Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3605c_(-)_4047884_4048360
DateFri Aug 9 18:20:29 BST 2019
Unique Job IDcfd53fa7cfa7c92a
SequenceMGPTRKRDLT ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:18.418 Y:19.036 Z:14.426
Model (left) based on template d2o3ga1
Top template information
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
Confidence and coverage
Confidence: 29.0% Coverage: 11%
17 residues ( 11% of your sequence) have been modelled with 29.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2o3ga1



29.0 24
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
2c3rvdM_



26.0 31
PDB header:oxidoreductase/protein binding
Chain: M: PDB Molecule:photosyntetic glyceraldehyde-3-phosphate dehydrogenase (a4
PDBTitle: crystal structure of the binary complex, obtained by soaking, of2 photosyntetic a4 glyceraldehyde 3-phosphate dehydrogenase (gapdh)3 with cp12-2, both from arabidopsis thaliana.
3c3rvdJ_



24.5 31
PDB header:oxidoreductase/protein binding
Chain: J: PDB Molecule:photosyntetic glyceraldehyde-3-phosphate dehydrogenase (a4
PDBTitle: crystal structure of the binary complex, obtained by soaking, of2 photosyntetic a4 glyceraldehyde 3-phosphate dehydrogenase (gapdh)3 with cp12-2, both from arabidopsis thaliana.
4c3qv1G_



24.5 31
PDB header:oxidoreductase/protein binding
Chain: G: PDB Molecule:cp12 protein;
PDBTitle: crystal structure of the binary complex of photosyntetic a42 glyceraldehyde 3-phosphate dehydrogenase (gapdh) with cp12-2, both3 from arabidopsis thaliana.
5c3rvdK_



24.5 31
PDB header:oxidoreductase/protein binding
Chain: K: PDB Molecule:photosyntetic glyceraldehyde-3-phosphate dehydrogenase (a4
PDBTitle: crystal structure of the binary complex, obtained by soaking, of2 photosyntetic a4 glyceraldehyde 3-phosphate dehydrogenase (gapdh)3 with cp12-2, both from arabidopsis thaliana.
6d3deda1



22.9 18
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
7c2lj9A_



22.6 31
PDB header:protein binding
Chain: A: PDB Molecule:cp12 domain-containing protein 2;
PDBTitle: partial 3d structure of the c-terminal part of the free arabidopsis2 thaliana cp12-2 in its oxidized form
8c3rvdI_



22.3 31
PDB header:oxidoreductase/protein binding
Chain: I: PDB Molecule:photosyntetic glyceraldehyde-3-phosphate dehydrogenase (a4
PDBTitle: crystal structure of the binary complex, obtained by soaking, of2 photosyntetic a4 glyceraldehyde 3-phosphate dehydrogenase (gapdh)3 with cp12-2, both from arabidopsis thaliana.
9d2oaia1



22.0 12
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
10d2r2za1



21.6 12
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
11c3dedB_



20.9 18
PDB header:membrane protein
Chain: B: PDB Molecule:probable hemolysin;
PDBTitle: c-terminal domain of probable hemolysin from chromobacterium violaceum
12c2kncA_



20.2 14
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
13c2kv5A_



18.8 14
PDB header:toxin
Chain: A: PDB Molecule:putative uncharacterized protein rnai;
PDBTitle: solution structure of the par toxin fst in dpc micelles
14d2plsa1



18.4 12
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
15c3llbA_



18.3 18
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: the crystal structure of the protein pa3983 with unknown2 function from pseudomonas aeruginosa pao1
16d2p3ha1



18.1 12
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
17d2rk5a1



17.9 18
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
18c3rvdN_



17.0 31
PDB header:oxidoreductase/protein binding
Chain: N: PDB Molecule:photosyntetic glyceraldehyde-3-phosphate dehydrogenase (a4
PDBTitle: crystal structure of the binary complex, obtained by soaking, of2 photosyntetic a4 glyceraldehyde 3-phosphate dehydrogenase (gapdh)3 with cp12-2, both from arabidopsis thaliana.
19c3qv1I_



17.0 31
PDB header:oxidoreductase/protein binding
Chain: I: PDB Molecule:cp12 protein;
PDBTitle: crystal structure of the binary complex of photosyntetic a42 glyceraldehyde 3-phosphate dehydrogenase (gapdh) with cp12-2, both3 from arabidopsis thaliana.
20c3qv1H_



16.9 31
PDB header:oxidoreductase/protein binding
Chain: H: PDB Molecule:cp12 protein;
PDBTitle: crystal structure of the binary complex of photosyntetic a42 glyceraldehyde 3-phosphate dehydrogenase (gapdh) with cp12-2, both3 from arabidopsis thaliana.
21d2o1ra1



not modelled 14.7 29
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
22c6a2uA_



not modelled 14.6 18
PDB header:signaling protein/oxidoreductase
Chain: A: PDB Molecule:twin-arginine translocation pathway signal;
PDBTitle: crystal structure of gamma-alpha subunit complex from burkholderia2 cepacia fad glucose dehydrogenase
23d2p13a1



not modelled 12.2 12
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
24c2l5bA_



not modelled 10.1 43
PDB header:apoptosis
Chain: A: PDB Molecule:activator of apoptosis harakiri;
PDBTitle: solution structure of the transmembrane domain of bcl-2 member2 harakiri in micelles
25d2plia1



not modelled 9.8 18
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
26c1jcaC_



not modelled 8.2 43
PDB header:hormone/growth factor
Chain: C: PDB Molecule:insulin a;
PDBTitle: non-standard design of unstable insulin analogues with enhanced2 activity
27c1jcaA_



not modelled 8.2 43
PDB header:hormone/growth factor
Chain: A: PDB Molecule:insulin a;
PDBTitle: non-standard design of unstable insulin analogues with enhanced2 activity
28c4hkrA_



not modelled 8.1 46
PDB header:transport protein
Chain: A: PDB Molecule:calcium release-activated calcium channel protein 1;
PDBTitle: calcium release-activated calcium (crac) channel orai
29d2nqwa1



not modelled 8.0 18
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
30c2uurA_



not modelled 7.6 29
PDB header:structural protein
Chain: A: PDB Molecule:collagen alpha-1(ix) chain;
PDBTitle: n-terminal nc4 domain of collagen ix
31d1ppjw_



not modelled 6.7 20
Fold:Single transmembrane helix
Superfamily:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
32c6ghrF_



not modelled 6.6 31
PDB header:photosynthesis
Chain: F: PDB Molecule:cp12 polypeptide;
PDBTitle: cyanobacterial gapdh with full-length cp12
33d1ufaa1



not modelled 6.6 33
Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Families 57/38 glycoside transferase middle domain
Family:AmyC C-terminal domain-like
34c1xw7C_



not modelled 6.6 43
PDB header:hormone/growth factor
Chain: C: PDB Molecule:insulin;
PDBTitle: diabetes-associated mutations in human insulin: crystal structure and2 photo-cross-linking studies of a-chain variant insulin wakayama
35c6btmA_



not modelled 6.5 9
PDB header:membrane protein
Chain: A: PDB Molecule:alternative complex iii subunit a;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
36c4i0oA_



not modelled 6.5 9
PDB header:structural protein
Chain: A: PDB Molecule:protein elys;
PDBTitle: nucleoporin elys (aa1-494), mus musculus
37c3rvdL_



not modelled 6.4 31
PDB header:oxidoreductase/protein binding
Chain: L: PDB Molecule:photosyntetic glyceraldehyde-3-phosphate dehydrogenase (a4
PDBTitle: crystal structure of the binary complex, obtained by soaking, of2 photosyntetic a4 glyceraldehyde 3-phosphate dehydrogenase (gapdh)3 with cp12-2, both from arabidopsis thaliana.
38c1xw7A_



not modelled 6.4 43
PDB header:hormone/growth factor
Chain: A: PDB Molecule:insulin;
PDBTitle: diabetes-associated mutations in human insulin: crystal structure and2 photo-cross-linking studies of a-chain variant insulin wakayama
39c2n2sA_



not modelled 6.3 33
PDB header:signaling protein
Chain: A: PDB Molecule:pheromone ep-1;
PDBTitle: nmr solution structure of the pheromone ep-1 from euplotes petzi
40c2l6sA_



not modelled 6.1 33
PDB header:antiviral protein
Chain: A: PDB Molecule:vir-576;
PDBTitle: efficacy of an hiv-1 entry inhibitor targeting the gp41 fusion peptide
41c2l6tA_



not modelled 6.1 33
PDB header:antiviral protein
Chain: A: PDB Molecule:vir-576;
PDBTitle: efficacy of an hiv-1 entry inhibitor targeting the gp41 fusion peptide
42c2mtpB_



not modelled 6.0 20
PDB header:protein binding/cell adhesion
Chain: B: PDB Molecule:integrin alpha-iib;
PDBTitle: the structure of filamin repeat 21 bound to integrin
43d3cx5i1



not modelled 6.0 17
Fold:Single transmembrane helix
Superfamily:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
44c1j73A_



not modelled 5.9 25
PDB header:hormone/growth factor
Chain: A: PDB Molecule:insulin a;
PDBTitle: crystal structure of an unstable insulin analog with native activity.
45c1j73C_



not modelled 5.9 25
PDB header:hormone/growth factor
Chain: C: PDB Molecule:insulin a;
PDBTitle: crystal structure of an unstable insulin analog with native activity.
46c1m8oA_



not modelled 5.8 20
PDB header:membrane protein
Chain: A: PDB Molecule:platelet integrin alfaiib subunit: cytoplasmic
PDBTitle: platelet integrin alfaiib-beta3 cytoplasmic domain
47c1s4wA_



not modelled 5.8 20
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: nmr structure of the cytoplasmic domain of integrin aiib in2 dpc micelles
48c1dpkA_



not modelled 5.8 20
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib subunit;
PDBTitle: solution structure of the cytoplasmic domain of the2 integrin alpha-iib subunit
49c2mn8A_



not modelled 5.5 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:maculatin g15;
PDBTitle: nmr structure of a peptoid analogue of maculatin g15 containing cis-2 nleu at position 13
50c2mn9A_



not modelled 5.5 50
PDB header:antimicrobial protein
Chain: A: PDB Molecule:maculatin g15;
PDBTitle: peptoid analogue of maculatin g15 - peptoid trans-nleu at position 13
51d2p4pa1



not modelled 5.3 12
Fold:FAD-binding/transporter-associated domain-like
Superfamily:FAD-binding/transporter-associated domain-like
Family:CorC/HlyC domain-like
52c2z9fC_



not modelled 5.2 11
PDB header:biosynthetic protein
Chain: C: PDB Molecule:cellulose synthase operon protein d;
PDBTitle: crystal structure of axcesd protein from acetobacter xylinum

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below