Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3628_(ppa)_4067602_4068090
DateFri Aug 9 18:20:31 BST 2019
Unique Job ID97fe61144c4ac61b
SequenceVQFDVTIEIP ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:42.386 Y:40.813 Z:39.191
Model (left) based on template c2uxsA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: 2.7a crystal structure of inorganic pyrophosphatase (rv3628)2 from mycobacterium tuberculosis at ph 7.5
Confidence and coverage
Confidence:100.0% Coverage: 98%
159 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2uxsA_
100.0 100
PDB header:hydrolase
Chain: A: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: 2.7a crystal structure of inorganic pyrophosphatase (rv3628)2 from mycobacterium tuberculosis at ph 7.5
2d2prda_
100.0 52
Fold:OB-fold
Superfamily:Inorganic pyrophosphatase
Family:Inorganic pyrophosphatase
3c4lugA_
100.0 39
PDB header:hydrolase
Chain: A: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of inorganic pyrophosphatase ppa1 from arabidopsis2 thaliana
4c3ld3A_
100.0 43
PDB header:hydrolase
Chain: A: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of inorganic phosphatase from anaplasma2 phagocytophilum at 1.75a resolution
5d1i40a_
100.0 45
Fold:OB-fold
Superfamily:Inorganic pyrophosphatase
Family:Inorganic pyrophosphatase
6c3fq3H_
100.0 45
PDB header:hydrolase
Chain: H: PDB Molecule:inorganic pyrophosphatase:bacterial/archaeal inorganic
PDBTitle: crystal structure of inorganic phosphatase from brucella melitensis
7c1ygzC_
100.0 43
PDB header:hydrolase
Chain: C: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of inorganic pyrophosphatase from helicobacter2 pylori
8c5teaF_
100.0 36
PDB header:hydrolase
Chain: F: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of an inorganic pyrophosphatase from neisseria2 gonorrhoeae
9c6n1cB_
100.0 46
PDB header:hydrolase
Chain: B: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of inorganic pyrophosphatase from legionella2 pneumophila philadelphia 1
10d1udea_
100.0 48
Fold:OB-fold
Superfamily:Inorganic pyrophosphatase
Family:Inorganic pyrophosphatase
11d1qeza_
100.0 46
Fold:OB-fold
Superfamily:Inorganic pyrophosphatase
Family:Inorganic pyrophosphatase
12c3tr4C_
100.0 47
PDB header:hydrolase
Chain: C: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: structure of an inorganic pyrophosphatase (ppa) from coxiella burnetii
13c3d63B_
100.0 46
PDB header:hydrolase
Chain: B: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of inorganic pyrophosphatase from burkholderia2 pseudomallei
14c3emjL_
100.0 44
PDB header:hydrolase
Chain: L: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: 2.2 a crystal structure of inorganic pyrophosphatase from2 rickettsia prowazekii (p21 form)
15d1twla_
100.0 46
Fold:OB-fold
Superfamily:Inorganic pyrophosphatase
Family:Inorganic pyrophosphatase
16d1e9ga_
100.0 28
Fold:OB-fold
Superfamily:Inorganic pyrophosphatase
Family:Inorganic pyrophosphatase
17c6c45A_
100.0 28
PDB header:hydrolase
Chain: A: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of human inorganic pyrophosphatase in the p2121212 space group
18c4qlzA_
100.0 26
PDB header:hydrolase, metal binding protein
Chain: A: PDB Molecule:sjchgc07024 protein;
PDBTitle: the structure of inorganic pyrophosphatase from schistosoma japonicum
19c5wrtB_
100.0 28
PDB header:hydrolase
Chain: B: PDB Molecule:soluble inorganic pyrophosphatase;
PDBTitle: crystal structure of type i inorganic pyrophosphatase from toxoplasma2 gondii.
20c5c5vB_
100.0 30
PDB header:hydrolase
Chain: B: PDB Molecule:acidocalcisomal pyrophosphatase;
PDBTitle: recombinant inorganic pyrophosphatase from t brucei brucei
21c5cuvB_
not modelled 100.0 31
PDB header:metal binding protein
Chain: B: PDB Molecule:acidocalcisomal pyrophosphatase;
PDBTitle: crystal structure of trypanosoma cruzi vacuolar soluble2 pyrophosphatases in apo form
22c5wruA_
not modelled 100.0 23
PDB header:hydrolase
Chain: A: PDB Molecule:probable inorganic pyrophosphatase;
PDBTitle: crystal structure of type i inorganic pyrophosphatase from p2 falciparum
23c3lo0A_
not modelled 100.0 38
PDB header:hydrolase
Chain: A: PDB Molecule:inorganic pyrophosphatase;
PDBTitle: crystal structure of inorganic pyrophosphatase from2 ehrlichia chaffeensis
24c2dhxA_
not modelled 32.2 14
PDB header:rna binding protein
Chain: A: PDB Molecule:poly (adp-ribose) polymerase family, member 10
PDBTitle: solution structure of the rrm domain in the human poly (adp-2 ribose) polymerase family, member 10 variant
25c3ideD_
not modelled 30.2 21
PDB header:virus like particle
Chain: D: PDB Molecule:capsid protein vp2;
PDBTitle: structure of ipnv subviral particle
26c1wwhB_
not modelled 30.0 15
PDB header:protein transport
Chain: B: PDB Molecule:nucleoporin 35;
PDBTitle: crystal structure of the mppn domain of mouse nup35
27d1d02a_
not modelled 28.9 24
Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease MunI
28c2df7H_
not modelled 23.7 25
PDB header:virus like particle
Chain: H: PDB Molecule:structural polyprotein vp2;
PDBTitle: crystal structure of infectious bursal disease virus vp2 subviral2 particle
29d2df7a1
not modelled 22.5 25
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Birnaviridae-like VP
30c2yueA_
not modelled 22.4 15
PDB header:rna binding protein
Chain: A: PDB Molecule:protein neuralized;
PDBTitle: solution structure of the neuz (nhr) domain in neuralized2 from drosophila melanogaster
31d1wwha1
not modelled 17.5 15
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
32c5cioA_
not modelled 17.5 15
PDB header:metal binding protein
Chain: A: PDB Molecule:pyrroloquinoline quinone biosynthesis protein pqqf;
PDBTitle: crystal structure of pqqf
33c5hnmC_
not modelled 16.9 10
PDB header:hydrolase
Chain: C: PDB Molecule:d-alanyl-d-alanine carboxypeptidase;
PDBTitle: crystal structure of vancomycin resistance d,d-pentapeptidase vany2 e175a mutant from vanb-type resistance cassette in complex with3 zn(ii)
34c2vtvA_
not modelled 16.2 24
PDB header:hydrolase
Chain: A: PDB Molecule:phb depolymerase phaz7;
PDBTitle: phaz7 depolymerase from paucimonas lemoignei
35d2fgea4
not modelled 15.3 17
Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:MPP-like
36d1hr6a1
not modelled 15.3 9
Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:MPP-like
37c2opdA_
not modelled 15.1 19
PDB header:cell adhesion
Chain: A: PDB Molecule:pilx;
PDBTitle: structure of the neisseria meningitidis minor type iv pilin, pilx
38c2l76A_
not modelled 14.8 33
PDB header:transcription
Chain: A: PDB Molecule:nfatc2-interacting protein;
PDBTitle: solution nmr structure of human nfatc2ip ubiquitin-like domain,2 nfatc2ip_244_338, nesg target ht65a/ocsp target hs00387_244_338/sgc-3 toronto
39c4joiA_
not modelled 14.5 18
PDB header:dna binding protein
Chain: A: PDB Molecule:cst complex subunit stn1;
PDBTitle: crystal structure of the human telomeric stn1-ten1 complex
40c2e63A_
not modelled 13.3 29
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:kiaa1787 protein;
PDBTitle: solution structure of the neuz domain in kiaa1787 protein
41c3kztB_
not modelled 12.9 22
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein of unknown function (np_812423.1) from2 bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution
42d1ppja1
not modelled 11.5 9
Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:MPP-like
43c1p0yA_
not modelled 11.5 50
PDB header:transferase
Chain: A: PDB Molecule:ribulose-1,5 bisphosphate carboxylase/oxygenase
PDBTitle: crystal structure of the set domain of lsmt bound to2 melysine and adohcy
44c4q7jD_
not modelled 10.6 16
PDB header:translation/transferase
Chain: D: PDB Molecule:30s ribosomal protein s1;
PDBTitle: complex structure of viral rna polymerase
45d1p9qc3
not modelled 10.1 30
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:Hypothetical protein AF0491, C-terminal domain
46d1t95a3
not modelled 9.5 30
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:Hypothetical protein AF0491, C-terminal domain
47c6jo52_
not modelled 9.3 43
PDB header:photosynthesis
Chain: 2: PDB Molecule:chlorophyll a-b binding protein, chloroplastic;
PDBTitle: structure of the green algal photosystem i supercomplex with light-2 harvesting complex i
48d1x9na2
not modelled 9.2 17
Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:DNA ligase/mRNA capping enzyme postcatalytic domain
49c3mjdA_
not modelled 9.2 20
PDB header:transferase
Chain: A: PDB Molecule:orotate phosphoribosyltransferase;
PDBTitle: 1.9 angstrom crystal structure of orotate phosphoribosyltransferase2 (pyre) francisella tularensis.
50c4qmfB_
not modelled 8.7 12
PDB header:rna binding protein
Chain: B: PDB Molecule:krr1 small subunit processome component;
PDBTitle: structure of the krr1 and faf1 complex from saccharomyces cerevisiae
51c4eskA_
not modelled 8.4 19
PDB header:immune system
Chain: A: PDB Molecule:leukocyte-associated immunoglobulin-like receptor 1;
PDBTitle: crystal structure of a strand-swapped dimer of mouse leukocyte-2 associated immunoglobulin-like receptor 1 (nysgrc-006047)ig-like3 domain
52c4jw1A_
not modelled 8.3 24
PDB header:hydrolase activator
Chain: A: PDB Molecule:effector protein b;
PDBTitle: crystal structure of n-terminal 618-residue fragment of lepb from2 legionella pneumophila
53c2jnsA_
not modelled 7.9 7
PDB header:unknown function
Chain: A: PDB Molecule:bromodomain-containing protein 4;
PDBTitle: solution structure of the bromodomain-containing protein 42 et domain
54c5xswA_
not modelled 7.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: crystal structure of an archaeal chitinase in the substrate-complex2 form (p63)
55c2rukA_
not modelled 7.7 33
PDB header:transcription
Chain: A: PDB Molecule:cellular tumor antigen p53;
PDBTitle: solution structure of the complex between p53 transactivation domain 22 and tfiih p62 ph domain
56d1t1ea2
not modelled 7.6 15
Fold:Ferredoxin-like
Superfamily:Protease propeptides/inhibitors
Family:Subtilase propeptides/inhibitors
57c2mmpA_
not modelled 7.4 24
PDB header:ribosomal protein
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution structure of a ribosomal protein
58c4zgnA_
not modelled 6.9 9
PDB header:cell cycle
Chain: A: PDB Molecule:cell division cycle protein 123;
PDBTitle: structure cdc123 complexed with the c-terminal domain of eif2gamma
59c3k7bA_
not modelled 6.4 50
PDB header:viral protein
Chain: A: PDB Molecule:protein a33;
PDBTitle: the structure of the poxvirus a33 protein reveals a dimer of unique c-2 type lectin-like domains.
60d1pzna1
not modelled 6.2 9
Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
61c5hytC_
not modelled 6.2 5
PDB header:immune system
Chain: C: PDB Molecule:precursor to protein sir22;
PDBTitle: structure of human c4b-binidng protein alpha chain ccp domains 1 and 22 in complex with the hypervariable region of group a streptococcus m223 protein
62c5hytE_
not modelled 6.2 5
PDB header:immune system
Chain: E: PDB Molecule:precursor to protein sir22;
PDBTitle: structure of human c4b-binidng protein alpha chain ccp domains 1 and 22 in complex with the hypervariable region of group a streptococcus m223 protein
63c2e4mC_
not modelled 6.1 27
PDB header:toxin
Chain: C: PDB Molecule:ha-17;
PDBTitle: crystal structure of hemagglutinin subcomponent complex (ha-2 33/ha-17) from clostridium botulinum serotype d strain 4947
64c5hytA_
not modelled 6.0 5
PDB header:immune system
Chain: A: PDB Molecule:precursor to protein sir22;
PDBTitle: structure of human c4b-binidng protein alpha chain ccp domains 1 and 22 in complex with the hypervariable region of group a streptococcus m223 protein
65c5hytG_
not modelled 6.0 5
PDB header:immune system
Chain: G: PDB Molecule:precursor to protein sir22;
PDBTitle: structure of human c4b-binidng protein alpha chain ccp domains 1 and 22 in complex with the hypervariable region of group a streptococcus m223 protein
66c2przB_
not modelled 5.9 22
PDB header:transferase
Chain: B: PDB Molecule:orotate phosphoribosyltransferase 1;
PDBTitle: s. cerevisiae orotate phosphoribosyltransferase complexed with omp
67c4x8yA_
not modelled 5.9 16
PDB header:membrane protein
Chain: A: PDB Molecule:membrane-associated progesterone receptor component 1;
PDBTitle: crystal structure of human pgrmc1 cytochrome b5-like domain
68d1hmca_
not modelled 5.7 22
Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Short-chain cytokines
69c5yl1A_
not modelled 5.7 43
PDB header:viral protein
Chain: A: PDB Molecule:capsid protein;
PDBTitle: t=1 subviral particle of penaeus vannamei nodavirus capsid protein2 deletion mutant (delta 1-37 & 251-368)
70c4yn7A_
not modelled 5.7 16
PDB header:transcription
Chain: A: PDB Molecule:yfir;
PDBTitle: non-oxidized yfir
71c3cx5L_
not modelled 5.7 8
PDB header:oxidoreductase
Chain: L: PDB Molecule:cytochrome b-c1 complex subunit 1, mitochondrial;
PDBTitle: structure of complex iii with bound cytochrome c in reduced state and2 definition of a minimal core interface for electron transfer.
72d2ghpa1
not modelled 5.6 11
Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
73c1ayrA_
not modelled 5.6 18
PDB header:sensory transduction
Chain: A: PDB Molecule:arrestin;
PDBTitle: arrestin from bovine rod outer segments
74c6izlB_
not modelled 5.6 43
PDB header:virus
Chain: B: PDB Molecule:mud crab tombus-like virus;
PDBTitle: cryo-em structure of mud crab tombus-like virus at 3.3 angstroms2 resolution
75d1w7ca3
not modelled 5.4 24
Fold:Cystatin-like
Superfamily:Amine oxidase N-terminal region
Family:Amine oxidase N-terminal region
76c6ab6A_
not modelled 5.3 43
PDB header:virus like particle
Chain: A: PDB Molecule:capsid protein;
PDBTitle: cryo-em structure of t=3 penaeus vannamei nodavirus
77d1q2la1
not modelled 5.3 11
Fold:LuxS/MPP-like metallohydrolase
Superfamily:LuxS/MPP-like metallohydrolase
Family:MPP-like
78d2g7oa1
not modelled 5.3 15
Fold:TraM-like
Superfamily:TraM-like
Family:TraM-like
79c4cw5B_
not modelled 5.2 8
PDB header:oxidoreductase
Chain: B: PDB Molecule:dfna;
PDBTitle: crystal structure of the enoyl reductase domain of dfna2 from bacillus amyloliquefaciens
80c6i9bA_
not modelled 5.2 14
PDB header:rna binding protein
Chain: A: PDB Molecule:la-related protein 4;
PDBTitle: nmr structure of the la module from human larp4a

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