Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3604c_(-)_4046482_4047675
DateFri Aug 9 18:20:28 BST 2019
Unique Job ID7d8a2126649bb2e7
SequenceMTVLSRGARV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:24.804 Y:31.946 Z:62.112
Model (left) based on template c2pjwH_
Top template information
PDB header:endocytosis/exocytosis
Chain: H: PDB Molecule:uncharacterized protein yhl002w;
PDBTitle: the vps27/hse1 complex is a gat domain-based scaffold for ubiquitin-2 dependent sorting
Confidence and coverage
Confidence: 96.2% Coverage: 17%
68 residues ( 17% of your sequence) have been modelled with 96.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Warning: 70% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2pjwH_
96.2 9
PDB header:endocytosis/exocytosis
Chain: H: PDB Molecule:uncharacterized protein yhl002w;
PDBTitle: the vps27/hse1 complex is a gat domain-based scaffold for ubiquitin-2 dependent sorting
2d2r6gf1
91.3 13
Fold:MalF N-terminal region-like
Superfamily:MalF N-terminal region-like
Family:MalF N-terminal region-like
3c6dt0D_
89.9 19
PDB header:transport protein
Chain: D: PDB Molecule:mitochondrial calcium uniporter;
PDBTitle: cryo-em structure of a mitochondrial calcium uniporter
4c5d3aA_
87.4 17
PDB header:motor protein
Chain: A: PDB Molecule:kinesin-like protein kif21a;
PDBTitle: kif21a regulatory coiled coil
5c6iedA_
86.5 11
PDB header:membrane protein
Chain: A: PDB Molecule:heme a synthase;
PDBTitle: crystal structure of heme a synthase from bacillus subtilis
6c6iu3A_
84.3 9
PDB header:metal transport
Chain: A: PDB Molecule:vit1;
PDBTitle: crystal structure of iron transporter vit1 with zinc ions
7c4clvB_
76.2 16
PDB header:metal binding protein
Chain: B: PDB Molecule:nickel-cobalt-cadmium resistance protein nccx;
PDBTitle: crystal structure of dodecylphosphocholine-solubilized nccx2 from cupriavidus metallidurans 31a
8c5u0pG_
72.2 22
PDB header:transcription
Chain: G: PDB Molecule:mediator complex subunit 7;
PDBTitle: cryo-em structure of the transcriptional mediator
9c6mjpG_
71.9 15
PDB header:lipid transport
Chain: G: PDB Molecule:lps export abc transporter permease lptg;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
10c6d80A_
70.4 17
PDB header:transport protein
Chain: A: PDB Molecule:mitochondrial calcium uniporter;
PDBTitle: cryo-em structure of the mitochondrial calcium uniporter from n.2 fischeri bound to saposin
11c3tnuA_
68.4 17
PDB header:cytosolic protein
Chain: A: PDB Molecule:keratin, type i cytoskeletal 14;
PDBTitle: heterocomplex of coil 2b domains of human intermediate filament2 proteins, keratin 5 (krt5) and keratin 14 (krt14)
12c3m9bK_
67.1 34
PDB header:chaperone
Chain: K: PDB Molecule:proteasome-associated atpase;
PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa
13c4akkA_
63.9 24
PDB header:transcription
Chain: A: PDB Molecule:nitrate regulatory protein;
PDBTitle: structure of the nasr transcription antiterminator
14c5nf8A_
62.3 16
PDB header:membrane protein
Chain: A: PDB Molecule:respiratory supercomplex factor 1, mitochondrial;
PDBTitle: solution structure of detergent-solubilized rcf1, a yeast2 mitochondrial inner membrane protein involved in respiratory complex3 iii/iv supercomplex formation
15c4o9uB_
61.3 29
PDB header:membrane protein
Chain: B: PDB Molecule:nad(p) transhydrogenase subunit beta;
PDBTitle: mechanism of transhydrogenase coupling proton translocation and2 hydride transfer
16c3k8vB_
60.2 17
PDB header:structural protein
Chain: B: PDB Molecule:flagellin homolog;
PDBTitle: crysatl structure of a bacterial cell-surface flagellin n20c20
17c6c5wA_
59.2 18
PDB header:membrane protein
Chain: A: PDB Molecule:calcium uniporter;
PDBTitle: crystal structure of the mitochondrial calcium uniporter
18c5kw2A_
59.2 30
PDB header:fatty acid binding protein/hydrolase
Chain: A: PDB Molecule:free fatty acid receptor 1,lysozyme,free fatty acid
PDBTitle: the extra-helical binding site of gpr40 and the structural basis for2 allosteric agonism and incretin stimulation
19d2pila_
58.6 31
Fold:Pili subunits
Superfamily:Pili subunits
Family:Pilin
20c6hu9U_
58.1 27
PDB header:oxidoreductase/electron transport
Chain: U: PDB Molecule:cytochrome b-c1 complex subunit 10;
PDBTitle: iii2-iv2 mitochondrial respiratory supercomplex from s. cerevisiae
21c5x5yG_
not modelled 58.0 10
PDB header:membrane protein
Chain: G: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
22c6mquC_
not modelled 57.4 28
PDB header:de novo protein
Chain: C: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
23c3sokB_
not modelled 57.3 25
PDB header:cell adhesion
Chain: B: PDB Molecule:fimbrial protein;
PDBTitle: dichelobacter nodosus pilin fima
24c6mquA_
not modelled 57.1 28
PDB header:de novo protein
Chain: A: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
25c6mquH_
not modelled 57.1 28
PDB header:de novo protein
Chain: H: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
26c6mquG_
not modelled 57.0 28
PDB header:de novo protein
Chain: G: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
27c6mquB_
not modelled 57.0 28
PDB header:de novo protein
Chain: B: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
28c4mt1A_
not modelled 56.9 8
PDB header:membrane protein, tranport protein
Chain: A: PDB Molecule:drug efflux protein;
PDBTitle: crystal structure of the neisseria gonorrhoeae mtrd inner membrane2 multidrug efflux pump
29c6mquI_
not modelled 56.1 28
PDB header:de novo protein
Chain: I: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
30c6mquF_
not modelled 56.1 28
PDB header:de novo protein
Chain: F: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
31c6mquD_
not modelled 56.1 28
PDB header:de novo protein
Chain: D: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
32c5wosA_
not modelled 55.7 11
PDB header:viral protein
Chain: A: PDB Molecule:cnpv058 bcl-2 like protein;
PDBTitle: structural and functional insights into canarypox virus cnp0582 regulation of apoptosis
33c4dveA_
not modelled 55.1 8
PDB header:transport protein
Chain: A: PDB Molecule:biotin transporter bioy;
PDBTitle: crystal structure at 2.1 a of the s-component for biotin from an ecf-2 type abc transporter
34c3k8wA_
not modelled 55.0 17
PDB header:structural protein
Chain: A: PDB Molecule:flagellin homolog;
PDBTitle: crysatl structure of a bacterial cell-surface flagellin n20c45
35c4uicA_
not modelled 54.7 20
PDB header:sugar binding protein
Chain: A: PDB Molecule:surface layer protein;
PDBTitle: crystal structure of the s-layer protein rsbsc(31-844)
36c6mquE_
not modelled 54.3 28
PDB header:de novo protein
Chain: E: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
37c6mquJ_
not modelled 54.3 28
PDB header:de novo protein
Chain: J: PDB Molecule:pl5, designed tm pentamer;
PDBTitle: pl5, synthetic transmembrane domain variant of human phospholamban
38c3u5eh_
not modelled 54.0 30
PDB header:ribosome
Chain: H: PDB Molecule:60s ribosomal protein l9-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 60s subunit, ribosome a
39c2a3dA_
not modelled 52.5 28
PDB header:three-helix bundle
Chain: A: PDB Molecule:protein (de novo three-helix bundle);
PDBTitle: solution structure of a de novo designed single chain three-2 helix bundle (a3d)
40c4o9tH_
not modelled 52.4 23
PDB header:membrane protein
Chain: H: PDB Molecule:nad(p) transhydrogenase subunit beta;
PDBTitle: mechanism of transhydrogenase coupling proton translocation and2 hydride transfer
41c6j5ib_
not modelled 51.7 15
PDB header:membrane protein
Chain: B: PDB Molecule:atp synthase subunit alpha, mitochondrial;
PDBTitle: cryo-em structure of the mammalian dp-state atp synthase
42c3wajA_
not modelled 50.6 11
PDB header:transferase
Chain: A: PDB Molecule:transmembrane oligosaccharyl transferase;
PDBTitle: crystal structure of the archaeoglobus fulgidus2 oligosaccharyltransferase (o29867_arcfu) complex with zn and sulfate
43c4k0eA_
not modelled 50.4 9
PDB header:transport protein
Chain: A: PDB Molecule:heavy metal cation tricomponent efflux pump znea(czca-
PDBTitle: x-ray crystal structure of a heavy metal efflux pump, crystal form ii
44c6o58C_
not modelled 50.0 16
PDB header:transport protein
Chain: C: PDB Molecule:calcium uniporter protein, mitochondrial;
PDBTitle: human mcu-emre complex, dimer of channel
45c3tnuB_
not modelled 49.2 18
PDB header:cytosolic protein
Chain: B: PDB Molecule:keratin, type ii cytoskeletal 5;
PDBTitle: heterocomplex of coil 2b domains of human intermediate filament2 proteins, keratin 5 (krt5) and keratin 14 (krt14)
46c5t4oJ_
not modelled 49.0 15
PDB header:hydrolase
Chain: J: PDB Molecule:atp synthase subunit b;
PDBTitle: autoinhibited e. coli atp synthase state 1
47c5ua4A_
not modelled 47.7 10
PDB header:apoptosis
Chain: A: PDB Molecule:5-hl;
PDBTitle: crystal structure of a179l:bid bh3 complex
48c6o7ua_
not modelled 47.1 10
PDB header:membrane protein
Chain: A: PDB Molecule:
PDBTitle: saccharomyces cerevisiae v-atpase stv1-vo
49c2kncB_
not modelled 46.9 36
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
50c4o7oB_
not modelled 46.6 22
PDB header:transferase
Chain: B: PDB Molecule:maltokinase;
PDBTitle: crystal structure of mycobacterium tuberculosis maltose kinase mak
51c1gk4A_
not modelled 45.6 13
PDB header:vimentin
Chain: A: PDB Molecule:vimentin;
PDBTitle: human vimentin coil 2b fragment (cys2)
52c3j3bh_
not modelled 44.9 25
PDB header:ribosome
Chain: H: PDB Molecule:60s ribosomal protein l9;
PDBTitle: structure of the human 60s ribosomal proteins
53c3j39h_
not modelled 44.8 25
PDB header:ribosome
Chain: H: PDB Molecule:60s ribosomal protein l9;
PDBTitle: structure of the d. melanogaster 60s ribosomal proteins
54c2lw9A_
not modelled 44.6 22
PDB header:motor protein
Chain: A: PDB Molecule:unconventionnal myosin-x;
PDBTitle: nmr solution structure of myo10 anti-cc
55c2w8aC_
not modelled 44.6 14
PDB header:membrane protein
Chain: C: PDB Molecule:glycine betaine transporter betp;
PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate
56c5voxb_
not modelled 43.8 8
PDB header:hydrolase
Chain: B: PDB Molecule:v-type proton atpase subunit b;
PDBTitle: yeast v-atpase in complex with legionella pneumophila effector sidk2 (rotational state 1)
57c5hzpA_
not modelled 43.5 37
PDB header:immune system
Chain: A: PDB Molecule:m protein, serotype 49;
PDBTitle: structure of human c4b-binding protein alpha chain ccp domains 1 and 22 in complex with the hypervariable region of group a streptococcus m493 protein.
58c2jlnA_
not modelled 43.3 17
PDB header:membrane protein
Chain: A: PDB Molecule:mhp1;
PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
59c1kqfB_
not modelled 43.3 17
PDB header:oxidoreductase
Chain: B: PDB Molecule:formate dehydrogenase, nitrate-inducible, iron-sulfur
PDBTitle: formate dehydrogenase n from e. coli
60c2ks1B_
not modelled 42.9 32
PDB header:transferase
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
61c5ideA_
not modelled 42.8 15
PDB header:signaling protein
Chain: A: PDB Molecule:glutamate receptor 2;
PDBTitle: cryo-em structure of glua2/3 ampa receptor heterotetramer (model i)
62c3kg2A_
not modelled 41.5 6
PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:glutamate receptor 2;
PDBTitle: ampa subtype ionotropic glutamate receptor in complex with competitive2 antagonist zk 200775
63c3kl4B_
not modelled 41.5 29
PDB header:hydrolase
Chain: B: PDB Molecule:signal peptide of yeast dipeptidyl aminopeptidase b;
PDBTitle: recognition of a signal peptide by the signal recognition particle
64c5tzpA_
not modelled 41.3 18
PDB header:apoptosis
Chain: A: PDB Molecule:bcl-2-like protein fpv039;
PDBTitle: crystal structure of fpv039:bik bh3 complex
65c6mjpF_
not modelled 40.9 24
PDB header:lipid transport
Chain: F: PDB Molecule:fig000988: predicted permease;
PDBTitle: lptb(e163q)fgc from vibrio cholerae
66c5x5yF_
not modelled 40.3 22
PDB header:membrane protein
Chain: F: PDB Molecule:uncharacterized protein;
PDBTitle: a membrane protein complex
67c3lrcC_
not modelled 39.6 9
PDB header:transport protein
Chain: C: PDB Molecule:arginine/agmatine antiporter;
PDBTitle: structure of e. coli adic (p1)
68c4wd7A_
not modelled 39.0 15
PDB header:membrane protein
Chain: A: PDB Molecule:bestrophin domain protein;
PDBTitle: crystal structure of a bacterial bestrophin homolog from klebsiella2 pneumoniae by zn-sad phasing
69c3r4hD_
not modelled 38.5 42
PDB header:de novo protein
Chain: D: PDB Molecule:coiled coil helix cc-tet-phi22;
PDBTitle: crystal structure of the 4-helix coiled coil cc-tet-phi22
70c2uuiA_
not modelled 38.5 23
PDB header:lyase
Chain: A: PDB Molecule:leukotriene c4 synthase;
PDBTitle: crystal structure of human leukotriene c4 synthase
71c6f0kA_
not modelled 38.1 13
PDB header:membrane protein
Chain: A: PDB Molecule:cytochrome c family protein;
PDBTitle: alternative complex iii
72c2yevB_
not modelled 37.9 16
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c oxidase subunit 2;
PDBTitle: structure of caa3-type cytochrome oxidase
73c6owsB_
not modelled 37.8 17
PDB header:membrane protein
Chain: B: PDB Molecule:efflux pump membrane transporter;
PDBTitle: cryo-em structure of an acinetobacter baumannii multidrug efflux pump
74c3r4aA_
not modelled 37.5 42
PDB header:de novo protein
Chain: A: PDB Molecule:coiled coil helix cc-tet;
PDBTitle: crystal structure of the 4-helix coiled coil cc-tet
75c5v8kA_
not modelled 37.0 27
PDB header:photosynthesis
Chain: A: PDB Molecule:p800 reaction center core protein;
PDBTitle: homodimeric reaction center of h. modesticaldum
76c6cfwA_
not modelled 36.9 11
PDB header:membrane protein
Chain: A: PDB Molecule:monovalent cation/h+ antiporter subunit e;
PDBTitle: cryoem structure of a respiratory membrane-bound hydrogenase
77c3r4aB_
not modelled 36.9 42
PDB header:de novo protein
Chain: B: PDB Molecule:coiled coil helix cc-tet;
PDBTitle: crystal structure of the 4-helix coiled coil cc-tet
78c3j9tZ_
not modelled 36.7 15
PDB header:hydrolase
Chain: Z: PDB Molecule:v-type proton atpase subunit c;
PDBTitle: yeast v-atpase state 1
79c3r4hB_
not modelled 36.6 42
PDB header:de novo protein
Chain: B: PDB Molecule:coiled coil helix cc-tet-phi22;
PDBTitle: crystal structure of the 4-helix coiled coil cc-tet-phi22
80c3r4hC_
not modelled 36.6 42
PDB header:de novo protein
Chain: C: PDB Molecule:coiled coil helix cc-tet-phi22;
PDBTitle: crystal structure of the 4-helix coiled coil cc-tet-phi22
81c3r4hA_
not modelled 36.4 42
PDB header:de novo protein
Chain: A: PDB Molecule:coiled coil helix cc-tet-phi22;
PDBTitle: crystal structure of the 4-helix coiled coil cc-tet-phi22
82c5lq3F_
not modelled 36.4 9
PDB header:transport protein
Chain: F: PDB Molecule:cmeb;
PDBTitle: structures and transport dynamics of the campylobacter jejuni2 multidrug efflux pump cmeb
83c2mc7A_
not modelled 36.3 53
PDB header:membrane protein
Chain: A: PDB Molecule:regulatory peptide;
PDBTitle: structure of salmonella mgtr
84c5lc5c_
not modelled 36.2 25
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh dehydrogenase [ubiquinone] iron-sulfur protein 3,
PDBTitle: structure of mammalian respiratory complex i, class2
85c5wdaL_
not modelled 36.1 15
PDB header:protein transport
Chain: L: PDB Molecule:general secretion pathway protein g;
PDBTitle: structure of the pulg pseudopilus
86c1s1iX_
not modelled 36.1 36
PDB header:ribosome
Chain: X: PDB Molecule:60s ribosomal protein l35;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
87c4a1eU_
not modelled 35.9 27
PDB header:ribosome
Chain: U: PDB Molecule:rpl35;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna, 5.8s rrna3 and proteins of molecule 1
88c3iynQ_
not modelled 35.2 23
PDB header:virus
Chain: Q: PDB Molecule:hexon-associated protein;
PDBTitle: 3.6-angstrom cryoem structure of human adenovirus type 5
89c4p6vC_
not modelled 35.2 14
PDB header:oxidoreductase
Chain: C: PDB Molecule:na(+)-translocating nadh-quinone reductase subunit c;
PDBTitle: crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
90c3rkoM_
not modelled 35.1 18
PDB header:oxidoreductase
Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m;
PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution
91c4zryA_
not modelled 35.1 15
PDB header:protein fibril
Chain: A: PDB Molecule:keratin, type i cytoskeletal 10;
PDBTitle: crystal structure of the heterocomplex between coil 2b domains of2 human intermediate filament proteins keratin 1 (krt1) and keratin 103 (krt10)
92c2lw1A_
not modelled 34.8 19
PDB header:dna binding protein
Chain: A: PDB Molecule:abc transporter atp-binding protein uup;
PDBTitle: the c-terminal domain of the uup protein is a dna-binding coiled coil2 motif
93c4hg6A_
not modelled 34.2 11
PDB header:transferase
Chain: A: PDB Molecule:cellulose synthase subunit a;
PDBTitle: structure of a cellulose synthase - cellulose translocation2 intermediate
94c6dnfA_
not modelled 34.0 18
PDB header:membrane protein
Chain: A: PDB Molecule:mitochondrial calcium uniporter mcu;
PDBTitle: cryo-em structure of the mitochondrial calcium uniporter mcu from the2 fungus cyphellophora europaea
95c4hg6B_
not modelled 33.9 24
PDB header:transferase
Chain: B: PDB Molecule:cellulose synthase subunit b;
PDBTitle: structure of a cellulose synthase - cellulose translocation2 intermediate
96c6gcs6_
not modelled 33.9 22
PDB header:oxidoreductase
Chain: 6: PDB Molecule:nd6 subunit (nu6m);
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
97c5u5aA_
not modelled 33.5 50
PDB header:de novo protein
Chain: A: PDB Molecule:designed dimeric coiled coil peptide with two terpyridine
PDBTitle: coiled coil peptide metal coordination framework: dimer fold
98c5u59A_
not modelled 33.5 50
PDB header:de novo protein
Chain: A: PDB Molecule:designed dimeric coiled coil peptide with two terpyridine
PDBTitle: coiled coil peptide metal coordination framework: dimer fold grown2 with citrate
99c2wt7B_
not modelled 33.2 19
PDB header:transcription
Chain: B: PDB Molecule:transcription factor mafb;
PDBTitle: crystal structure of the bzip heterodimeric complex mafb:cfos bound to2 dna
100c3hd7A_
not modelled 32.9 8
PDB header:exocytosis
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
101c4pe5A_
not modelled 32.6 20
PDB header:transport protein
Chain: A: PDB Molecule:glutamate receptor ionotropic, nmda 1;
PDBTitle: crystal structure of glun1a/glun2b nmda receptor ion channel
102c1xrdA_
not modelled 32.1 35
PDB header:membrane protein
Chain: A: PDB Molecule:light-harvesting protein b-880, alpha chain;
PDBTitle: light-harvesting complex 1 alfa subunit from wild-type2 rhodospirillum rubrum
103d1xrda1
not modelled 32.1 35
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
104c3movB_
not modelled 32.0 20
PDB header:structural protein
Chain: B: PDB Molecule:lamin-b1;
PDBTitle: crystal structure of human lamin-b1 coil 2 segment
105c4rhpB_
not modelled 31.9 10
PDB header:biosynthetic protein
Chain: B: PDB Molecule:ubiquinone biosynthesis protein coq9, mitochondrial;
PDBTitle: crystal structure of human coq9 in complex with a phospholipid,2 northeast structural genomics consortium target hr5043
106c4cfiA_
not modelled 31.3 19
PDB header:structural protein
Chain: A: PDB Molecule:flagellin;
PDBTitle: 3d structure of flic from burkholderia pseudomallei
107c6co7C_
not modelled 31.3 16
PDB header:membrane protein
Chain: C: PDB Molecule:predicted protein;
PDBTitle: structure of the nvtrpm2 channel in complex with ca2+
108c6fkip_
not modelled 31.2 11
PDB header:membrane protein
Chain: P: PDB Molecule:atp synthase subunit c, chloroplastic;
PDBTitle: chloroplast f1fo conformation 3
109c2ifmA_
not modelled 31.2 24
PDB header:virus
Chain: A: PDB Molecule:pf1 filamentous bacteriophage;
PDBTitle: pf1 filamentous bacteriophage: refinement of a molecular2 model by simulated annealing using 3.3 angstroms3 resolution x-ray fibre diffraction data
110c1ql1A_
not modelled 31.2 24
PDB header:virus
Chain: A: PDB Molecule:pf1 bacteriophage coat protein b;
PDBTitle: inovirus (filamentous bacteriophage) strain pf1 major coat2 protein assembly
111c5garX_
not modelled 31.2 14
PDB header:hydrolase
Chain: X: PDB Molecule:vacuolar type atp synthase subunit;
PDBTitle: thermus thermophilus v/a-atpase, conformation 1
112c3r4hE_
not modelled 31.2 47
PDB header:de novo protein
Chain: E: PDB Molecule:coiled coil helix cc-tet-phi22;
PDBTitle: crystal structure of the 4-helix coiled coil cc-tet-phi22
113c6csxA_
not modelled 31.1 8
PDB header:transport protein
Chain: A: PDB Molecule:multidrug efflux pump subunit acrb;
PDBTitle: single particles cryo-em structure of acrb d407a associated with lipid2 bilayer at 3.0 angstrom
114c3jcuj_
not modelled 31.1 5
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
115c4gx2B_
not modelled 30.9 12
PDB header:transport protein
Chain: B: PDB Molecule:trka domain protein;
PDBTitle: gsuk channel bound to nad
116c3j21W_
not modelled 30.6 23
PDB header:ribosome
Chain: W: PDB Molecule:50s ribosomal protein l29p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
117c4e17B_
not modelled 30.6 25
PDB header:cell adhesion
Chain: B: PDB Molecule:catenin alpha-1;
PDBTitle: alpha-e-catenin is an autoinhibited molecule that co-activates2 vinculin
118c6btmA_
not modelled 30.4 24
PDB header:membrane protein
Chain: A: PDB Molecule:alternative complex iii subunit a;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
119c3r4hF_
not modelled 29.8 47
PDB header:de novo protein
Chain: F: PDB Molecule:coiled coil helix cc-tet-phi22;
PDBTitle: crystal structure of the 4-helix coiled coil cc-tet-phi22
120c6gv9K_
not modelled 29.5 13
PDB header:protein fibril
Chain: K: PDB Molecule:prepilin peptidase-dependent protein d;
PDBTitle: structure of the type iv pilus from enterohemorrhagic escherichia coli2 (ehec)

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below