1 c4e1rA_
99.9
100
PDB header: dna binding proteinChain: A: PDB Molecule: protein lsr2;PDBTitle: crystal structure of the dimerization domain of lsr2 from2 mycobacterium tuberculosis in the p 31 2 1 space group
2 c4e1pA_
99.9
100
PDB header: dna binding proteinChain: A: PDB Molecule: protein lsr2;PDBTitle: crystal structure of the dimerization domain of lsr2 from2 mycobacterium tuberculosis in the p 1 21 1 space group
3 c2kngA_
99.6
100
PDB header: dna binding proteinChain: A: PDB Molecule: protein lsr2;PDBTitle: solution structure of c-domain of lsr2
4 d2bcqa3
61.4
16
Fold: NucleotidyltransferaseSuperfamily: NucleotidyltransferaseFamily: DNA polymerase beta-like
5 c2bcuA_
55.1
16
PDB header: transferase, lyase/dnaChain: A: PDB Molecule: dna polymerase lambda;PDBTitle: dna polymerase lambda in complex with a dna duplex2 containing an unpaired damp and a t:t mismatch
6 d1boba_
54.2
15
Fold: Acyl-CoA N-acyltransferases (Nat)Superfamily: Acyl-CoA N-acyltransferases (Nat)Family: N-acetyl transferase, NAT
7 d1dgja2
53.4
21
Fold: beta-Grasp (ubiquitin-like)Superfamily: 2Fe-2S ferredoxin-likeFamily: 2Fe-2S ferredoxin domains from multidomain proteins
8 d2fmpa3
50.8
12
Fold: NucleotidyltransferaseSuperfamily: NucleotidyltransferaseFamily: DNA polymerase beta-like
9 c8iczA_
46.2
12
PDB header: transferase/dnaChain: A: PDB Molecule: protein (dna polymerase beta (e.c.2.7.7.7));PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7) complexed with2 seven base pairs of dna; soaked in the presence of of datp3 (1 millimolar), mncl2 (5 millimolar), and lithium sulfate4 (75 millimolar)
10 d1t3qa2
45.3
6
Fold: beta-Grasp (ubiquitin-like)Superfamily: 2Fe-2S ferredoxin-likeFamily: 2Fe-2S ferredoxin domains from multidomain proteins
11 c1nomA_
44.9
12
PDB header: nucleotidyltransferaseChain: A: PDB Molecule: dna polymerase beta;PDBTitle: dna polymerase beta (pol b) (e.c.2.7.7.7), 31-kd domain; soaked in the2 presence of mncl2 (5 millimolar)
12 c2eq9C_
44.0
34
PDB header: oxidoreductaseChain: C: PDB Molecule: pyruvate dehydrogenase complex, dihydrolipoamidePDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdb
13 d2vana2
42.9
12
Fold: NucleotidyltransferaseSuperfamily: NucleotidyltransferaseFamily: DNA polymerase beta-like
14 c3qd7X_
41.9
14
PDB header: hydrolaseChain: X: PDB Molecule: uncharacterized protein ydal;PDBTitle: crystal structure of ydal, a stand-alone small muts-related protein2 from escherichia coli
15 c6miwA_
41.6
19
PDB header: ligaseChain: A: PDB Molecule: e3 ubiquitin-protein ligase huwe1;PDBTitle: wwe domain of human huwe1
16 d1jqra_
40.9
31
Fold: NucleotidyltransferaseSuperfamily: NucleotidyltransferaseFamily: DNA polymerase beta-like
17 c1x4rA_
40.6
19
PDB header: apoptosisChain: A: PDB Molecule: parp14 protein;PDBTitle: solution structure of wwe domain in parp14 protein
18 c2dk6A_
40.2
25
PDB header: signaling proteinChain: A: PDB Molecule: parp11 protein;PDBTitle: solution structure of wwe domain in poly (adp-ribose)2 polymerase family, member 11 (parp 11)
19 d1jmsa4
39.0
12
Fold: NucleotidyltransferaseSuperfamily: NucleotidyltransferaseFamily: DNA polymerase beta-like
20 d1n62a2
38.5
18
Fold: beta-Grasp (ubiquitin-like)Superfamily: 2Fe-2S ferredoxin-likeFamily: 2Fe-2S ferredoxin domains from multidomain proteins
21 c4xlgB_
not modelled
36.5
42
PDB header: hydrolaseChain: B: PDB Molecule: structure-specific endonuclease subunit slx4;PDBTitle: c. glabrata slx1 in complex with slx4ccd.
22 c3auoB_
not modelled
36.5
24
PDB header: transferase/dnaChain: B: PDB Molecule: dna polymerase beta family (x family);PDBTitle: dna polymerase x from thermus thermophilus hb8 ternary complex with 1-2 nt gapped dna and ddgtp
23 c4p4oA_
not modelled
35.7
16
PDB header: transferase/dnaChain: A: PDB Molecule: dna polymerase beta;PDBTitle: crystal structure of leishmania infantum polymerase beta: ternary gap2 complex
24 d1rm6c2
not modelled
35.6
19
Fold: beta-Grasp (ubiquitin-like)Superfamily: 2Fe-2S ferredoxin-likeFamily: 2Fe-2S ferredoxin domains from multidomain proteins
25 d1ffva2
not modelled
35.3
11
Fold: beta-Grasp (ubiquitin-like)Superfamily: 2Fe-2S ferredoxin-likeFamily: 2Fe-2S ferredoxin domains from multidomain proteins
26 d1vlba2
not modelled
35.3
6
Fold: beta-Grasp (ubiquitin-like)Superfamily: 2Fe-2S ferredoxin-likeFamily: 2Fe-2S ferredoxin domains from multidomain proteins
27 c1t1eA_
not modelled
34.3
14
PDB header: hydrolaseChain: A: PDB Molecule: kumamolisin;PDBTitle: high resolution crystal structure of the intact pro-2 kumamolisin, a sedolisin type proteinase (previously3 called kumamolysin or kscp)
28 d1ujra_
not modelled
34.2
31
Fold: WWE domainSuperfamily: WWE domainFamily: WWE domain
29 c2zqeA_
not modelled
33.9
24
PDB header: dna binding proteinChain: A: PDB Molecule: muts2 protein;PDBTitle: crystal structure of the smr domain of thermus thermophilus muts2
30 d1au7a2
not modelled
33.6
41
Fold: lambda repressor-like DNA-binding domainsSuperfamily: lambda repressor-like DNA-binding domainsFamily: POU-specific domain
31 d1e3oc2
not modelled
32.9
36
Fold: lambda repressor-like DNA-binding domainsSuperfamily: lambda repressor-like DNA-binding domainsFamily: POU-specific domain
32 c6iwyA_
not modelled
32.0
11
PDB header: structural proteinChain: A: PDB Molecule: flagellar hook-associated protein 2;PDBTitle: crystal structure of the flagellar cap protein flid from helicobacter2 pylori
33 c2eq8C_
not modelled
31.6
30
PDB header: oxidoreductaseChain: C: PDB Molecule: pyruvate dehydrogenase complex, dihydrolipoamidePDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdp
34 c2w9mB_
not modelled
30.6
12
PDB header: dna replicationChain: B: PDB Molecule: polymerase x;PDBTitle: structure of family x dna polymerase from deinococcus2 radiodurans
35 c5g5gA_
not modelled
29.9
14
PDB header: oxidoreductaseChain: A: PDB Molecule: putative xanthine dehydrogenase yagt iron-sulfur-bindingPDBTitle: escherichia coli periplasmic aldehyde oxidase
36 c2m0kB_
not modelled
29.7
63
PDB header: metal binding protein/metal transportChain: B: PDB Molecule: peptide from cyclic nucleotide-gated olfactory channel;PDBTitle: 3d structure of calmodulin and calmodulin binding domain of rat2 olfactory cyclic nucleotide-gated ion channel
37 c5u4uA_
not modelled
29.2
38
PDB header: hydrolaseChain: A: PDB Molecule: mgc81300 protein;PDBTitle: pseudogtpase domain (pg1) of p190rhogap-a
38 c2m0jB_
not modelled
28.5
63
PDB header: metal binding protein/metal transportChain: B: PDB Molecule: peptide from cyclic nucleotide-gated olfactory channel;PDBTitle: 3d structure of calmodulin and calmodulin binding domain of olfactory2 cyclic nucleotide-gated ion channel complex
39 c1y56A_
not modelled
27.5
19
PDB header: oxidoreductaseChain: A: PDB Molecule: hypothetical protein ph1363;PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii
40 c1rm6F_
not modelled
27.3
19
PDB header: oxidoreductaseChain: F: PDB Molecule: 4-hydroxybenzoyl-coa reductase gamma subunit;PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica
41 c5y6qA_
not modelled
26.7
11
PDB header: oxidoreductaseChain: A: PDB Molecule: aldehyde oxidase small subunit;PDBTitle: crystal structure of an aldehyde oxidase from methylobacillus sp.2 ky4400
42 d2d9ia1
not modelled
26.0
13
Fold: IF3-likeSuperfamily: SMR domain-likeFamily: Smr domain
43 c4w9uD_
not modelled
25.7
11
PDB header: oxidoreductaseChain: D: PDB Molecule: acyl-coa dehydrogenase;PDBTitle: crystal structure of an acyl-coa dehydrogenase from brucella2 melitensis
44 c2ihmA_
not modelled
25.3
16
PDB header: transferase/dnaChain: A: PDB Molecule: dna polymerase mu;PDBTitle: polymerase mu in ternary complex with gapped 11mer dna duplex and2 bound incoming nucleotide
45 c3utkA_
not modelled
24.5
17
PDB header: protein transportChain: A: PDB Molecule: lipoprotein outs;PDBTitle: structure of the pilotin of the type ii secretion system
46 d2cyua1
not modelled
24.5
19
Fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complexSuperfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complexFamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
47 c1w3dA_
not modelled
23.9
37
PDB header: transferaseChain: A: PDB Molecule: dihydrolipoyllysine-residue acetyltransferase component ofPDBTitle: nmr structure of the peripheral-subunit binding domain of bacillus2 stearothermophilus e2p
48 c6gwjB_
not modelled
23.3
9
PDB header: rna binding proteinChain: B: PDB Molecule: ekc/keops complex subunit lage3;PDBTitle: protein complex
49 c4a56A_
not modelled
22.8
13
PDB header: protein transportChain: A: PDB Molecule: pullulanase secretion protein puls;PDBTitle: crystal structure of the type 2 secretion system pilotin2 from klebsiella oxytoca
50 c1kdhA_
not modelled
22.8
12
PDB header: transferase/dnaChain: A: PDB Molecule: terminal deoxynucleotidyltransferase shortPDBTitle: binary complex of murine terminal deoxynucleotidyl2 transferase with a primer single stranded dna
51 c4qoyE_
not modelled
22.0
44
PDB header: oxidoreductaseChain: E: PDB Molecule: pyruvate dehydrogenase (dihydrolipoyltransacetylasePDBTitle: novel binding motif and new flexibility revealed by structural2 analysis of a pyruvate dehydrogenase-dihydrolipoyl acetyltransferase3 sub-complex from the escherichia coli pyruvate dehydrogenase multi-4 enzyme complex
52 d1w85i_
not modelled
21.7
38
Fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complexSuperfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complexFamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
53 c3hrdH_
not modelled
21.6
25
PDB header: oxidoreductaseChain: H: PDB Molecule: nicotinate dehydrogenase small fes subunit;PDBTitle: crystal structure of nicotinate dehydrogenase
54 d1r7ma2
not modelled
21.6
8
Fold: Homing endonuclease-likeSuperfamily: Homing endonucleasesFamily: Group I mobile intron endonuclease
55 c1t3qD_
not modelled
21.2
6
PDB header: oxidoreductaseChain: D: PDB Molecule: quinoline 2-oxidoreductase small subunit;PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86
56 d1t1ea2
not modelled
20.2
24
Fold: Ferredoxin-likeSuperfamily: Protease propeptides/inhibitorsFamily: Subtilase propeptides/inhibitors
57 c2jvfA_
not modelled
19.9
29
PDB header: de novo proteinChain: A: PDB Molecule: de novo protein m7;PDBTitle: solution structure of m7, a computationally-designed2 artificial protein
58 d1dcja_
not modelled
19.3
16
Fold: IF3-likeSuperfamily: SirA-likeFamily: SirA-like
59 d1v97a2
not modelled
19.3
11
Fold: beta-Grasp (ubiquitin-like)Superfamily: 2Fe-2S ferredoxin-likeFamily: 2Fe-2S ferredoxin domains from multidomain proteins
60 c1n60D_
not modelled
19.1
17
PDB header: oxidoreductaseChain: D: PDB Molecule: carbon monoxide dehydrogenase small chain;PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form
61 c3v3lA_
not modelled
19.0
31
PDB header: ligaseChain: A: PDB Molecule: e3 ubiquitin-protein ligase rnf146;PDBTitle: crystal structure of human rnf146 wwe domain in complex with iso-2 adpribose
62 c4wx8A_
not modelled
18.7
9
PDB header: cell cycleChain: A: PDB Molecule: ekc/keops complex subunit pcc1;PDBTitle: crystal structure of binary complex gon7-pcc1
63 c1au7B_
not modelled
18.5
42
PDB header: transcription/dnaChain: B: PDB Molecule: protein pit-1;PDBTitle: pit-1 mutant/dna complex
64 c1zwvA_
not modelled
18.4
33
PDB header: transferaseChain: A: PDB Molecule: lipoamide acyltransferase component of branched-PDBTitle: solution structure of the subunit binding domain (hbsbd) of2 the human mitochondrial branched-chain alpha-ketoacid3 dehydrogenase
65 c6dgbA_
not modelled
18.3
31
PDB header: hydrolaseChain: A: PDB Molecule: is607 family transposase is1535;PDBTitle: crystal structure of the c-terminal catalytic domain of is1535 tnpa,2 an is607-like serine recombinase
66 d1je3a_
not modelled
18.1
26
Fold: IF3-likeSuperfamily: SirA-likeFamily: SirA-like
67 c4ochA_
not modelled
17.9
13
PDB header: hydrolaseChain: A: PDB Molecule: endonuclease muts2;PDBTitle: apo structure of smr domain of muts2 from deinococcus radiodurans
68 c1stzB_
not modelled
17.7
21
PDB header: transcriptionChain: B: PDB Molecule: heat-inducible transcription repressor hrca homolog;PDBTitle: crystal structure of a hypothetical protein at 2.2 a resolution
69 d1pava_
not modelled
17.3
14
Fold: IF3-likeSuperfamily: SirA-likeFamily: SirA-like
70 c1ffuA_
not modelled
16.7
13
PDB header: hydrolaseChain: A: PDB Molecule: cuts, iron-sulfur protein of carbon monoxidePDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor
71 d1w4ha1
not modelled
16.4
24
Fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complexSuperfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complexFamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
72 c1r7mA_
not modelled
15.9
8
PDB header: hydrolase/dnaChain: A: PDB Molecule: intron-encoded endonuclease i-scei;PDBTitle: the homing endonuclease i-scei bound to its dna recognition2 region
73 c2gzqA_
not modelled
15.8
8
PDB header: lipid binding proteinChain: A: PDB Molecule: phosphatidylethanolamine-binding protein;PDBTitle: phosphatidylethanolamine-binding protein from plasmodium vivax
74 c6hlwB_
not modelled
15.6
21
PDB header: viral proteinChain: B: PDB Molecule: genome polyprotein;PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of enterovirus-a71 (fusion protein)
75 c4zohC_
not modelled
15.5
13
PDB header: oxidoreductaseChain: C: PDB Molecule: putative oxidoreductase iron-sulfur subunit;PDBTitle: crystal structure of glyceraldehyde oxidoreductase
76 d1jroa2
not modelled
15.5
29
Fold: beta-Grasp (ubiquitin-like)Superfamily: 2Fe-2S ferredoxin-likeFamily: 2Fe-2S ferredoxin domains from multidomain proteins
77 c2cooA_
not modelled
15.5
34
PDB header: transferaseChain: A: PDB Molecule: lipoamide acyltransferase component of branched-PDBTitle: solution structure of the e3_binding domain of2 dihydrolipoamide branched chaintransacylase
78 c4je5C_
not modelled
15.4
15
PDB header: transferaseChain: C: PDB Molecule: aromatic/aminoadipate aminotransferase 1;PDBTitle: crystal structure of the aromatic aminotransferase aro8, a putative2 alpha-aminoadipate aminotransferase in saccharomyces cerevisiae
79 d2ezha_
not modelled
15.4
19
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Recombinase DNA-binding domain
80 c3dv0I_
not modelled
15.3
38
PDB header: oxidoreductase/transferaseChain: I: PDB Molecule: dihydrolipoyllysine-residue acetyltransferasePDBTitle: snapshots of catalysis in the e1 subunit of the pyruvate2 dehydrogenase multi-enzyme complex
81 d1vl2a1
not modelled
14.6
15
Fold: Adenine nucleotide alpha hydrolase-likeSuperfamily: Adenine nucleotide alpha hydrolases-likeFamily: N-type ATP pyrophosphatases
82 c4es2A_
not modelled
14.6
14
PDB header: hydrolaseChain: A: PDB Molecule: bh0342 protein;PDBTitle: double-stranded endonuclease activity in b. halodurans clustered2 regularly interspaced short palindromic repeats (crispr)-associated3 cas2 protein
83 d1m0da_
not modelled
13.7
30
Fold: Restriction endonuclease-likeSuperfamily: Restriction endonuclease-likeFamily: Endonuclease I (Holliday junction resolvase)
84 c4g29A_
not modelled
13.5
20
PDB header: protein bindingChain: A: PDB Molecule: secreted effector protein ssei;PDBTitle: structure of the catalytic domain of the salmonella virulence factor2 ssei
85 c3edyA_
not modelled
13.5
11
PDB header: hydrolaseChain: A: PDB Molecule: tripeptidyl-peptidase 1;PDBTitle: crystal structure of the precursor form of human tripeptidyl-peptidase2 1
86 d1zpwx1
not modelled
13.3
14
Fold: Ferredoxin-likeSuperfamily: TTP0101/SSO1404-likeFamily: TTP0101/SSO1404-like
87 d1bala_
not modelled
13.1
20
Fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complexSuperfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complexFamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
88 c3lhkA_
not modelled
13.0
31
PDB header: dna binding proteinChain: A: PDB Molecule: putative dna binding protein mj0014;PDBTitle: crystal structure of putative dna binding protein from2 methanocaldococcus jannaschii.
89 c2hlsB_
not modelled
12.9
39
PDB header: oxidoreductaseChain: B: PDB Molecule: protein disulfide oxidoreductase;PDBTitle: the crystal structure of a protein disulfide oxidoreductase from2 aeropyrum pernix k1
90 d1jdqa_
not modelled
12.9
26
Fold: IF3-likeSuperfamily: SirA-likeFamily: SirA-like
91 c2fuvB_
not modelled
12.9
18
PDB header: isomeraseChain: B: PDB Molecule: phosphoglucomutase;PDBTitle: phosphoglucomutase from salmonella typhimurium.
92 c6iw6A_
not modelled
12.8
21
PDB header: transferaseChain: A: PDB Molecule: terminal uridylyltransferase 4,terminal uridylyltransferasePDBTitle: crystal structure of the lin28-interacting module of human tut4
93 c2p0wB_
not modelled
12.5
14
PDB header: transferaseChain: B: PDB Molecule: histone acetyltransferase type b catalytic subunit;PDBTitle: human histone acetyltransferase 1 (hat1)
94 d2ezia_
not modelled
12.3
24
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: Homeodomain-likeFamily: Recombinase DNA-binding domain
95 d1bf4a_
not modelled
12.3
44
Fold: SH3-like barrelSuperfamily: Chromo domain-likeFamily: "Histone-like" proteins from archaea
96 c2eq7C_
not modelled
12.0
19
PDB header: oxidoreductaseChain: C: PDB Molecule: 2-oxoglutarate dehydrogenase e2 component;PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo
97 c1w4kA_
not modelled
12.0
28
PDB header: transferaseChain: A: PDB Molecule: pyruvate dehydrogenase e2;PDBTitle: peripheral-subunit binding domains from mesophilic,2 thermophilic, and hyperthermophilic bacteria fold by3 ultrafast, apparently two-state transitions
98 c5h1pB_
not modelled
11.9
21
PDB header: hydrolaseChain: B: PDB Molecule: crispr-associated endoribonuclease cas2;PDBTitle: crispr-associated protein
99 c6hltD_
not modelled
11.9
19
PDB header: viral proteinChain: D: PDB Molecule: genome polyprotein;PDBTitle: crystal structure of human acbd3 gold domain in complex with 3a2 protein of rhinovirus-14 (hrv14)
