Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3630_(-)_4069354_4070649
DateFri Aug 9 18:20:31 BST 2019
Unique Job ID6291fc92afbdbc7a
SequenceLAVGAAAVTE ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:56.643 Y:58.762 Z:59.652
Model (left) based on template c6cc4A_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:soluble cytochrome b562, lipid ii flippase murj chimera;
PDBTitle: structure of murj from escherichia coli
Confidence and coverage
Confidence:100.0% Coverage: 94%
405 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6cc4A_
100.0 11
PDB header:transport protein
Chain: A: PDB Molecule:soluble cytochrome b562, lipid ii flippase murj chimera;
PDBTitle: structure of murj from escherichia coli
2c5y50A_
100.0 10
PDB header:membrane protein
Chain: A: PDB Molecule:protein detoxification 14;
PDBTitle: crystal structure of eukaryotic mate transporter atdtx14
3c5xjjA_
100.0 9
PDB header:transport protein
Chain: A: PDB Molecule:multi drug efflux transporter;
PDBTitle: crystal structure of a mate family protein
4c6idrA_
100.0 11
PDB header:transport protein
Chain: A: PDB Molecule:mate family efflux transporter;
PDBTitle: crystal structure of vibrio cholerae mate transporter vcmn in the bent2 form
5c5t77A_
100.0 10
PDB header:transport protein
Chain: A: PDB Molecule:putative lipid ii flippase murj;
PDBTitle: crystal structure of the mop flippase murj
6c6fv6A_
100.0 8
PDB header:membrane protein
Chain: A: PDB Molecule:aq128;
PDBTitle: monomer structure of the mate family multidrug resistance transporter2 aq_128 from aquifex aeolicus in the outward-facing state
7c4lz9A_
100.0 8
PDB header:transport protein
Chain: A: PDB Molecule:bh2163 protein;
PDBTitle: structure of mate multidrug transporter dinf-bh in complex with r6g
8c4z3pA_
100.0 10
PDB header:transport protein
Chain: A: PDB Molecule:putative drug/sodium antiporter;
PDBTitle: mate transporter clbm in complex with rb+
9c3vvpA_
100.0 14
PDB header:transport protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of mate in complex with br-nrf
10c3mkuB_
99.9 11
PDB header:transport protein
Chain: B: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug
PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
11c3mkuA_
99.9 12
PDB header:transport protein
Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug
PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
12c4hunA_
99.4 11
PDB header:transport protein
Chain: A: PDB Molecule:multidrug efflux protein;
PDBTitle: mate transporter norm-ng in complex with r6g and monobody
13c4n7wA_
86.5 12
PDB header:transport protein
Chain: A: PDB Molecule:transporter, sodium/bile acid symporter family;
PDBTitle: crystal structure of the sodium bile acid symporter from yersinia2 frederiksenii
14c6n3qA_
11.7 11
PDB header:transport protein
Chain: A: PDB Molecule:protein transport protein sec61;
PDBTitle: cryo-em structure of the yeast sec complex
15c2luvA_
10.0 18
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-x;
PDBTitle: structure and binding interface of the cytosolic tails of axb22 integrin
16c2momB_
8.6 12
PDB header:membrane protein
Chain: B: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
17c2momC_
8.6 12
PDB header:membrane protein
Chain: C: PDB Molecule:lysosome-associated membrane glycoprotein 2;
PDBTitle: structural insights of tm domain of lamp-2a in dpc micelles
18c5lo2A_
8.0 45
PDB header:structural protein
Chain: A: PDB Molecule:ppatyr;
PDBTitle: engineering protein stability with atomic precision in a monomeric2 miniprotein
19c5lo4A_
8.0 45
PDB header:structural protein
Chain: A: PDB Molecule:ppa-ch3;
PDBTitle: engineering protein stability with atomic precision in a monomeric2 miniprotein
20c5lo3A_
8.0 45
PDB header:structural protein
Chain: A: PDB Molecule:ppaome;
PDBTitle: engineering protein stability with atomic precision in a monomeric2 miniprotein
21d3ehbb2
not modelled 7.0 10
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
22c4iu8A_
not modelled 6.7 8
PDB header:transport protein
Chain: A: PDB Molecule:nitrite extrusion protein 2;
PDBTitle: crystal structure of a membrane transporter (selenomethionine2 derivative)
23d3dtub2
not modelled 6.6 13
Fold:Transmembrane helix hairpin
Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region
Family:Cytochrome c oxidase subunit II-like, transmembrane region
24c3h1cL_
not modelled 6.6 20
PDB header:transferase
Chain: L: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
25c3h1cE_
not modelled 6.6 20
PDB header:transferase
Chain: E: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
26c3h1cY_
not modelled 6.6 20
PDB header:transferase
Chain: Y: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
27c3h1cS_
not modelled 6.6 20
PDB header:transferase
Chain: S: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
28c3h1cH_
not modelled 6.6 20
PDB header:transferase
Chain: H: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
29c3h1cP_
not modelled 6.6 20
PDB header:transferase
Chain: P: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
30c3h1cJ_
not modelled 6.6 20
PDB header:transferase
Chain: J: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
31c3h1cW_
not modelled 6.6 20
PDB header:transferase
Chain: W: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
32c3gmeD_
not modelled 6.6 20
PDB header:transferase / protein binding
Chain: D: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase in complex2 with rnase e and manganese
33c3h1cN_
not modelled 6.6 20
PDB header:transferase
Chain: N: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
34c3h1cF_
not modelled 6.6 20
PDB header:transferase
Chain: F: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
35c3h1cU_
not modelled 6.6 20
PDB header:transferase
Chain: U: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
36c3gcmF_
not modelled 6.6 20
PDB header:transferase / protein binding
Chain: F: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of e. coli polynucleotide phosphorylase2 bound to rna and rnase e
37c3h1cD_
not modelled 6.6 20
PDB header:transferase
Chain: D: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of polynucleotide phosphorylase (pnpase)2 core bound to rnase e and tungstate
38c3gcmD_
not modelled 6.6 20
PDB header:transferase / protein binding
Chain: D: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of e. coli polynucleotide phosphorylase2 bound to rna and rnase e
39c2zqpY_
not modelled 6.5 13
PDB header:protein transport
Chain: Y: PDB Molecule:preprotein translocase secy subunit;
PDBTitle: crystal structure of secye translocon from thermus2 thermophilus
40c3gcmE_
not modelled 6.4 18
PDB header:transferase / protein binding
Chain: E: PDB Molecule:ribonuclease e;
PDBTitle: crystal structure of e. coli polynucleotide phosphorylase2 bound to rna and rnase e
41c3wdoA_
not modelled 6.3 12
PDB header:transport protein
Chain: A: PDB Molecule:mfs transporter;
PDBTitle: structure of e. coli yajr transporter
42c3j01A_
not modelled 6.3 15
PDB header:ribosome/ribosomal protein
Chain: A: PDB Molecule:preprotein translocase secy subunit;
PDBTitle: structure of the ribosome-secye complex in the membrane environment
43c4e6nC_
not modelled 6.0 36
PDB header:protein binding
Chain: C: PDB Molecule:metallophosphoesterase;
PDBTitle: crystal structure of bacterial pnkp-c/hen1-n heterodimer
44d1pw4a_
not modelled 5.8 10
Fold:MFS general substrate transporter
Superfamily:MFS general substrate transporter
Family:Glycerol-3-phosphate transporter
45c3ty8A_
not modelled 5.8 36
PDB header:transferase
Chain: A: PDB Molecule:polynucleotide 2',3'-cyclic phosphate phosphodiesterase /
PDBTitle: crystal structure of c. thermocellum pnkp ligase domain apo form
46c4dblB_
not modelled 5.8 12
PDB header:transport protein
Chain: B: PDB Molecule:vitamin b12 import system permease protein btuc;
PDBTitle: crystal structure of e159q mutant of btucdf
47c2bf9A_
not modelled 5.5 33
PDB header:hormone
Chain: A: PDB Molecule:pancreatic hormone;
PDBTitle: anisotropic refinement of avian (turkey) pancreatic polypeptide at 0.2 99 angstroms resolution.
48c4c9qB_
not modelled 5.5 12
PDB header:transport protein
Chain: B: PDB Molecule:adp, atp carrier protein 3;
PDBTitle: structure of yeast mitochondrial adp/atp carrier isoform 32 inhibited by carboxyatractyloside (p21 crystal form)
49c1g2cN_
not modelled 5.5 30
PDB header:viral protein
Chain: N: PDB Molecule:fusion protein (f);
PDBTitle: human respiratory syncytial virus fusion protein core
50c1tz5A_
not modelled 5.4 27
PDB header:hormone/growth factor
Chain: A: PDB Molecule:chimera of pancreatic hormone and neuropeptide y;
PDBTitle: [pnpy19-23]-hpp bound to dpc micelles
51c4xruE_
not modelled 5.1 7
PDB header:protein binding
Chain: E: PDB Molecule:rnl;
PDBTitle: structure of pnkp1/rnl/hen1 complex
52c5z62M_
not modelled 5.1 17
PDB header:electron transport
Chain: M: PDB Molecule:cytochrome c oxidase subunit 8a, mitochondrial;
PDBTitle: structure of human cytochrome c oxidase
53c3v5uA_
not modelled 5.0 9
PDB header:metal transport
Chain: A: PDB Molecule:uncharacterized membrane protein mj0091;
PDBTitle: structure of sodium/calcium exchanger from methanocaldococcus2 jannaschii dsm 2661
54c2jwaA_
not modelled 5.0 21
PDB header:transferase
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: erbb2 transmembrane segment dimer spatial structure

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below