Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3609c_(folE)_4050156_4050764
DateFri Aug 9 18:20:29 BST 2019
Unique Job IDa31d887668ff2b8b
SequenceMSQLDSRSAS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:58.184 Y:50.475 Z:35.335
Model (left) based on template c4uqfB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:gtp cyclohydrolase 1;
PDBTitle: crystal structure of listeria monocytogenes gtp cyclohydrolase i
Confidence and coverage
Confidence:100.0% Coverage: 91%
184 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4uqfB_
100.0 57
PDB header:hydrolase
Chain: B: PDB Molecule:gtp cyclohydrolase 1;
PDBTitle: crystal structure of listeria monocytogenes gtp cyclohydrolase i
2d1wpla_
100.0 48
Fold:T-fold
Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like
Family:GTP cyclohydrolase I
3d1wura1
100.0 48
Fold:T-fold
Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like
Family:GTP cyclohydrolase I
4c1wm9D_
100.0 48
PDB header:hydrolase
Chain: D: PDB Molecule:gtp cyclohydrolase i;
PDBTitle: structure of gtp cyclohydrolase i from thermus thermophilus hb8
5c1is7F_
100.0 48
PDB header:hydrolase/protein binding
Chain: F: PDB Molecule:gtp cyclohydrolase i;
PDBTitle: crystal structure of rat gtpchi/gfrp stimulatory complex
6d1a8ra_
100.0 37
Fold:T-fold
Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like
Family:GTP cyclohydrolase I
7c5jyxB_
100.0 22
PDB header:transferase
Chain: B: PDB Molecule:archeaosine synthase quef-like;
PDBTitle: crystal structure of the covalent thioimide intermediate of the2 archaeosine synthase quef-like
8c4f8bE_
99.8 19
PDB header:oxidoreductase
Chain: E: PDB Molecule:nadph-dependent 7-cyano-7-deazaguanine reductase;
PDBTitle: crystal structure of the covalent thioimide intermediate of unimodular2 nitrile reductase quef
9c3bp1A_
91.4 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:nadph-dependent 7-cyano-7-deazaguanine reductase;
PDBTitle: crystal structure of putative 7-cyano-7-deazaguanine reductase quef2 from vibrio cholerae o1 biovar eltor
10c3pg6D_
54.6 19
PDB header:ligase
Chain: D: PDB Molecule:e3 ubiquitin-protein ligase dtx3l;
PDBTitle: the carboxyl terminal domain of human deltex 3-like
11c6em34_
28.7 24
PDB header:ribosome
Chain: 4: PDB Molecule:ribosomal rna-processing protein 1;
PDBTitle: state a architectural model (nsa1-tap flag-ytm1) - visualizing the2 assembly pathway of nucleolar pre-60s ribosomes
12d1oz9a_
27.6 15
Fold:Zincin-like
Superfamily:Metalloproteases ("zincins"), catalytic domain
Family:Predicted metal-dependent hydrolase
13d1o6ca_
27.0 12
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
14c3iraA_
26.8 14
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved protein;
PDBTitle: the crystal structure of one domain of the conserved protein from2 methanosarcina mazei go1
15d1dpta_
25.5 20
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
16c2xczA_
24.5 13
PDB header:immune system
Chain: A: PDB Molecule:possible atls1-like light-inducible protein;
PDBTitle: crystal structure of macrophage migration inhibitory factor homologue2 from prochlorococcus marinus
17c3ugsB_
23.9 19
PDB header:transferase
Chain: B: PDB Molecule:undecaprenyl pyrophosphate synthase;
PDBTitle: crystal structure of a probable undecaprenyl diphosphate synthase2 (upps) from campylobacter jejuni
18d1uiza_
23.8 17
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
19c4g6cA_
22.6 16
PDB header:hydrolase
Chain: A: PDB Molecule:beta-hexosaminidase 1;
PDBTitle: crystal structure of beta-hexosaminidase 1 from burkholderia2 cenocepacia j2315
20c2d2rA_
21.9 32
PDB header:transferase
Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase;
PDBTitle: crystal structure of helicobacter pylori undecaprenyl pyrophosphate2 synthase
21c5l0uA_
not modelled 21.7 17
PDB header:transferase
Chain: A: PDB Molecule:protein o-glucosyltransferase 1;
PDBTitle: human poglut1 in complex with egf(+) and udp-phosphono-glucose
22c5z3gX_
not modelled 19.4 25
PDB header:ribosome
Chain: X: PDB Molecule:ribosomal rna-processing protein 1;
PDBTitle: cryo-em structure of a nucleolar pre-60s ribosome (rpf1-tap)
23c5enzA_
not modelled 18.9 16
PDB header:isomerase
Chain: A: PDB Molecule:udp-glcnac 2-epimerase;
PDBTitle: s. aureus mnaa-udp co-structure
24d2veaa1
not modelled 18.5 7
Fold:Profilin-like
Superfamily:GAF domain-like
Family:GAF domain
25c1jp3A_
not modelled 18.0 48
PDB header:transferase
Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase;
PDBTitle: structure of e.coli undecaprenyl pyrophosphate synthase
26c2l9vA_
not modelled 17.9 19
PDB header:rna binding protein
Chain: A: PDB Molecule:pre-mrna-processing factor 40 homolog a;
PDBTitle: nmr structure of the ff domain l24a mutant's folding transition state
27c6emfA_
not modelled 17.0 25
PDB header:ribosome
Chain: A: PDB Molecule:g0s4m2;
PDBTitle: crystal structure of rrp1 from chaetomium thermophilum in space group2 c2
28d1vqoj1
not modelled 16.8 26
Fold:Ribosomal protein L13
Superfamily:Ribosomal protein L13
Family:Ribosomal protein L13
29c3zf7Y_
not modelled 16.6 13
PDB header:ribosome
Chain: Y: PDB Molecule:60s ribosomal protein l24, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
30c5xk9F_
not modelled 15.2 24
PDB header:transferase
Chain: F: PDB Molecule:undecaprenyl diphosphate synthase;
PDBTitle: crystal structure of isosesquilavandulyl diphosphate synthase from2 streptomyces sp. strain cnh-189 in complex with gspp and dmapp
31c5gukA_
not modelled 15.1 28
PDB header:biosynthetic protein
Chain: A: PDB Molecule:cyclolavandulyl diphosphate synthase;
PDBTitle: crystal structure of apo form of cyclolavandulyl diphosphate synthase2 (clds) from streptomyces sp. cl190
32d1f75a_
not modelled 15.0 20
Fold:Undecaprenyl diphosphate synthase
Superfamily:Undecaprenyl diphosphate synthase
Family:Undecaprenyl diphosphate synthase
33d2nn6f2
not modelled 15.0 29
Fold:Ribonuclease PH domain 2-like
Superfamily:Ribonuclease PH domain 2-like
Family:Ribonuclease PH domain 2-like
34c6nuwF_
not modelled 14.8 22
PDB header:cell cycle
Chain: F: PDB Molecule:inner kinetochore subunit okp1;
PDBTitle: yeast ctf19 complex
35d1j09a2
not modelled 13.8 35
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
36d1ueha_
not modelled 13.8 48
Fold:Undecaprenyl diphosphate synthase
Superfamily:Undecaprenyl diphosphate synthase
Family:Undecaprenyl diphosphate synthase
37c5hxpA_
not modelled 12.7 36
PDB header:transferase
Chain: A: PDB Molecule:(2z,6z)-farnesyl diphosphate synthase, chloroplastic;
PDBTitle: crystal structure of z,z-farnesyl diphosphate synthase (d71m, e75a and2 h103y mutants) complexed with ipp
38c5f86A_
not modelled 12.3 12
PDB header:transferase/hydrolase
Chain: A: PDB Molecule:o-glucosyltransferase rumi;
PDBTitle: crystal structure of drosophila poglut1 (rumi) complexed with its2 substrate protein (egf repeat)
39c2o90A_
not modelled 12.3 18
PDB header:lyase
Chain: A: PDB Molecule:dihydroneopterin aldolase;
PDBTitle: atomic resolution crystal structure of e.coli dihydroneopterin2 aldolase in complex with neopterin
40c5hg1A_
not modelled 12.0 16
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:hexokinase-2;
PDBTitle: crystal structure of human hexokinase 2 with cmpd 1, a c-2-substituted2 glucosamine
41c3f6nA_
not modelled 11.9 21
PDB header:viral protein, dna-binding protein
Chain: A: PDB Molecule:virion-associated protein;
PDBTitle: crystal structure of the virion-associated protein p3 from2 caulimovirus
42c3k4tB_
not modelled 11.6 21
PDB header:viral protein, dna-binding protein
Chain: B: PDB Molecule:virion-associated protein;
PDBTitle: crystal structure of the virion-associated protein p3 from2 caulimovirus
43c5ljiA_
not modelled 11.6 38
PDB header:oxidoreductase
Chain: A: PDB Molecule:flavodoxin;
PDBTitle: streptococcus pneumonia tigr4 flavodoxin: structural and biophysical2 characterization of a novel drug target
44c2lmkA_
not modelled 11.5 37
PDB header:signaling protein
Chain: A: PDB Molecule:exocrine gland-secreting peptide 1;
PDBTitle: solution structure of mouse pheromone esp1
45c5bzaA_
not modelled 11.4 14
PDB header:hydrolase
Chain: A: PDB Molecule:beta-n-acetylhexosaminidase;
PDBTitle: crystal structure of cbsa from thermotoga neapolitana
46c3aiiA_
not modelled 11.4 31
PDB header:ligase
Chain: A: PDB Molecule:glutamyl-trna synthetase;
PDBTitle: archaeal non-discriminating glutamyl-trna synthetase from2 methanothermobacter thermautotrophicus
47d1vhxa_
not modelled 11.3 27
Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Putative Holliday junction resolvase RuvX
48c3tevA_
not modelled 11.2 19
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hyrolase, family 3;
PDBTitle: the crystal structure of glycosyl hydrolase from deinococcus2 radiodurans r1
49c5odcD_
not modelled 11.1 18
PDB header:oxidoreductase
Chain: D: PDB Molecule:methyl-viologen reducing hydrogenase subunit d;
PDBTitle: heterodisulfide reductase / [nife]-hydrogenase complex from2 methanothermococcus thermolithotrophicus at 2.3 a resolution
50d3eeqa1
not modelled 11.0 8
Fold:CobE/GbiG C-terminal domain-like
Superfamily:CobE/GbiG C-terminal domain-like
Family:CobE/GbiG C-terminal domain-like
51c5hc7A_
not modelled 10.9 28
PDB header:transferase/transferase inhibitor
Chain: A: PDB Molecule:prenyltransference for protein;
PDBTitle: crystal structure of lavandulyl diphosphate synthase from lavandula x2 intermedia in complex with s-thiolo-isopentenyldiphosphate
52c3femB_
not modelled 10.8 32
PDB header:biosynthetic protein, transferase
Chain: B: PDB Molecule:pyridoxine biosynthesis protein snz1;
PDBTitle: structure of the synthase subunit pdx1.1 (snz1) of plp synthase from2 saccharomyces cerevisiae
53d1b9la_
not modelled 10.7 22
Fold:T-fold
Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like
Family:DHN aldolase/epimerase
54c4m1aB_
not modelled 10.6 10
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a domain of unknown function (duf1904) from2 sebaldella termitidis atcc 33386
55c6c0dA_
not modelled 10.6 18
PDB header:hydrolase
Chain: A: PDB Molecule:amidase, hydantoinase/carbamoylase family;
PDBTitle: crystal structure of an amidase (hydantoinase/carbamoylase family)2 from burkholderia phymatum
56c3fwtA_
not modelled 10.5 10
PDB header:cytokine
Chain: A: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: crystal structure of leishmania major mif2
57c4v19N_
not modelled 10.0 20
PDB header:ribosome
Chain: N: PDB Molecule:mitoribosomal protein ul13m, mrpl13;
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 12 of 2
58c6fsiA_
not modelled 9.9 14
PDB header:electron transport
Chain: A: PDB Molecule:flavodoxin;
PDBTitle: crystal structure of semiquinone flavodoxin 1 from bacillus cereus2 (1.32 a resolution)
59d1u8va1
not modelled 9.9 19
Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:Medium chain acyl-CoA dehydrogenase-like, C-terminal domain
60c6gaqB_
not modelled 9.7 38
PDB header:electron transport
Chain: B: PDB Molecule:flavodoxin;
PDBTitle: crystal structure of oxidised flavodoxin 2 from bacillus cereus
61d1nzja_
not modelled 9.7 31
Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Nucleotidylyl transferase
Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain
62c5w6yB_
not modelled 9.7 12
PDB header:biosynthetic protein,isomerase
Chain: B: PDB Molecule:chorismate mutase;
PDBTitle: physcomitrella patens chorismate mutase
63c3lk6A_
not modelled 9.5 20
PDB header:hydrolase
Chain: A: PDB Molecule:lipoprotein ybbd;
PDBTitle: beta-n-hexosaminidase n318d mutant (ybbd_n318d) from bacillus subtilis
64c3sqlB_
not modelled 9.5 18
PDB header:hydrolase
Chain: B: PDB Molecule:glycosyl hydrolase family 3;
PDBTitle: crystal structure of glycoside hydrolase from synechococcus
65c6hcyA_
not modelled 9.2 14
PDB header:membrane protein
Chain: A: PDB Molecule:metalloreductase steap4;
PDBTitle: human steap4 bound to nadp, fad, heme and fe(iii)-nta.
66d1j3aa_
not modelled 9.2 26
Fold:Ribosomal protein L13
Superfamily:Ribosomal protein L13
Family:Ribosomal protein L13
67c2zbtB_
not modelled 9.2 32
PDB header:lyase
Chain: B: PDB Molecule:pyridoxal biosynthesis lyase pdxs;
PDBTitle: crystal structure of pyridoxine biosynthesis protein from thermus2 thermophilus hb8
68d1u9da_
not modelled 9.1 22
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:VC0714-like
69c2kduB_
not modelled 9.0 67
PDB header:metal binding protein/exocytosis
Chain: B: PDB Molecule:protein unc-13 homolog a;
PDBTitle: structural basis of the munc13-1/ca2+-calmodulin2 interaction: a novel 1-26 calmodulin binding motif with a3 bipartite binding mode
70c3gacD_
not modelled 8.9 16
PDB header:cytokine
Chain: D: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: structure of mif with hpp
71c3d5bN_
not modelled 8.8 29
PDB header:ribosome
Chain: N: PDB Molecule:50s ribosomal protein l13;
PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400.
72d1fima_
not modelled 8.8 17
Fold:Tautomerase/MIF
Superfamily:Tautomerase/MIF
Family:MIF-related
73c4firB_
not modelled 8.7 32
PDB header:lyase
Chain: B: PDB Molecule:pyridoxal biosynthesis lyase pdxs;
PDBTitle: crystal structure of pyridoxal biosynthesis lyase pdxs from pyrococcus
74d5csma_
not modelled 8.7 24
Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Allosteric chorismate mutase
75d1nbua_
not modelled 8.6 22
Fold:T-fold
Superfamily:Tetrahydrobiopterin biosynthesis enzymes-like
Family:DHN aldolase/epimerase
76c6gcs8_
not modelled 8.5 33
PDB header:oxidoreductase
Chain: 8: PDB Molecule:nb8m subunit;
PDBTitle: cryo-em structure of respiratory complex i from yarrowia lipolytica
77d1vmea1
not modelled 8.5 14
Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Flavodoxin-related
78c3b64A_
not modelled 8.5 15
PDB header:cytokine
Chain: A: PDB Molecule:macrophage migration inhibitory factor-like
PDBTitle: macrophage migration inhibitory factor (mif) from2 /leishmania major
79c5t58N_
not modelled 8.5 19
PDB header:cell cycle
Chain: N: PDB Molecule:klla0c15939p;
PDBTitle: structure of the mind complex shows a regulatory focus of yeast2 kinetochore assembly
80c2vfwB_
not modelled 8.5 22
PDB header:transferase
Chain: B: PDB Molecule:short-chain z-isoprenyl diphosphate synthetase;
PDBTitle: rv1086 native
81d1d8ja_
not modelled 8.4 21
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:The central core domain of TFIIE beta
82c4dh4A_
not modelled 8.3 16
PDB header:isomerase
Chain: A: PDB Molecule:mif;
PDBTitle: macrophage migration inhibitory factor toxoplasma gondii
83c2nv2U_
not modelled 8.2 34
PDB header:lyase/transferase
Chain: U: PDB Molecule:pyridoxal biosynthesis lyase pdxs;
PDBTitle: structure of the plp synthase complex pdx1/2 (yaad/e) from bacillus2 subtilis
84d1v29a_
not modelled 8.2 18
Fold:Nitrile hydratase alpha chain
Superfamily:Nitrile hydratase alpha chain
Family:Nitrile hydratase alpha chain
85d1cmca_
not modelled 8.2 21
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Met repressor, MetJ (MetR)
86c3ngvA_
not modelled 8.2 14
PDB header:transport protein
Chain: A: PDB Molecule:d7 protein;
PDBTitle: crystal structure of anst-d7l1
87d2o16a3
not modelled 8.1 15
Fold:CBS-domain pair
Superfamily:CBS-domain pair
Family:CBS-domain pair
88d1lfpa_
not modelled 8.1 36
Fold:YebC-like
Superfamily:YebC-like
Family:YebC-like
89c3wo8B_
not modelled 8.1 19
PDB header:hydrolase
Chain: B: PDB Molecule:beta-n-acetylglucosaminidase;
PDBTitle: crystal structure of the beta-n-acetylglucosaminidase from thermotoga2 maritima
90c3cf5G_
not modelled 7.9 23
PDB header:ribosome/antibiotic
Chain: G: PDB Molecule:50s ribosomal protein l13;
PDBTitle: thiopeptide antibiotic thiostrepton bound to the large ribosomal2 subunit of deinococcus radiodurans
91d2zjrg1
not modelled 7.9 23
Fold:Ribosomal protein L13
Superfamily:Ribosomal protein L13
Family:Ribosomal protein L13
92c4h3sA_
not modelled 7.7 11
PDB header:ligase
Chain: A: PDB Molecule:glutamine-trna ligase;
PDBTitle: the structure of glutaminyl-trna synthetase from saccharomyces2 cerevisiae
93c1zn1L_
not modelled 7.7 33
PDB header:biosynthetic/structural protein/rna
Chain: L: PDB Molecule:30s ribosomal protein s12;
PDBTitle: coordinates of rrf fitted into cryo-em map of the 70s post-termination2 complex
94c2k29A_
not modelled 7.6 24
PDB header:transcription
Chain: A: PDB Molecule:antitoxin relb;
PDBTitle: structure of the dbd domain of e. coli antitoxin relb
95d2d28c1
not modelled 7.6 15
Fold:Alpha-lytic protease prodomain-like
Superfamily:EspE N-terminal domain-like
Family:GSPII protein E N-terminal domain-like
96c2yzrB_
not modelled 7.6 37
PDB header:lyase
Chain: B: PDB Molecule:pyridoxal biosynthesis lyase pdxs;
PDBTitle: crystal structure of pyridoxine biosynthesis protein from2 methanocaldococcus jannaschii
97c4rn7A_
not modelled 7.5 30
PDB header:hydrolase
Chain: A: PDB Molecule:n-acetylmuramoyl-l-alanine amidase;
PDBTitle: the crystal structure of n-acetylmuramoyl-l-alanine amidase from2 clostridium difficile 630
98c3uv1B_
not modelled 7.5 22
PDB header:allergen
Chain: B: PDB Molecule:der f 7 allergen;
PDBTitle: crystal structure a major allergen from dust mite
99c3hlyA_
not modelled 7.4 24
PDB header:flavoprotein
Chain: A: PDB Molecule:flavodoxin-like domain;
PDBTitle: crystal structure of the flavodoxin-like domain from synechococcus sp2 q5mzp6_synp6 protein. northeast structural genomics consortium target3 snr135d.

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