Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3635_(-)_4073813_4075588
DateFri Aug 9 18:20:32 BST 2019
Unique Job ID1c9d7fdafb339ee1
SequenceMPAPRMPRVA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:57.220 Y:59.668 Z:64.149
Model (left) based on template c6p2rB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 2;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor
Confidence and coverage
Confidence: 99.7% Coverage: 65%
385 residues ( 65% of your sequence) have been modelled with 99.7% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
470 residues ( 80%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6p2rB_



99.7 16
PDB header:transferase
Chain: B: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 2;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor
2c5f15A_



99.7 13
PDB header:transferase
Chain: A: PDB Molecule:4-amino-4-deoxy-l-arabinose (l-ara4n) transferase;
PDBTitle: crystal structure of arnt from cupriavidus metallidurans bound to2 undecaprenyl phosphate
3c6p25A_



99.6 13
PDB header:transferase
Chain: A: PDB Molecule:dolichyl-phosphate-mannose--protein mannosyltransferase 1;
PDBTitle: structure of s. cerevisiae protein o-mannosyltransferase pmt1-pmt22 complex bound to the sugar donor and a peptide acceptor
4c3wajA_



99.3 12
PDB header:transferase
Chain: A: PDB Molecule:transmembrane oligosaccharyl transferase;
PDBTitle: crystal structure of the archaeoglobus fulgidus2 oligosaccharyltransferase (o29867_arcfu) complex with zn and sulfate
5c3rceA_



99.1 10
PDB header:transferase/peptide
Chain: A: PDB Molecule:oligosaccharide transferase to n-glycosylate proteins;
PDBTitle: bacterial oligosaccharyltransferase pglb
6c6eznF_



98.8 13
PDB header:membrane protein
Chain: F: PDB Molecule:dolichyl-diphosphooligosaccharide--protein
PDBTitle: cryo-em structure of the yeast oligosaccharyltransferase (ost) complex
7d1lura_



56.4 17
Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Aldose 1-epimerase (mutarotase)
8d1wxma1



50.2 25
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
9c4rdbA_



45.8 27
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:immunoreactive 32 kda antigen pg49;
PDBTitle: crystal structure of an immunoreactive 32 kda antigen pg49 (pg_0181)2 from porphyromonas gingivalis w83 at 1.45 a resolution (psi community3 target, nakayama)
10c5n1tM_



45.2 21
PDB header:oxidoreductase
Chain: M: PDB Molecule:copc;
PDBTitle: crystal structure of complex between flavocytochrome c and copper2 chaperone copc from t. paradoxus
11c4adjB_



43.6 18
PDB header:viral protein
Chain: B: PDB Molecule:e1 envelope glycoprotein;
PDBTitle: crystal structure of the rubella virus glycoprotein e1 in its2 post-fusion form crystallized in presence of 1mm of calcium acetate
12c6cd2C_



37.9 14
PDB header:membrane protein/chaperone
Chain: C: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the papc usher bound to the chaperone-adhesin2 papd-papg
13c6nfqC_



31.5 13
PDB header:metal binding protein
Chain: C: PDB Molecule:copc;
PDBTitle: copc from pseudomonas fluorescens
14c3ohnA_



30.2 15
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane usher protein fimd;
PDBTitle: crystal structure of the fimd translocation domain
15d2f2ha1



29.2 28
Fold:Putative glucosidase YicI, C-terminal domain
Superfamily:Putative glucosidase YicI, C-terminal domain
Family:Putative glucosidase YicI, C-terminal domain
16c4dipD_



24.5 18
PDB header:isomerase
Chain: D: PDB Molecule:peptidyl-prolyl cis-trans isomerase fkbp14;
PDBTitle: crystal structure of human peptidyl-prolyl cis-trans isomerase fkbp14
17c2w1wB_



22.1 13
PDB header:hydrolase
Chain: B: PDB Molecule:lipolytic enzyme, g-d-s-l;
PDBTitle: native structure of a family 35 carbohydrate binding module2 from clostridium thermocellum
18c5yxiA_



21.3 23
PDB header:de novo protein
Chain: A: PDB Molecule:drafx6;
PDBTitle: designed protein drafx6
19c3k8rA_



19.7 17
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein of unknown function (yp_427503.1) from2 rhodospirillum rubrum atcc 11170 at 2.75 a resolution
20c4jjaA_



19.1 12
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf1343 family protein (bf0379) from2 bacteroides fragilis nctc 9343 at 1.30 a resolution
21c2yevB_



not modelled 18.9 17
PDB header:electron transport
Chain: B: PDB Molecule:cytochrome c oxidase subunit 2;
PDBTitle: structure of caa3-type cytochrome oxidase
22c6gszA_



not modelled 17.6 12
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-l-rhamnosidase;
PDBTitle: crystal structure of native alfa-l-rhamnosidase from aspergillus2 terreus
23c2kzbA_



not modelled 17.4 10
PDB header:protein transport
Chain: A: PDB Molecule:autophagy-related protein 19;
PDBTitle: solution structure of alpha-mannosidase binding domain of atg19
24c4mspB_



not modelled 16.8 18
PDB header:isomerase
Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase fkbp14;
PDBTitle: crystal structure of human peptidyl-prolyl cis-trans isomerase fkbp222 (aka fkbp14) containing two ef-hand motifs
25d1nsza_



not modelled 16.7 17
Fold:Supersandwich
Superfamily:Galactose mutarotase-like
Family:Aldose 1-epimerase (mutarotase)
26c2okxB_



not modelled 16.5 18
PDB header:hydrolase
Chain: B: PDB Molecule:rhamnosidase b;
PDBTitle: crystal structure of gh78 family rhamnosidase of bacillus sp. gl1 at2 1.9 a
27d1ulva2



not modelled 16.2 24
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
28c2vzqA_



not modelled 16.1 16
PDB header:hydrolase
Chain: A: PDB Molecule:exo-beta-d-glucosaminidase;
PDBTitle: c-terminal cbm35 from amycolatopsis orientalis exo-chitosanase csxa in2 complex with digalacturonic acid
29c5ir6B_



not modelled 15.9 7
PDB header:oxidoreductase
Chain: B: PDB Molecule:bd-type quinol oxidase subunit ii;
PDBTitle: the structure of bd oxidase from geobacillus thermodenitrificans
30c3mwxA_



not modelled 15.9 12
PDB header:isomerase
Chain: A: PDB Molecule:aldose 1-epimerase;
PDBTitle: crystal structure of a putative galactose mutarotase (bsu18360) from2 bacillus subtilis at 1.45 a resolution
31d1j0ha2



not modelled 15.6 20
Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
32d2o34a1



not modelled 15.4 23
Fold:T-fold
Superfamily:ApbE-like
Family:DVU1097-like
33c3nreB_



not modelled 14.9 13
PDB header:isomerase
Chain: B: PDB Molecule:aldose 1-epimerase;
PDBTitle: crystal structure of a putative aldose 1-epimerase (b2544) from2 escherichia coli k12 at 1.59 a resolution
34d1ix2a_



not modelled 14.8 18
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Copper resistance protein C (CopC, PcoC)
35c4dtfA_



not modelled 14.7 16
PDB header:toxin
Chain: A: PDB Molecule:vgrg protein;
PDBTitle: structure of a vgrg vibrio cholerae toxin acd domain in complex with2 amp-pnp and mg++
36c4gxbA_



not modelled 14.6 25
PDB header:protein transport/cell adhesion
Chain: A: PDB Molecule:sorting nexin-17;
PDBTitle: structure of the snx17 atypical ferm domain bound to the npxy motif of2 p-selectin
37c3i31A_



not modelled 14.6 19
PDB header:rna binding protein,hydrolase
Chain: A: PDB Molecule:heat resistant rna dependent atpase;
PDBTitle: hera helicase rna binding domain is an rrm fold
38c3dcdA_



not modelled 14.6 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:galactose mutarotase related enzyme;
PDBTitle: x-ray structure of the galactose mutarotase related enzyme q5fkd7 from2 lactobacillus acidophilus at the resolution 1.9a. northeast3 structural genomics consortium target lar33.
39c2bgpA_



not modelled 14.6 11
PDB header:carbohydrate binding protein
Chain: A: PDB Molecule:endo-b1,4-mannanase 5c;
PDBTitle: mannan binding module from man5c in bound conformation
40c5w21B_



not modelled 14.2 21
PDB header:hydrolase/protein binding
Chain: B: PDB Molecule:fibroblast growth factor 23;
PDBTitle: crystal structure of a 1:1:1 fgf23-fgfr1c-aklotho ternary complex
41c2w3jA_



not modelled 14.2 16
PDB header:sugar-binding protein
Chain: A: PDB Molecule:carbohydrate binding module;
PDBTitle: structure of a family 35 carbohydrate binding module from2 an environmental isolate
42c4k05B_



not modelled 14.1 12
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:conserved hypothetical exported protein;
PDBTitle: crystal structure of a duf1343 family protein (bf0371) from2 bacteroides fragilis nctc 9343 at 1.65 a resolution
43c3rfuC_



not modelled 13.7 18
PDB header:hydrolase, membrane protein
Chain: C: PDB Molecule:copper efflux atpase;
PDBTitle: crystal structure of a copper-transporting pib-type atpase
44c6e14D_



not modelled 13.7 13
PDB header:membrane protein
Chain: D: PDB Molecule:fimbrial biogenesis outer membrane usher protein;
PDBTitle: handover mechanism of the growing pilus by the bacterial outer2 membrane usher fimd
45d1c3ga2



not modelled 13.4 19
Fold:HSP40/DnaJ peptide-binding domain
Superfamily:HSP40/DnaJ peptide-binding domain
Family:HSP40/DnaJ peptide-binding domain
46c6e8aA_



not modelled 13.3 19
PDB header:unknown function
Chain: A: PDB Molecule:duf1795 domain-containing protein;
PDBTitle: crystal structure of dcrb from salmonella enterica at 1.92 angstroms2 resolution
47c4rnlB_



not modelled 12.9 23
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:possible galactose mutarotase;
PDBTitle: the crystal structure of a possible galactose mutarotase from2 streptomyces platensis subsp. rosaceus
48d1od3a_



not modelled 12.7 19
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 6 carbohydrate binding module, CBM6
49d1i5pa1



not modelled 12.7 19
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:delta-Endotoxin, C-terminal domain
50c2hbpA_



not modelled 12.2 18
PDB header:endocytosis, protein binding
Chain: A: PDB Molecule:cytoskeleton assembly control protein sla1;
PDBTitle: solution structure of sla1 homology domain 1
51c3oisA_



not modelled 12.2 6
PDB header:hydrolase
Chain: A: PDB Molecule:cysteine protease;
PDBTitle: crystal structure xylellain, a cysteine protease from xylella2 fastidiosa
52c5xyiD_



not modelled 12.0 21
PDB header:ribosome
Chain: D: PDB Molecule:ribosomal protein s3, putative;
PDBTitle: small subunit of trichomonas vaginalis ribosome
53d2i6va1



not modelled 11.9 26
Fold:PDZ domain-like
Superfamily:PDZ domain-like
Family:EpsC C-terminal domain-like
54c2auwB_



not modelled 11.8 16
PDB header:unknown function
Chain: B: PDB Molecule:hypothetical protein ne0471;
PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718
55c1xrdA_



not modelled 11.7 30
PDB header:membrane protein
Chain: A: PDB Molecule:light-harvesting protein b-880, alpha chain;
PDBTitle: light-harvesting complex 1 alfa subunit from wild-type2 rhodospirillum rubrum
56d1xrda1



not modelled 11.7 30
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
57c5awqA_



not modelled 11.6 10
PDB header:hydrolase
Chain: A: PDB Molecule:isomaltodextranase;
PDBTitle: arthrobacter globiformis t6 isomalto-dextranse complexed with panose
58c5hj1A_



not modelled 11.6 25
PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase c protein;
PDBTitle: crystal structure of pdz domain of pullulanase c protein of type ii2 secretion system from klebsiella pneumoniae in complex with fatty3 acid
59c6et5b_



not modelled 11.6 27
PDB header:photosynthesis
Chain: B: PDB Molecule:
PDBTitle: reaction centre light harvesting complex 1 from blc. virids
60c3imhB_



not modelled 11.4 14
PDB header:isomerase
Chain: B: PDB Molecule:galactose-1-epimerase;
PDBTitle: crystal structure of galactose 1-epimerase from lactobacillus2 acidophilus ncfm
61c3n6yA_



not modelled 11.4 13
PDB header:unknown function
Chain: A: PDB Molecule:immunoglobulin-like protein;
PDBTitle: crystal structure of an immunoglobulin-like protein (pa1606) from2 pseudomonas aeruginosa at 1.50 a resolution
62c1sr9A_



not modelled 11.3 13
PDB header:transferase
Chain: A: PDB Molecule:2-isopropylmalate synthase;
PDBTitle: crystal structure of leua from mycobacterium tuberculosis
63d2c9qa1



not modelled 11.3 21
Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:Copper resistance protein C (CopC, PcoC)
64d2azeb1



not modelled 11.3 3
Fold:E2F-DP heterodimerization region
Superfamily:E2F-DP heterodimerization region
Family:E2F dimerization segment
65c2xznC_



not modelled 11.1 17
PDB header:ribosome
Chain: C: PDB Molecule:kh domain containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
66c2vqiA_



not modelled 11.1 6
PDB header:transport
Chain: A: PDB Molecule:outer membrane usher protein papc;
PDBTitle: structure of the p pilus usher (papc) translocation pore
67c4hs5B_



not modelled 10.8 12
PDB header:metal binding protein
Chain: B: PDB Molecule:protein cyay;
PDBTitle: frataxin from psychromonas ingrahamii as a model to study stability2 modulation within cyay protein family
68d1dp4a_



not modelled 10.6 27
Fold:Periplasmic binding protein-like I
Superfamily:Periplasmic binding protein-like I
Family:L-arabinose binding protein-like
69d1t3qa2



not modelled 10.6 18
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
70c4ifdE_



not modelled 10.5 27
PDB header:hydrolase/rna
Chain: E: PDB Molecule:exosome complex component rrp42;
PDBTitle: crystal structure of an 11-subunit eukaryotic exosome complex bound to2 rna
71c3i38E_



not modelled 10.5 19
PDB header:chaperone
Chain: E: PDB Molecule:putative chaperone dnaj;
PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578
72c3i38C_



not modelled 10.5 19
PDB header:chaperone
Chain: C: PDB Molecule:putative chaperone dnaj;
PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578
73c4v1ao_



not modelled 10.4 10
PDB header:ribosome
Chain: O: PDB Molecule:
PDBTitle: structure of the large subunit of the mammalian mitoribosome, part 22 of 2
74c2wzpR_



not modelled 10.3 16
PDB header:viral protein
Chain: R: PDB Molecule:lactococcal phage p2 orf16;
PDBTitle: structures of lactococcal phage p2 baseplate shed light on2 a novel mechanism of host attachment and activation in3 siphoviridae
75c2kijA_



not modelled 10.3 14
PDB header:hydrolase
Chain: A: PDB Molecule:copper-transporting atpase 1;
PDBTitle: solution structure of the actuator domain of the copper-2 transporting atpase atp7a
76c4jpdA_



not modelled 10.3 18
PDB header:metal binding protein
Chain: A: PDB Molecule:protein cyay;
PDBTitle: the structure of cyay from burkholderia cenocepacia
77c1fftG_



not modelled 10.2 16
PDB header:oxidoreductase
Chain: G: PDB Molecule:ubiquinol oxidase;
PDBTitle: the structure of ubiquinol oxidase from escherichia coli
78c2a8lB_



not modelled 10.2 12
PDB header:hydrolase
Chain: B: PDB Molecule:threonine aspartase 1;
PDBTitle: crystal structure of human taspase1 (t234a mutant)
79c3ccjU_



not modelled 10.2 25
PDB header:ribosome
Chain: U: PDB Molecule:50s ribosomal protein l24e;
PDBTitle: structure of anisomycin resistant 50s ribosomal subunit: 23s rrna2 mutation c2534u
80d1vqou1



not modelled 10.2 25
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Ribosomal protein L24e
81c6adqW_



not modelled 10.2 20
PDB header:electron transport
Chain: W: PDB Molecule:lpqe protein;
PDBTitle: respiratory complex ciii2civ2sod2 from mycobacterium smegmatis
82c2zkru_



not modelled 10.1 44
PDB header:ribosomal protein/rna
Chain: U: PDB Molecule:rna expansion segment es41;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
83c3zeyX_



not modelled 10.1 17
PDB header:ribosome
Chain: X: PDB Molecule:40s ribosomal protein s3, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
84c3ggqA_



not modelled 10.1 18
PDB header:viral protein
Chain: A: PDB Molecule:capsid protein;
PDBTitle: dimerization of hepatitis e virus capsid protein e2s domain is2 essential for virus-host interaction
85d1wf9a1



not modelled 10.1 18
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
86c3fljA_



not modelled 10.0 23
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein conserved in bacteria with a
PDBTitle: crystal structure of uncharacterized protein conserved in bacteria2 with a cystatin-like fold (yp_168589.1) from silicibacter pomeroyi3 dss-3 at 2.00 a resolution
87d1kn0a_



not modelled 10.0 13
Fold:dsRBD-like
Superfamily:dsRNA-binding domain-like
Family:The homologous-pairing domain of Rad52 recombinase
88c2x8nA_



not modelled 10.0 13
PDB header:structural genomics
Chain: A: PDB Molecule:cv0863;
PDBTitle: solution nmr structure of uncharacterized protein cv0863 from2 chromobacterium violaceum. northeast structural genomics target3 (nesg) target cvt3. ocsp target cv0863.
89c3wmmY_



not modelled 10.0 28
PDB header:photosynthesis
Chain: Y: PDB Molecule:lh1 alpha polypeptide;
PDBTitle: crystal structure of the lh1-rc complex from thermochromatium tepidum2 in c2 form
90c1hyoB_



not modelled 9.9 19
PDB header:hydrolase
Chain: B: PDB Molecule:fumarylacetoacetate hydrolase;
PDBTitle: crystal structure of fumarylacetoacetate hydrolase2 complexed with 4-(hydroxymethylphosphinoyl)-3-oxo-butanoic3 acid
91d1hdgo2



not modelled 9.9 42
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:GAPDH-like
92d1ew4a_



not modelled 9.9 15
Fold:N domain of copper amine oxidase-like
Superfamily:Frataxin/Nqo15-like
Family:Frataxin-like
93c3o1hB_



not modelled 9.9 12
PDB header:signaling protein
Chain: B: PDB Molecule:periplasmic protein tort;
PDBTitle: crystal structure of the tors sensor domain - tort complex in the2 presence of tmao
94d1uy4a_



not modelled 9.9 12
Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Family 6 carbohydrate binding module, CBM6
95c1s1iS_



not modelled 9.8 19
PDB header:ribosome
Chain: S: PDB Molecule:60s ribosomal protein l24-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1i, contains 60s subunit. the 40s4 ribosomal subunit is in file 1s1h.
96d1pjxa_



not modelled 9.8 5
Fold:6-bladed beta-propeller
Superfamily:Calcium-dependent phosphotriesterase
Family:SGL-like
97c1s1hC_



not modelled 9.8 21
PDB header:ribosome
Chain: C: PDB Molecule:40s ribosomal protein s3;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from yeast2 obtained by docking atomic models for rna and protein components into3 a 11.7 a cryo-em map. this file, 1s1h, contains 40s subunit. the 60s4 ribosomal subunit is in file 1s1i.
98c3izbB_



not modelled 9.8 21
PDB header:ribosome
Chain: B: PDB Molecule:40s ribosomal protein rps3 (s3p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
99c4go6C_



not modelled 9.8 35
PDB header:protein binding
Chain: C: PDB Molecule:hcf n-terminal chain 1;
PDBTitle: crystal structure of hcf-1 self-association sequence 1

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