Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3619c_(esxV)_4060163_4060447
DateFri Aug 9 18:20:30 BST 2019
Unique Job IDf04b0992da64458d
SequenceMTINYQFGDV ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.704 Y:38.599 Z:25.299
Model (left) based on template c4gzrA_
Top template information
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein 6;
PDBTitle: crystal structure of the mycobacterium tuberculosis h37rv esxop2 (rv2346c-rv2347c) complex in space group c2221
Confidence and coverage
Confidence:100.0% Coverage: 62%
58 residues ( 62% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
92 residues ( 98%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4gzrA_
100.0 88
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:esat-6-like protein 6;
PDBTitle: crystal structure of the mycobacterium tuberculosis h37rv esxop2 (rv2346c-rv2347c) complex in space group c2221
2c3ogiC_
100.0 86
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:putative esat-6-like protein 6;
PDBTitle: crystal structure of the mycobacterium tuberculosis h37rv esxop2 complex (rv2346c-rv2347c)
3d1wa8b1
95.9 21
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
4c2kg7B_
95.3 18
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
5d1wa8a1
83.5 14
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
6c4lwsB_
63.6 18
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
7c3zbhC_
63.2 18
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
8c3gvmA_
60.4 11
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
9c4lwsA_
57.2 13
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
10c2vs0B_
55.3 10
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
11c4iogD_
17.1 14
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
12c3nzlA_
15.8 33
PDB header:transcription
Chain: A: PDB Molecule:dna-binding protein satb1;
PDBTitle: crystal structure of the n-terminal domain of dna-binding protein2 satb1 from homo sapiens, northeast structural genomics consortium3 target hr4435b
13c4rc1B_
10.2 41
PDB header:unknown function
Chain: B: PDB Molecule:upf0264 protein mj1099;
PDBTitle: structure of the methanofuran/methanopterin biosynthetic enzyme mj10992 from methanocaldococcus jannaschii with prpp
14d2diia1
9.1 42
Fold:BSD domain-like
Superfamily:BSD domain-like
Family:BSD domain
15d2evra1
8.8 35
Fold:SH3-like barrel
Superfamily:Prokaryotic SH3-related domain
Family:Spr N-terminal domain-like
16d2bsqe1
8.5 20
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:Trafficking protein A-like
17d1njha_
8.5 50
Fold:Hypothetical protein YojF
Superfamily:Hypothetical protein YojF
Family:Hypothetical protein YojF
18c2diiA_
8.5 42
PDB header:transcription
Chain: A: PDB Molecule:tfiih basal transcription factor complex p62
PDBTitle: solution structure of the bsd domain of human tfiih basal2 transcription factor complex p62 subunit
19c5oqj1_
8.0 36
PDB header:transcription
Chain: 1: PDB Molecule:rna polymerase ii transcription factor b subunit 1;
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih
20c4rs7R_
7.3 60
PDB header:dna binding protein
Chain: R: PDB Molecule:parb-c;
PDBTitle: structure of pnob8 parb-c
21c5oqm1_
not modelled 6.5 36
PDB header:transcription
Chain: 1: PDB Molecule:general transcription and dna repair factor iih subunit
PDBTitle: structure of yeast transcription pre-initiation complex with tfiih and2 core mediator
22c2ds2A_
not modelled 6.3 83
PDB header:plant protein
Chain: A: PDB Molecule:sweet protein mabinlin-2 chain a;
PDBTitle: crystal structure of mabinlin ii
23c2ds2C_
not modelled 6.1 83
PDB header:plant protein
Chain: C: PDB Molecule:sweet protein mabinlin-2 chain a;
PDBTitle: crystal structure of mabinlin ii
24c3bc1F_
not modelled 5.9 53
PDB header:signaling protein/transport protein
Chain: F: PDB Molecule:synaptotagmin-like protein 2;
PDBTitle: crystal structure of the complex rab27a-slp2a
25c2dtuA_
not modelled 5.9 30
PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the beta hairpin loop deletion variant of rb692 gp43 in complex with dna containing an abasic site analog
26c3zh6B_
not modelled 5.6 60
PDB header:cell adhesion
Chain: B: PDB Molecule:protein e;
PDBTitle: the structure of haemophilus influenzae se_met form of protein e
27c6gym1_
not modelled 5.4 36
PDB header:transcription
Chain: 1: PDB Molecule:general transcription and dna repair factor iih subunit
PDBTitle: structure of a yeast closed complex with distorted dna (ccdist)
28c6hqaJ_
not modelled 5.3 45
PDB header:transcription
Chain: J: PDB Molecule:tfiid subunit (48 kda);
PDBTitle: molecular structure of promoter-bound yeast tfiid

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite