 thioredoxin-like tlpas(c110s) and subunit ii of cytochrome c oxidase3 coxbpd (c233s)
79d1uz5a1
not modelled 13.2 13
Fold:beta-clip
Superfamily:MoeA C-terminal domain-like
Family:MoeA C-terminal domain-like
80c3cooB_
not modelled 13.1 12
PDB header:cell adhesion
Chain: B: PDB Molecule:spondin-1;
PDBTitle: the crystal structure of reelin-n domain of f-spondin
81d1g0da1
not modelled 13.0 12
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Transglutaminase N-terminal domain
82c2icrD_
not modelled 12.0 19
PDB header:fluorescent protein
Chain: D: PDB Molecule:red fluorescent protein zoanrfp;
PDBTitle: red fluorescent protein zrfp574 from zoanthus sp.
83c3evrA_
not modelled 11.9 13
PDB header:signaling protein
Chain: A: PDB Molecule:myosin light chain kinase, green fluorescent protein,
PDBTitle: crystal structure of calcium bound monomeric gcamp2
84c5e6wA_
not modelled 11.4 19
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-2;
PDBTitle: re-refinement of the crystal structure of the plexin-semaphorin-2 integrin domain/hybrid domain/i-egf1 segment from the human integrin3 b2 subunit
85c1o75A_
not modelled 11.4 22
PDB header:lipoproteinullntigen
Chain: A: PDB Molecule:47 kda membrane antigen;
PDBTitle: tp47, the 47-kilodalton lipoprotein of treponema pallidum
86c2p28A_
not modelled 11.4 25
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin beta-2;
PDBTitle: structure of the phe2 and phe3 fragments of the integrin beta2 subunit
87c3woaA_
not modelled 11.1 11
PDB header:dna binding protein, sugar binding prote
Chain: A: PDB Molecule:repressor protein ci, maltose-binding periplasmic protein;
PDBTitle: crystal structure of lambda repressor (1-45) fused with maltose-2 binding protein
88c5fguA_
not modelled 11.0 13
PDB header:metal binding, dna binding protein
Chain: A: PDB Molecule:green fluorescent protein,extracellular streptodornase d;
PDBTitle: structure of sda1 nuclease apoprotein as an egfp fixed-arm fusion
89c5j3nA_
not modelled 10.9 13
PDB header:hydrolase
Chain: A: PDB Molecule:green fluorescent protein,hsdr;
PDBTitle: c-terminal domain of ecor124i hsdr subunit fused with the ph-sensitive2 gfp variant ratiometric phluorin
90d1fftb1
not modelled 10.5 7
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Periplasmic domain of cytochrome c oxidase subunit II
91c6a8zB_
not modelled 10.3 23
PDB header:hydrolase
Chain: B: PDB Molecule:zinc metalloprotease, putative;
PDBTitle: crystal structure of m1 zinc metallopeptidase from deinococcus2 radiodurans
92c4xl8B_
not modelled 10.1 11
PDB header:viral protein
Chain: B: PDB Molecule:fiber-1;
PDBTitle: crystal structure of human adenovirus 52 short fiber knob in complex2 with 2-o-methyl-5-n-acetylneuraminic acid
93c4jrbA_
not modelled 10.1 13
PDB header:lipid binding protein
Chain: A: PDB Molecule:green fluorescent protein;
PDBTitle: structure of cockroach allergen bla g 1 tandem repeat as a egfp fusion
94c2z6zA_
not modelled 10.0 15
PDB header:fluorescent protein
Chain: A: PDB Molecule:fluorescent protein dronpa;
PDBTitle: crystal structure of a photoswitchable gfp-like protein2 dronpa in the bright-state
95d1rkra_
not modelled 10.0 29
Fold:Cupredoxin-like
Superfamily:Cupredoxins
Family:Plastocyanin/azurin-like
96c6m9yD_
not modelled 9.9 13
PDB header:fluorescent protein
Chain: D: PDB Molecule:fluorescent protein lanfp6a;
PDBTitle: x-ray structure of branchiostoma floridae fluorescent protein lanfp6a
97c2c9iG_
not modelled 9.9 19
PDB header:luminescent protein
Chain: G: PDB Molecule:green fluorescent protein asfp499;
PDBTitle: structure of the fluorescent protein asfp499 from anemonia2 sulcata
98d1moua_
not modelled 9.6 23
Fold:GFP-like
Superfamily:GFP-like
Family:Fluorescent proteins
99c6dgvA_
not modelled 9.3 13
PDB header:fluorescent protein
Chain: A: PDB Molecule:fluorescent gaba sensor precursor;
PDBTitle: igabasnfr fluorescent gaba sensor precursor

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