Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3594_(-)_4036036_4036863
DateFri Aug 9 18:20:27 BST 2019
Unique Job IDb7454c107bceb617
SequenceVGWIGDPIWL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:47.068 Y:53.544 Z:43.568
Model (left) based on template c2bh7A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase;
PDBTitle: crystal structure of a semet derivative of amid at 2.22 angstroms
Confidence and coverage
Confidence:100.0% Coverage: 79%
217 residues ( 79% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2bh7A_



100.0 15
PDB header:hydrolase
Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase;
PDBTitle: crystal structure of a semet derivative of amid at 2.22 angstroms
2c4bxdB_



100.0 19
PDB header:hydrolase/peptide
Chain: B: PDB Molecule:ampdh3;
PDBTitle: crystal structure of ampdh3 from pseudomonas aeruginosa in2 complex with tetrasaccharide pentapeptide
3c4bolA_



100.0 17
PDB header:hydrolase
Chain: A: PDB Molecule:ampdh2;
PDBTitle: crystal structure of ampdh2 from pseudomonas aeruginosa in2 complex with pentapeptide
4d1j3ga_



100.0 26
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
5d2bgxa2



100.0 17
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
6c3hmaA_



100.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase xlya;
PDBTitle: amidase from bacillus subtilis
7d1yb0a1



99.9 16
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
8c4ivvA_



99.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:autolysin;
PDBTitle: catalytic amidase domain of the major autolysin lyta from2 streptococcus pneumaniae
9c4olsA_



99.9 17
PDB header:hydrolase
Chain: A: PDB Molecule:endolysin;
PDBTitle: the amidase-2 domain of lysgh15
10d1sk4a_



99.9 18
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
11d1ycka1



99.9 19
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
12c2xz4A_



99.9 13
PDB header:immune system
Chain: A: PDB Molecule:peptidoglycan-recognition protein lf;
PDBTitle: crystal structure of the lfz ectodomain of the2 peptidoglycan recognition protein lf
13c2rkqA_



99.9 12
PDB header:immune system
Chain: A: PDB Molecule:peptidoglycan-recognition protein-sd;
PDBTitle: crystal structure of drosophila peptidoglycan recognition2 protein sd (pgrp-sd)
14d1ohta_



99.9 18
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
15c1ohtA_



99.9 18
PDB header:hydrolase
Chain: A: PDB Molecule:cg14704 protein;
PDBTitle: peptidoglycan recognition protein-lb
16d2cb3a1



99.9 14
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
17d2f2lx1



99.9 14
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
18d1lbaa_



99.9 24
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
19c3latB_



99.9 18
PDB header:hydrolase
Chain: B: PDB Molecule:bifunctional autolysin;
PDBTitle: crystal structure of staphylococcus peptidoglycan hydrolase2 amie
20c5xz3D_



99.8 14
PDB header:immune system
Chain: D: PDB Molecule:peptidoglycan-recognition protein;
PDBTitle: the x-ray structure of apis mellifera pgrp-sa
21c6ckhA_



not modelled 99.8 15
PDB header:immune system
Chain: A: PDB Molecule:peptidoglycan-recognition protein;
PDBTitle: manduca sexta peptidoglycan recognition protein-1
22d1sxra_



not modelled 99.8 18
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
23c1s2jA_



not modelled 99.8 18
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan recognition protein sa cg11709-pa;
PDBTitle: crystal structure of the drosophila pattern-recognition2 receptor pgrp-sa
24d2f2la1



not modelled 99.8 12
Fold:N-acetylmuramoyl-L-alanine amidase-like
Superfamily:N-acetylmuramoyl-L-alanine amidase-like
Family:N-acetylmuramoyl-L-alanine amidase-like
25c6fhgB_



not modelled 99.8 18
PDB header:antimicrobial protein
Chain: B: PDB Molecule:lyst endolysin;
PDBTitle: crystal structure of the ts2631 endolysin from thermus scotoductus2 phage with the unique n-terminal moiety responsible for peptidoglycan3 anchoring
26c3ep1B_



not modelled 99.7 17
PDB header:immune system
Chain: B: PDB Molecule:pgrp-hd - peptidoglycan recognition protein
PDBTitle: structure of the pgrp-hd from alvinella pompejana
27c4z8iA_



not modelled 99.7 16
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan recognition protein 3;
PDBTitle: crystal structure of branchiostoma belcheri tsingtauense peptidoglycan2 recognition protein 3
28c4x36A_



not modelled 99.1 20
PDB header:hydrolase
Chain: A: PDB Molecule:autolysin;
PDBTitle: crystal structure of the autolysin lyta from streptococcus pneumoniae2 tigr4
29c2xz8A_



not modelled 99.0 10
PDB header:immune system
Chain: A: PDB Molecule:peptidoglycan-recognition protein lf;
PDBTitle: crystal structure of the lfw ectodomain of the2 peptidoglycan recognition protein lf
30d2bgxa1



not modelled 98.5 9
Fold:PGBD-like
Superfamily:PGBD-like
Family:Peptidoglycan binding domain, PGBD
31c3ds8A_



not modelled 52.2 15
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin2722 protein;
PDBTitle: the crysatl structure of the gene lin2722 products from listeria2 innocua
32d2dsta1



not modelled 51.5 10
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:TTHA1544-like
33c5nm7A_



not modelled 48.6 13
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan-binding domain 1;
PDBTitle: crystal structure of burkholderia ap3 phage endolysin
34d1lbua1



not modelled 42.7 5
Fold:PGBD-like
Superfamily:PGBD-like
Family:Peptidoglycan binding domain, PGBD
35c5tv7A_



not modelled 42.6 5
PDB header:hydrolase
Chain: A: PDB Molecule:putative peptidoglycan-binding/hydrolysing protein;
PDBTitle: 2.05 angstrom resolution crystal structure of peptidoglycan-binding2 protein from clostridioides difficile in complex with glutamine3 hydroxamate.
36c5bmqA_



not modelled 42.0 6
PDB header:hydrolase
Chain: A: PDB Molecule:erfk/ybis/ycfs/ynhg family protein;
PDBTitle: crystal structure of l,d-transpeptidase (yku) from stackebrandtia2 nassauensis
37c1lbuA_



not modelled 39.1 5
PDB header:hydrolase
Chain: A: PDB Molecule:muramoyl-pentapeptide carboxypeptidase;
PDBTitle: hydrolase metallo (zn) dd-peptidase
38c1qgeD_



not modelled 32.0 15
PDB header:hydrolase
Chain: D: PDB Molecule:protein (triacylglycerol hydrolase);
PDBTitle: new crystal form of pseudomonas glumae (formerly chromobacterium2 viscosum atcc 6918) lipase
39c2odaB_



not modelled 31.0 18
PDB header:protein binding
Chain: B: PDB Molecule:hypothetical protein pspto_2114;
PDBTitle: crystal structure of pspto_2114
40c2vavL_



not modelled 30.0 13
PDB header:transferase
Chain: L: PDB Molecule:acetyl-coa--deacetylcephalosporin c acetyltransferase;
PDBTitle: crystal structure of deacetylcephalosporin c acetyltransferase (dac-2 soak)
41c2zycA_



not modelled 27.9 16
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan hydrolase flgj;
PDBTitle: crystal structure of peptidoglycan hydrolase from2 sphingomonas sp. a1
42c3i1iA_



not modelled 25.8 13
PDB header:transferase
Chain: A: PDB Molecule:homoserine o-acetyltransferase;
PDBTitle: x-ray crystal structure of homoserine o-acetyltransferase from2 bacillus anthracis
43d1t0ga_



not modelled 24.3 16
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Steroid-binding domain
44d2q3la1



not modelled 23.9 8
Fold:SpoIIaa-like
Superfamily:SpoIIaa-like
Family:Sfri0576-like
45d1h41a1



not modelled 23.9 26
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain
46d1cvla_



not modelled 22.8 15
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Bacterial lipase
47c1cr6A_



not modelled 22.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:epoxide hydrolase;
PDBTitle: crystal structure of murine soluble epoxide hydrolase2 complexed with cpu inhibitor
48c4gxtA_



not modelled 22.3 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:a conserved functionally unknown protein;
PDBTitle: the crystal structure of a conserved functionally unknown protein from2 anaerococcus prevotii dsm 20548
49c4ammA_



not modelled 21.8 23
PDB header:transferase
Chain: A: PDB Molecule:dyne8;
PDBTitle: crystal structure of the acyltransferase domain of the2 iterative polyketide synthase in enediyne biosynthesis3 reveals the molecular basis of substrate specificity
50d2pl5a1



not modelled 21.7 27
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:O-acetyltransferase
51d1ex9a_



not modelled 21.4 13
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Bacterial lipase
52c4as2D_



not modelled 21.3 20
PDB header:hydrolase
Chain: D: PDB Molecule:phosphorylcholine phosphatase;
PDBTitle: pseudomonas aeruginosa phosphorylcholine phosphatase. monoclinic form
53c3fi7A_



not modelled 20.5 28
PDB header:hydrolase
Chain: A: PDB Molecule:lmo1076 protein;
PDBTitle: crystal structure of the autolysin auto (lmo1076) from listeria2 monocytogenes, catalytic domain
54c3bkhA_



not modelled 20.4 9
PDB header:hydrolase
Chain: A: PDB Molecule:lytic transglycosylase;
PDBTitle: crystal structure of the bacteriophage phikz lytic2 transglycosylase, gp144
55c1gqkB_



not modelled 20.1 26
PDB header:hydrolase
Chain: B: PDB Molecule:alpha-d-glucuronidase;
PDBTitle: structure of pseudomonas cellulosa alpha-d-glucuronidase complexed2 with glucuronic acid
56c4gw3A_



not modelled 20.0 13
PDB header:hydrolase
Chain: A: PDB Molecule:putative lipase;
PDBTitle: crystal structure of the lipase from proteus mirabilis
57c3rgiA_



not modelled 19.7 12
PDB header:transferase
Chain: A: PDB Molecule:disd protein;
PDBTitle: trans-acting transferase from disorazole synthase
58c3im8A_



not modelled 18.7 19
PDB header:transferase
Chain: A: PDB Molecule:malonyl acyl carrier protein transacylase;
PDBTitle: crystal structure of mcat from streptococcus pneumoniae
59c1u0iB_



not modelled 18.4 35
PDB header:de novo protein
Chain: B: PDB Molecule:iaal-k3;
PDBTitle: iaal-e3/k3 heterodimer
60c3fleB_



not modelled 17.2 17
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:se_1780 protein;
PDBTitle: se_1780 protein of unknown function from staphylococcus epidermidis.
61c6cl4A_



not modelled 16.8 13
PDB header:hydrolase
Chain: A: PDB Molecule:lipase c12;
PDBTitle: lipc12 - lipase from metagenomics
62c2op6A_



not modelled 16.4 21
PDB header:peptide binding protein
Chain: A: PDB Molecule:heat shock 70 kda protein d;
PDBTitle: peptide-binding domain of heat shock 70 kda protein d precursor from2 c.elegans
63c3rxyA_



not modelled 16.2 16
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:nif3 protein;
PDBTitle: crystal structure of nif3 superfamily protein from sphaerobacter2 thermophilus
64c3lp5A_



not modelled 16.0 24
PDB header:hydrolase
Chain: A: PDB Molecule:putative cell surface hydrolase;
PDBTitle: the crystal structure of the putative cell surface hydrolase from2 lactobacillus plantarum wcfs1
65c3i28A_



not modelled 16.0 17
PDB header:hydrolase
Chain: A: PDB Molecule:epoxide hydrolase 2;
PDBTitle: crystal structure of soluble epoxide hydrolase
66c5jkjA_



not modelled 15.6 29
PDB header:hydrolase
Chain: A: PDB Molecule:esterase e22;
PDBTitle: crystal structure of esterase e22 l374d mutant
67d4lipd_



not modelled 15.2 13
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Bacterial lipase
68c4x8yA_



not modelled 14.6 20
PDB header:membrane protein
Chain: A: PDB Molecule:membrane-associated progesterone receptor component 1;
PDBTitle: crystal structure of human pgrmc1 cytochrome b5-like domain
69d1j03a_



not modelled 14.5 16
Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Steroid-binding domain
70c3tzzA_



not modelled 14.5 23
PDB header:transferase
Chain: A: PDB Molecule:polyketide synthase pks13;
PDBTitle: crystal structure of a fragment containing the acyltransferase domain2 of pks13 from mycobacterium tuberculosis in the carboxypalmitoylated3 form at 2.5 a
71c2jfkD_



not modelled 14.3 19
PDB header:transferase
Chain: D: PDB Molecule:fatty acid synthase;
PDBTitle: structure of the mat domain of human fas with malonyl-coa
72c5znsA_



not modelled 14.3 12
PDB header:hydrolase
Chain: A: PDB Molecule:chitin deacetylase;
PDBTitle: insect chitin deacetylase
73c4qbuA_



not modelled 14.1 27
PDB header:transferase
Chain: A: PDB Molecule:zmaa;
PDBTitle: structure of the acyl transferase domain of zmaa
74c3g87A_



not modelled 13.9 25
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from burkholderia pseudomallei using dried seaweed as nucleant or3 protease
75c4rr5A_



not modelled 13.7 23
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: the crystal structure of synechocystis sp. pcc 6803 malonyl-coa: acp2 transacylase
76c5czcA_



not modelled 13.4 17
PDB header:transferase
Chain: A: PDB Molecule:malonyl-coa-[acyl-carrier-protein] transacylase;
PDBTitle: the structure of vink
77c4lpqA_



not modelled 12.6 10
PDB header:transferase
Chain: A: PDB Molecule:erfk/ybis/ycfs/ynhg family protein;
PDBTitle: crystal structure of the l,d-transpeptidase (residues 123-326) from2 xylanimonas cellulosilytica dsm 15894
78c2qhvA_



not modelled 12.6 9
PDB header:transferase
Chain: A: PDB Molecule:lipoyltransferase;
PDBTitle: structural basis of octanoic acid recognition by lipoate-protein2 ligase b
79c2qhsA_



not modelled 12.6 9
PDB header:transferase
Chain: A: PDB Molecule:lipoyltransferase;
PDBTitle: structural basis of octanoic acid recognition by lipoate-protein2 ligase b
80c6fikA_



not modelled 12.5 23
PDB header:biosynthetic protein
Chain: A: PDB Molecule:polyketide synthase;
PDBTitle: acp2 crosslinked to the ks of the loading/condensing region of the2 ctb1 pks
81c2q0xA_



not modelled 12.3 11
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: alpha/beta hydrolase fold protein of unknown function
82c4qnnC_



not modelled 12.2 28
PDB header:hydrolase
Chain: C: PDB Molecule:phospholipase a 1 from hornet(vespa basalis) venom;
PDBTitle: crystal structure of phospholipase a 1 from hornet(vespa basalis)2 venom
83c6iyrA_



not modelled 12.2 23
PDB header:transferase
Chain: A: PDB Molecule:type i modular polyketide synthase;
PDBTitle: crystal structure of the acyltransferase domain from module 8 of the2 salinomycin polyketide synthase
84c2zyiB_



not modelled 12.2 17
PDB header:hydrolase
Chain: B: PDB Molecule:lipase, putative;
PDBTitle: a. fulgidus lipase with fatty acid fragment and calcium
85c2jv8A_



not modelled 12.2 22
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ne1242;
PDBTitle: solution structure of protein ne1242 from nitrosomonas2 europaea. northeast structural genomics consortium target3 net4
86c3ptwA_



not modelled 11.9 19
PDB header:transferase
Chain: A: PDB Molecule:malonyl coa-acyl carrier protein transacylase;
PDBTitle: crystal structure of malonyl coa-acyl carrier protein transacylase2 from clostridium perfringens atcc 13124
87d2juza1



not modelled 11.9 19
Fold:YejL-like
Superfamily:YejL-like
Family:YejL-like
88c3d0kA_



not modelled 11.9 13
PDB header:hydrolase
Chain: A: PDB Molecule:putative poly(3-hydroxybutyrate) depolymerase lpqc;
PDBTitle: crystal structure of the lpqc, poly(3-hydroxybutyrate) depolymerase2 from bordetella parapertussis
89c3hhdC_



not modelled 11.8 16
PDB header:transferase, hydrolase
Chain: C: PDB Molecule:fatty acid synthase;
PDBTitle: structure of the human fatty acid synthase ks-mat didomain as a2 framework for inhibitor design.
90d1k8qa_



not modelled 11.2 13
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Gastric lipase
91c5z7iC_



not modelled 10.9 24
PDB header:dna binding protein/dna
Chain: C: PDB Molecule:cell cycle regulatory protein gcra;
PDBTitle: caulobacter crescentus gcra dna-binding domain(dbd)in complex with2 unmethylated dsdna
92d1afra_



not modelled 10.8 10
Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
93c4xxtA_



not modelled 10.7 8
PDB header:hydrolase
Chain: A: PDB Molecule:fusion of predicted zn-dependent amidase/peptidase (cell
PDBTitle: crystal structure of fused zn-dependent2 amidase/peptidase/peptodoglycan-binding domain-containing protein3 from clostridium acetobutylicum atcc 824
94d1rp1a2



not modelled 10.4 24
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Pancreatic lipase, N-terminal domain
95d1f06a2



not modelled 10.3 50
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
96c4mz0B_



not modelled 10.2 19
PDB header:transferase
Chain: B: PDB Molecule:curl;
PDBTitle: structure of a ketosynthase-acyltransferase di-domain from module curl2 of the curacin a polyketide synthase
97d1lpbb2



not modelled 10.1 28
Fold:alpha/beta-Hydrolases
Superfamily:alpha/beta-Hydrolases
Family:Pancreatic lipase, N-terminal domain
98c5w8pA_



not modelled 10.0 15
PDB header:transferase
Chain: A: PDB Molecule:homoserine o-acetyltransferase;
PDBTitle: homoserine transacetylase meta from mycobacterium abscessus
99d1yuwa1



not modelled 10.0 21
Fold:Heat shock protein 70kD (HSP70), peptide-binding domain
Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain
Family:Heat shock protein 70kD (HSP70), peptide-binding domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite